Wall clock time and date at job start Tue Mar 31 2020 13:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 C 1.53000 * 109.47099 * 179.67576 * 3 2 1 5 5 C 1.53002 * 112.84841 * 65.24017 * 4 3 2 6 6 N 1.46501 * 109.46925 * 178.69486 * 5 4 3 7 7 C 1.36746 * 127.13739 * 93.60801 * 6 5 4 8 8 C 1.50695 * 126.34445 * 359.96442 * 7 6 5 9 9 N 1.30297 * 107.30133 * 179.83202 * 7 6 5 10 10 N 1.28522 * 110.05779 * 0.44482 * 9 7 6 11 11 C 1.31219 * 109.85800 * 359.71746 * 10 9 7 12 12 N 1.38584 * 126.47261 * 180.02562 * 11 10 9 13 13 C 1.46896 * 111.00170 * 105.91513 * 12 11 10 14 14 C 1.46906 * 110.99677 * 341.96078 * 12 11 10 15 15 H 1.08997 * 109.46669 * 60.00766 * 14 12 11 16 16 C 1.52998 * 109.47398 * 300.00374 * 14 12 11 17 17 C 1.50698 * 109.46781 * 180.02562 * 14 12 11 18 18 H 1.08004 * 120.00563 * 0.02562 * 17 14 12 19 19 C 1.37882 * 119.99985 * 180.02562 * 17 14 12 20 20 N 1.31509 * 119.99811 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 120.00171 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.47303 * 59.99692 * 21 19 17 23 23 H 1.48499 * 109.46885 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46688 * 299.99678 * 21 19 17 25 25 C 1.53784 * 113.61634 * 294.04196 * 4 3 2 26 26 C 1.53950 * 87.02020 * 220.05000 * 25 4 3 27 27 C 1.53774 * 87.11226 * 25.36272 * 26 25 4 28 28 H 1.08992 * 109.47307 * 175.39859 * 1 2 3 29 29 H 1.09002 * 109.46816 * 295.40164 * 1 2 3 30 30 H 1.09005 * 109.46654 * 55.39438 * 1 2 3 31 31 H 1.09003 * 109.47200 * 119.99949 * 2 1 3 32 32 H 1.09004 * 109.47032 * 240.00016 * 2 1 3 33 33 H 1.08996 * 109.47211 * 299.67785 * 3 2 1 34 34 H 1.09002 * 109.46941 * 59.67798 * 3 2 1 35 35 H 1.09000 * 109.46961 * 298.68935 * 5 4 3 36 36 H 1.08997 * 109.46930 * 58.69410 * 5 4 3 37 37 H 1.08999 * 109.46915 * 95.46967 * 8 7 6 38 38 H 1.09006 * 109.46757 * 215.46459 * 8 7 6 39 39 H 1.08999 * 109.47712 * 335.46563 * 8 7 6 40 40 H 1.08998 * 109.46800 * 58.97662 * 13 12 11 41 41 H 1.09009 * 109.46833 * 178.96675 * 13 12 11 42 42 H 1.08989 * 109.47364 * 298.97180 * 13 12 11 43 43 H 1.08995 * 109.47165 * 59.99614 * 16 14 12 44 44 H 1.08998 * 109.47045 * 180.02562 * 16 14 12 45 45 H 1.09001 * 109.46643 * 299.99781 * 16 14 12 46 46 H 0.96998 * 120.00400 * 180.02562 * 20 19 17 47 47 H 1.09000 * 113.61367 * 334.57205 * 25 4 3 48 48 H 1.09000 * 113.61375 * 105.47056 * 25 4 3 49 49 H 1.09000 * 113.53683 * 270.80914 * 26 25 4 50 50 H 1.08999 * 113.67089 * 139.93597 * 26 25 4 51 51 H 1.09009 * 113.61591 * 220.09172 * 27 26 25 52 52 H 1.09002 * 113.69183 * 89.20207 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0082 5 6 4.1709 0.8495 -1.2679 6 7 5.6327 0.9142 -1.1951 7 6 6.4811 -0.0614 -0.7497 8 6 6.0863 -1.4213 -0.2344 9 7 7.6943 0.4019 -0.8562 10 7 7.6697 1.5979 -1.3261 11 6 6.4297 1.9626 -1.5521 12 7 6.0089 3.1822 -2.0583 13 6 5.5736 3.0504 -3.4551 14 6 7.0626 4.1976 -1.9288 15 1 7.9463 3.8765 -2.4802 16 6 7.4199 4.3764 -0.4519 17 6 6.5694 5.5073 -2.4879 18 1 5.5728 5.5784 -2.8981 19 6 7.3905 6.6149 -2.4759 20 7 8.6042 6.5283 -1.9769 21 14 6.7790 8.2385 -3.1683 22 1 5.5757 8.6757 -2.4159 23 1 7.8441 9.2649 -3.0375 24 1 6.4309 8.0655 -4.6016 25 6 4.1792 0.8708 1.2993 26 6 5.2260 1.9959 1.2083 27 6 4.1840 2.7946 0.4076 28 1 -0.3633 -1.0243 -0.0824 29 1 -0.3633 0.4408 0.9283 30 1 -0.3633 0.5837 -0.8459 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6815 1.9546 -0.8928 34 1 1.6720 1.9580 0.8871 35 1 3.8578 -0.1898 -1.3680 36 1 3.8245 1.4181 -2.1308 37 1 6.1489 -2.1487 -1.0437 38 1 6.7602 -1.7145 0.5706 39 1 5.0643 -1.3844 0.1427 40 1 4.7577 2.3302 -3.5149 41 1 5.2314 4.0183 -3.8218 42 1 6.4084 2.7053 -4.0648 43 1 7.7763 3.4293 -0.0471 44 1 8.2013 5.1302 -0.3558 45 1 6.5361 4.6975 0.0994 46 1 9.1817 7.3075 -1.9681 47 1 3.5230 0.9539 2.1657 48 1 4.5988 -0.1280 1.1792 49 1 6.1078 1.7241 0.6281 50 1 5.4730 2.4428 2.1713 51 1 4.6075 3.3467 -0.4315 52 1 3.5286 3.4053 1.0286 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514359487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:45 Heat of formation + Delta-G solvation = 103.792608 kcal Electronic energy + Delta-G solvation = -30122.777288 eV Core-core repulsion = 26545.746810 eV Total energy + Delta-G solvation = -3577.030479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.23351 -40.56106 -38.84072 -35.44465 -35.03220 -34.80123 -32.64973 -31.16916 -30.28549 -28.78504 -27.44018 -27.21313 -26.50375 -25.92279 -23.77682 -23.52066 -21.87945 -21.80102 -21.10840 -19.63801 -18.45635 -17.90939 -17.59185 -17.04871 -16.43177 -16.01253 -15.60535 -15.57937 -15.46830 -15.14913 -14.83484 -14.51295 -14.27498 -14.18079 -13.92757 -13.69610 -13.50590 -13.33980 -13.03505 -13.00184 -12.96297 -12.79911 -12.68394 -12.60789 -12.31477 -12.23736 -12.19721 -12.08717 -12.02552 -11.89789 -11.77482 -11.48366 -11.33080 -11.03257 -10.87830 -10.77250 -10.62463 -10.50165 -10.16686 -9.01962 -8.11421 -6.26496 0.94423 1.41869 1.46986 1.47439 1.54815 1.99106 2.42186 3.04043 3.20265 3.37609 3.56848 3.62760 3.76848 3.90871 4.04452 4.08786 4.12391 4.17377 4.29752 4.38980 4.46146 4.50662 4.53429 4.64251 4.72668 4.79574 4.83400 4.85157 4.85468 4.88811 4.96262 4.97467 4.99865 5.06775 5.09544 5.12858 5.14454 5.19250 5.25812 5.35724 5.39126 5.46265 5.48044 5.54721 5.58617 5.61252 5.66354 5.67848 5.98139 6.07784 6.19210 6.66834 6.84033 7.42326 7.96689 8.95233 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.014351 B = 0.004641 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.614367 B = 6032.250182 C = 7049.112490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.077 4.077 5 C 0.126 3.874 6 N -0.467 5.467 7 C 0.178 3.822 8 C -0.063 4.063 9 N -0.341 5.341 10 N -0.372 5.372 11 C 0.376 3.624 12 N -0.449 5.449 13 C 0.040 3.960 14 C 0.245 3.755 15 H -0.028 1.028 16 C -0.108 4.108 17 C -0.524 4.524 18 H 0.074 0.926 19 C 0.013 3.987 20 N -0.920 5.920 21 Si 0.967 3.033 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.266 1.266 25 C -0.113 4.113 26 C -0.164 4.164 27 C -0.151 4.151 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.131 0.869 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.011 0.989 43 H 0.017 0.983 44 H 0.056 0.944 45 H 0.025 0.975 46 H 0.262 0.738 47 H 0.095 0.905 48 H 0.081 0.919 49 H 0.060 0.940 50 H 0.039 0.961 51 H 0.079 0.921 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 -16.586 3.620 25.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.129 4.129 4 C -0.078 4.078 5 C 0.005 3.995 6 N -0.162 5.162 7 C -0.091 4.091 8 C -0.122 4.122 9 N -0.180 5.180 10 N -0.215 5.215 11 C 0.019 3.981 12 N -0.173 5.173 13 C -0.107 4.107 14 C 0.139 3.861 15 H -0.010 1.010 16 C -0.166 4.166 17 C -0.562 4.562 18 H 0.093 0.907 19 C -0.187 4.187 20 N -0.559 5.559 21 Si 0.792 3.208 22 H -0.193 1.193 23 H -0.215 1.215 24 H -0.191 1.191 25 C -0.150 4.150 26 C -0.202 4.202 27 C -0.189 4.189 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.030 0.970 43 H 0.036 0.964 44 H 0.075 0.925 45 H 0.044 0.956 46 H 0.071 0.929 47 H 0.113 0.887 48 H 0.099 0.901 49 H 0.078 0.922 50 H 0.058 0.942 51 H 0.097 0.903 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.278 -16.250 3.963 24.048 hybrid contribution 0.004 1.349 -0.614 1.482 sum -17.274 -14.901 3.349 23.058 Atomic orbital electron populations 1.21769 0.95641 1.01927 1.01682 1.21538 0.95922 0.95572 1.02789 1.21448 0.90538 0.98237 1.02656 1.22003 0.96189 0.96020 0.93603 1.21990 0.73521 1.04885 0.99108 1.46379 1.09161 1.11861 1.48775 1.25474 0.86025 0.95584 1.01992 1.20532 1.03856 0.85168 1.02610 1.73860 1.20649 1.04198 1.19297 1.74670 1.17895 1.07130 1.21844 1.22699 0.85976 0.88817 1.00595 1.59101 1.38930 0.99852 1.19428 1.22400 0.99001 1.03921 0.85420 1.18860 0.85926 0.87704 0.93589 1.01021 1.21525 0.99566 0.98627 0.96916 1.21329 1.00814 0.94030 1.40038 0.90749 1.25780 0.94810 1.02532 0.95540 1.70083 1.08654 1.31103 1.46067 0.85476 0.77780 0.78396 0.79160 1.19323 1.21510 1.19065 1.23071 0.96669 0.97825 0.97453 1.23123 0.98186 0.99592 0.99334 1.23224 0.97686 0.96864 1.01121 0.92116 0.93058 0.92899 0.91226 0.91094 0.91536 0.91463 0.85069 0.88369 0.87820 0.88530 0.87640 0.89716 0.88916 0.97019 0.96422 0.92475 0.95551 0.92917 0.88687 0.90055 0.92153 0.94178 0.90277 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.22 5.60 30.59 0.17 -1.05 16 3 C -0.09 -1.33 4.65 30.59 0.14 -1.19 16 4 C -0.08 -1.55 0.96 -51.65 -0.05 -1.60 16 5 C 0.13 2.58 5.19 86.38 0.45 3.03 16 6 N -0.47 -14.03 1.62 -514.85 -0.83 -14.87 16 7 C 0.18 5.36 6.08 137.63 0.84 6.19 16 8 C -0.06 -1.05 9.53 71.23 0.68 -0.37 16 9 N -0.34 -14.16 12.07 -49.54 -0.60 -14.75 16 10 N -0.37 -17.83 9.72 -58.00 -0.56 -18.39 16 11 C 0.38 15.40 3.63 260.11 0.94 16.35 16 12 N -0.45 -19.23 2.59 -711.01 -1.84 -21.08 16 13 C 0.04 1.47 9.17 127.69 1.17 2.64 16 14 C 0.25 13.07 1.72 44.17 0.08 13.15 16 15 H -0.03 -1.75 7.93 -2.39 -0.02 -1.77 16 16 C -0.11 -5.91 8.79 71.98 0.63 -5.28 16 17 C -0.52 -28.33 7.89 25.60 0.20 -28.12 16 18 H 0.07 3.78 6.40 -2.91 -0.02 3.76 16 19 C 0.01 0.70 5.30 84.66 0.45 1.15 16 20 N -0.92 -54.83 11.32 21.45 0.24 -54.59 16 21 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 25 C -0.11 -2.30 6.16 31.18 0.19 -2.11 16 26 C -0.16 -5.19 7.29 31.18 0.23 -4.97 16 27 C -0.15 -4.53 6.79 31.12 0.21 -4.31 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.07 0.65 7.63 -2.39 -0.02 0.63 16 32 H 0.07 0.58 6.91 -2.39 -0.02 0.56 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.03 8.07 -2.39 -0.02 1.01 16 35 H 0.13 1.65 6.39 -2.39 -0.02 1.63 16 36 H 0.10 2.03 6.24 -2.39 -0.01 2.01 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.11 1.14 5.43 -2.39 -0.01 1.12 16 40 H 0.08 2.40 6.29 -2.39 -0.02 2.39 16 41 H 0.09 3.47 6.14 -2.38 -0.01 3.46 16 42 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.02 0.94 6.13 -2.39 -0.01 0.93 16 44 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 47 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 48 H 0.08 1.40 4.71 -2.39 -0.01 1.39 16 49 H 0.06 2.29 3.57 -2.39 -0.01 2.28 16 50 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.08 2.96 5.32 -2.38 -0.01 2.95 16 52 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 Total: -1.00 -73.71 377.80 6.39 -67.32 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.91 Total: 18.43 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 7.05 Total: -7.28 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -3.59 Total: -123.68 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.71 6.39 -67.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514359487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.108 kcal (2) G-P(sol) polarization free energy of solvation -73.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds