Wall clock time and date at job start Tue Mar 31 2020 12:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.51269 * 120.85033 * 2 1 4 4 C 1.53224 * 108.53738 * 128.67455 * 3 2 1 5 5 C 1.52957 * 109.40646 * 54.62469 * 4 3 2 6 6 C 1.50699 * 109.41617 * 176.36538 * 5 4 3 7 7 O 1.21280 * 119.99785 * 8.88184 * 6 5 4 8 8 N 1.34777 * 120.00232 * 188.87876 * 6 5 4 9 9 C 1.46923 * 120.63077 * 3.66408 * 8 6 5 10 10 C 1.53197 * 108.77606 * 126.36544 * 9 8 6 11 11 C 1.53040 * 109.31053 * 54.63655 * 10 9 8 12 12 C 1.53037 * 109.53777 * 298.63396 * 11 10 9 13 13 C 1.46929 * 120.63005 * 183.37943 * 8 6 5 14 14 H 1.09005 * 109.58134 * 113.84426 * 13 8 6 15 15 C 1.52999 * 109.58632 * 353.42438 * 13 8 6 16 16 H 1.09001 * 109.47236 * 54.86292 * 15 13 8 17 17 C 1.53004 * 109.47110 * 174.85985 * 15 13 8 18 18 N 1.46499 * 109.47017 * 294.85762 * 15 13 8 19 19 C 1.36933 * 119.99742 * 155.00404 * 18 15 13 20 20 H 1.07996 * 120.00323 * 359.97438 * 19 18 15 21 21 C 1.38821 * 119.99758 * 180.02562 * 19 18 15 22 22 N 1.31621 * 119.99585 * 180.02562 * 21 19 18 23 23 Si 1.86794 * 119.99924 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47422 * 90.00363 * 23 21 19 25 25 H 1.48503 * 109.47153 * 210.00185 * 23 21 19 26 26 H 1.48502 * 109.47252 * 330.00476 * 23 21 19 27 27 C 1.52954 * 109.81972 * 296.40638 * 5 4 3 28 28 C 1.51270 * 120.84896 * 180.02562 * 2 1 3 29 29 H 1.08001 * 120.00147 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99890 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.62320 * 8.95593 * 3 2 1 32 32 H 1.08997 * 109.62401 * 248.38561 * 3 2 1 33 33 H 1.09003 * 109.47990 * 294.64830 * 4 3 2 34 34 H 1.09000 * 109.49793 * 174.61240 * 4 3 2 35 35 H 1.09002 * 109.41230 * 56.50809 * 5 4 3 36 36 H 1.08998 * 109.58903 * 246.15381 * 9 8 6 37 37 H 1.09005 * 109.58865 * 6.44002 * 9 8 6 38 38 H 1.08999 * 109.49566 * 174.58771 * 10 9 8 39 39 H 1.08997 * 109.50034 * 294.68339 * 10 9 8 40 40 H 1.09001 * 109.46114 * 58.65256 * 11 10 9 41 41 H 1.08996 * 109.46129 * 178.61256 * 11 10 9 42 42 H 1.09001 * 109.49885 * 181.31913 * 12 11 10 43 43 H 1.09004 * 109.49940 * 301.38082 * 12 11 10 44 44 H 1.08994 * 109.47397 * 186.14137 * 17 15 13 45 45 H 1.09001 * 109.46996 * 306.14584 * 17 15 13 46 46 H 1.09002 * 109.47009 * 66.13812 * 17 15 13 47 47 H 0.96995 * 120.00094 * 335.00301 * 18 15 13 48 48 H 0.96999 * 119.99374 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.48089 * 183.57832 * 27 5 4 50 50 H 1.09003 * 109.48221 * 303.61197 * 27 5 4 51 51 H 1.09002 * 109.62653 * 351.03407 * 28 2 1 52 52 H 1.08993 * 109.63091 * 111.61530 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2987 0.0000 4 6 3.1148 1.2513 1.1342 5 6 3.9810 -0.0002 0.9826 6 6 5.0500 -0.0013 2.0448 7 8 5.0173 0.8176 2.9388 8 7 6.0423 -0.9123 2.0014 9 6 6.1408 -1.8591 0.8822 10 6 7.5463 -1.7659 0.2798 11 6 8.5850 -1.9855 1.3821 12 6 8.4417 -0.8939 2.4451 13 6 7.0497 -0.9734 3.0692 14 1 6.9491 -1.9127 3.6130 15 6 6.8519 0.2018 4.0287 16 1 5.8261 0.2013 4.3973 17 6 7.8175 0.0656 5.2078 18 7 7.1168 1.4581 3.3233 19 6 6.5421 2.6222 3.7588 20 1 5.8932 2.6141 4.6221 21 6 6.7926 3.8126 3.0900 22 7 6.2406 4.9316 3.5090 23 14 7.9143 3.8265 1.5965 24 1 7.1090 3.5959 0.3703 25 1 8.5953 5.1427 1.5010 26 1 8.9305 2.7519 1.7305 27 6 3.1148 -1.2518 1.1337 28 6 2.0856 -1.2987 -0.0006 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9354 -0.0004 31 1 1.4027 2.1329 0.1598 32 1 2.5981 1.4190 -0.9545 33 1 2.5977 1.2215 2.0933 34 1 3.7467 2.1383 1.0893 35 1 4.4487 -0.0001 -0.0020 36 1 5.9647 -2.8721 1.2439 37 1 5.3988 -1.6076 0.1243 38 1 7.6641 -2.5300 -0.4886 39 1 7.6880 -0.7798 -0.1624 40 1 8.4271 -2.9617 1.8406 41 1 9.5855 -1.9442 0.9518 42 1 9.1969 -1.0372 3.2179 43 1 8.5756 0.0841 1.9826 44 1 7.6033 0.8400 5.9442 45 1 7.6950 -0.9157 5.6662 46 1 8.8422 0.1753 4.8527 47 1 7.6993 1.4654 2.5477 48 1 6.4154 5.7633 3.0415 49 1 3.7467 -2.1388 1.0882 50 1 2.5978 -1.2224 2.0928 51 1 1.4027 -2.1331 0.1591 52 1 2.5981 -1.4187 -0.9550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689905727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:55 Heat of formation + Delta-G solvation = 18.106559 kcal Electronic energy + Delta-G solvation = -30193.911766 eV Core-core repulsion = 26580.872910 eV Total energy + Delta-G solvation = -3613.038856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50344 -38.38564 -36.69295 -35.36847 -32.91582 -32.28581 -31.93465 -30.91449 -29.95536 -28.43000 -26.86577 -24.73106 -23.91880 -23.02560 -22.76377 -21.64944 -20.57057 -19.70828 -18.52612 -18.24964 -17.32055 -16.35636 -15.62333 -15.07099 -14.83347 -14.71108 -14.51753 -14.34660 -13.88483 -13.81563 -13.65594 -13.52779 -13.23346 -13.01731 -12.72769 -12.40796 -12.32035 -12.22061 -12.07197 -11.79287 -11.55412 -11.45474 -11.38137 -11.18184 -10.96225 -10.86159 -10.73350 -10.71797 -10.55612 -10.44368 -10.35916 -10.11693 -10.02534 -9.78728 -9.25284 -9.02553 -8.70792 -8.15083 -7.91224 -6.84484 -5.45882 -2.73990 2.25413 3.36197 3.45897 3.47863 3.49811 3.56352 4.63447 4.72016 4.79958 4.82108 4.83963 4.95105 5.04743 5.11140 5.20412 5.22342 5.30767 5.40520 5.43552 5.49424 5.56179 5.58584 5.62179 5.63815 5.75430 5.78887 5.79767 5.84536 5.86593 5.88928 5.97260 6.03026 6.07202 6.13465 6.15800 6.19146 6.24223 6.36955 6.43955 6.46850 6.48390 6.60543 6.71478 6.77574 6.89779 6.94672 7.05061 7.36399 8.01179 8.33758 8.71897 9.04782 9.52639 10.24778 10.46298 11.75009 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.006232 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.140621 B = 4492.056450 C = 5937.101212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.087 4.087 4 C -0.095 4.095 5 C -0.102 4.102 6 C 0.489 3.511 7 O -0.441 6.441 8 N -0.616 5.616 9 C 0.111 3.889 10 C -0.138 4.138 11 C -0.117 4.117 12 C -0.135 4.135 13 C 0.144 3.856 14 H 0.064 0.936 15 C 0.177 3.823 16 H 0.089 0.911 17 C -0.170 4.170 18 N -0.729 5.729 19 C -0.173 4.173 20 H 0.087 0.913 21 C -0.012 4.012 22 N -0.948 5.948 23 Si 0.872 3.128 24 H -0.292 1.292 25 H -0.297 1.297 26 H -0.284 1.284 27 C -0.107 4.107 28 C -0.083 4.083 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.034 0.966 46 H 0.043 0.957 47 H 0.353 0.647 48 H 0.251 0.749 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 -18.807 -8.778 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.112 4.112 3 C -0.125 4.125 4 C -0.133 4.133 5 C -0.124 4.124 6 C 0.275 3.725 7 O -0.309 6.309 8 N -0.354 5.354 9 C -0.013 4.013 10 C -0.176 4.176 11 C -0.154 4.154 12 C -0.174 4.174 13 C 0.040 3.960 14 H 0.082 0.918 15 C 0.068 3.932 16 H 0.107 0.893 17 C -0.230 4.230 18 N -0.372 5.372 19 C -0.304 4.304 20 H 0.105 0.895 21 C -0.204 4.204 22 N -0.600 5.600 23 Si 0.705 3.295 24 H -0.220 1.220 25 H -0.224 1.224 26 H -0.211 1.211 27 C -0.144 4.144 28 C -0.121 4.121 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.187 0.813 48 H 0.062 0.938 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.087 0.913 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.307 -18.152 -8.137 20.353 hybrid contribution 1.022 0.096 -1.439 1.768 sum -3.286 -18.056 -9.576 20.700 Atomic orbital electron populations 1.23573 0.95013 1.01550 1.04146 1.22040 0.95046 0.96031 0.98108 1.20871 0.97786 0.94453 0.99352 1.21331 0.96423 0.97162 0.98364 1.21287 0.95302 0.96984 0.98794 1.20529 0.82575 0.81002 0.88402 1.91053 1.72833 1.33399 1.33657 1.47956 1.28527 1.35448 1.23439 1.21662 0.97185 0.93026 0.89438 1.21942 0.95328 1.02286 0.98036 1.21497 0.98557 0.98920 0.96450 1.21943 0.97480 0.99416 0.98525 1.21507 0.86806 0.99527 0.88155 0.91822 1.20636 0.98574 0.84143 0.89845 0.89325 1.22566 1.00527 0.99385 1.00563 1.42785 1.56374 1.04082 1.33998 1.18943 1.18979 0.83359 1.09136 0.89525 1.24507 1.01277 0.95808 0.98851 1.69678 1.49481 0.98110 1.42748 0.86717 0.81398 0.76141 0.85255 1.22011 1.22369 1.21128 1.21583 0.96898 0.96732 0.99225 1.20809 0.97492 0.94846 0.98912 0.88570 0.88808 0.91087 0.91204 0.90942 0.90147 0.89968 0.92187 0.89980 0.91362 0.91608 0.92135 0.92226 0.90894 0.91233 0.92478 0.94670 0.93790 0.81260 0.93837 0.91296 0.91298 0.91342 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.17 13.99 29.02 0.41 -1.77 16 2 C -0.11 -1.29 5.35 -100.51 -0.54 -1.82 16 3 C -0.09 -1.14 6.03 -27.49 -0.17 -1.30 16 4 C -0.09 -1.53 4.51 -26.64 -0.12 -1.65 16 5 C -0.10 -1.47 1.58 -91.82 -0.14 -1.61 16 6 C 0.49 8.66 6.64 -10.99 -0.07 8.58 16 7 O -0.44 -9.92 8.77 5.56 0.05 -9.87 16 8 N -0.62 -9.28 2.98 -165.47 -0.49 -9.77 16 9 C 0.11 1.22 5.01 -3.71 -0.02 1.20 16 10 C -0.14 -1.49 6.08 -26.61 -0.16 -1.65 16 11 C -0.12 -1.32 5.89 -26.69 -0.16 -1.47 16 12 C -0.14 -1.98 4.85 -26.84 -0.13 -2.11 16 13 C 0.14 2.26 2.71 -67.82 -0.18 2.08 16 14 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 15 C 0.18 3.53 1.88 -67.93 -0.13 3.40 16 16 H 0.09 1.98 5.92 -52.17 -0.31 1.68 16 17 C -0.17 -3.08 9.11 37.16 0.34 -2.74 16 18 N -0.73 -17.55 3.39 -53.42 -0.18 -17.73 16 19 C -0.17 -5.04 8.47 -15.06 -0.13 -5.16 16 20 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.95 -31.21 13.97 55.49 0.78 -30.44 16 23 Si 0.87 23.39 27.73 -169.99 -4.71 18.68 16 24 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 25 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 26 H -0.28 -7.23 6.52 56.52 0.37 -6.86 16 27 C -0.11 -1.21 4.85 -26.63 -0.13 -1.34 16 28 C -0.08 -0.83 6.03 -27.48 -0.17 -0.99 16 29 H 0.10 0.98 7.92 -52.49 -0.42 0.56 16 30 H 0.09 0.86 7.92 -52.48 -0.42 0.44 16 31 H 0.07 0.91 7.89 -51.93 -0.41 0.50 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.08 1.59 8.11 -51.93 -0.42 1.16 16 35 H 0.08 1.10 7.05 -51.93 -0.37 0.73 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.82 5.03 -51.93 -0.26 0.56 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.02 7.02 -51.93 -0.36 0.65 16 43 H 0.07 1.24 6.05 -51.93 -0.31 0.93 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.04 0.78 7.03 -51.93 -0.36 0.41 16 47 H 0.35 8.56 3.52 -40.82 -0.14 8.42 16 48 H 0.25 7.98 8.31 -40.82 -0.34 7.64 16 49 H 0.07 0.68 6.11 -51.93 -0.32 0.36 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 52 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -33.69 377.51 -9.64 -43.34 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -9.17 Total: 8.94 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.59 Total: -8.83 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.10 Total: -57.93 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.05 Total: -9.87 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -4.71 Total: 18.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.69 -9.64 -43.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689905727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.443 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds