Wall clock time and date at job start Tue Mar 31 2020 13:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46951 * 2 1 4 4 C 1.53007 * 109.46866 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46857 * 183.70322 * 4 3 2 6 6 C 1.36736 * 127.13636 * 272.96671 * 5 4 3 7 7 C 1.50697 * 126.34874 * 359.96889 * 6 5 4 8 8 C 1.53000 * 109.47674 * 120.00041 * 7 6 5 9 9 C 1.53012 * 109.47276 * 240.00201 * 7 6 5 10 10 N 1.30293 * 107.30515 * 179.83794 * 6 5 4 11 11 N 1.28529 * 110.05601 * 0.44209 * 10 6 5 12 12 C 1.31219 * 109.85416 * 359.71854 * 11 10 6 13 13 N 1.38584 * 126.46772 * 179.97438 * 12 11 10 14 14 C 1.46849 * 111.00223 * 61.61619 * 13 12 11 15 15 C 1.53036 * 109.52459 * 174.15974 * 14 13 12 16 16 C 1.53115 * 109.27620 * 59.17803 * 15 14 13 17 17 C 1.50705 * 109.52489 * 182.44274 * 16 15 14 18 18 H 1.07990 * 120.00507 * 119.68032 * 17 16 15 19 19 C 1.37881 * 119.99762 * 299.68854 * 17 16 15 20 20 N 1.31511 * 120.00079 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00017 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47327 * 90.00023 * 21 19 17 23 23 H 1.48500 * 109.47214 * 210.00698 * 21 19 17 24 24 H 1.48507 * 109.46999 * 330.00122 * 21 19 17 25 25 C 1.53117 * 109.16547 * 302.34566 * 16 15 14 26 26 C 1.46850 * 110.99551 * 297.40609 * 13 12 11 27 27 H 1.08996 * 109.47037 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46760 * 300.00008 * 1 2 3 29 29 H 1.09002 * 109.46752 * 59.99961 * 1 2 3 30 30 H 1.08997 * 109.46760 * 239.99992 * 2 1 3 31 31 H 1.09002 * 109.46752 * 120.00038 * 2 1 3 32 32 H 1.09002 * 109.47424 * 299.99627 * 3 2 1 33 33 H 1.08997 * 109.47395 * 60.00381 * 3 2 1 34 34 H 1.08996 * 109.46650 * 303.69872 * 4 3 2 35 35 H 1.08992 * 109.47301 * 63.69995 * 4 3 2 36 36 H 1.09004 * 109.47009 * 359.97438 * 7 6 5 37 37 H 1.09000 * 109.46773 * 59.99860 * 8 7 6 38 38 H 1.08997 * 109.47228 * 180.02562 * 8 7 6 39 39 H 1.08997 * 109.46601 * 300.00323 * 8 7 6 40 40 H 1.08998 * 109.46881 * 179.97438 * 9 7 6 41 41 H 1.08995 * 109.46538 * 299.99818 * 9 7 6 42 42 H 1.09000 * 109.47141 * 59.99597 * 9 7 6 43 43 H 1.08996 * 109.46189 * 294.17561 * 14 13 12 44 44 H 1.08994 * 109.46041 * 54.14189 * 14 13 12 45 45 H 1.09001 * 109.50028 * 299.24473 * 15 14 13 46 46 H 1.08995 * 109.50503 * 179.11876 * 15 14 13 47 47 H 1.08996 * 109.52597 * 62.25417 * 16 15 14 48 48 H 0.96994 * 119.99873 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.50837 * 297.71410 * 25 16 15 50 50 H 1.09002 * 109.50702 * 177.59548 * 25 16 15 51 51 H 1.08997 * 109.46259 * 305.85363 * 26 13 12 52 52 H 1.08999 * 109.46396 * 65.82739 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8208 0.0886 6 6 4.2799 3.6867 -0.9462 7 6 4.0666 3.4017 -2.4106 8 6 3.0383 4.3829 -2.9768 9 6 5.3911 3.5624 -3.1597 10 7 4.7069 4.8048 -0.4314 11 7 4.7785 4.7020 0.8478 12 6 4.3922 3.5048 1.2210 13 7 4.3347 3.0255 2.5201 14 6 3.3963 3.8125 3.3304 15 6 3.2487 3.1693 4.7111 16 6 4.6189 3.1146 5.3923 17 6 4.4904 2.4279 6.7277 18 1 5.0455 1.5228 6.9252 19 6 3.6640 2.9551 7.6973 20 7 3.5515 2.3556 8.8624 21 14 2.7042 4.5209 7.3560 22 1 1.3839 4.1746 6.7709 23 1 2.5034 5.2651 8.6253 24 1 3.4623 5.3678 6.4003 25 6 5.5903 2.3308 4.5054 26 6 5.6700 2.9984 3.1305 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 3.9337 0.8722 0.8541 35 1 3.9330 0.9873 -0.9221 36 1 3.7019 2.3818 -2.5329 37 1 3.4034 5.4026 -2.8545 38 1 2.8837 4.1764 -4.0358 39 1 2.0948 4.2684 -2.4431 40 1 5.2369 3.3558 -4.2187 41 1 5.7562 4.5820 -3.0374 42 1 6.1238 2.8633 -2.7564 43 1 3.7758 4.8282 3.4416 44 1 2.4249 3.8400 2.8368 45 1 2.8563 2.1583 4.6015 46 1 2.5642 3.7623 5.3176 47 1 4.9944 4.1275 5.5373 48 1 2.9704 2.7268 9.5446 49 1 5.2346 1.3066 4.3926 50 1 6.5787 2.3248 4.9649 51 1 6.3499 2.4345 2.4919 52 1 6.0389 4.0179 3.2427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001695222837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:42 Heat of formation + Delta-G solvation = 59.002351 kcal Electronic energy + Delta-G solvation = -28620.484146 eV Core-core repulsion = 25041.511416 eV Total energy + Delta-G solvation = -3578.972730 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.96245 -38.62845 -36.74355 -35.80627 -34.16026 -33.64789 -31.67795 -30.40012 -29.29055 -28.79303 -27.45919 -25.93122 -24.52698 -23.50301 -22.76990 -22.23776 -21.54005 -20.64236 -20.00380 -18.74734 -17.27600 -16.75456 -16.48549 -16.10235 -15.73574 -15.24160 -14.64471 -14.46758 -14.36798 -14.11711 -13.69437 -13.53379 -13.34315 -13.17217 -12.92591 -12.89123 -12.45245 -12.36057 -12.20935 -11.99567 -11.90080 -11.88821 -11.67966 -11.54514 -11.52363 -11.33629 -11.19398 -10.96523 -10.92014 -10.65164 -10.43507 -10.21395 -10.03469 -9.98288 -9.70494 -9.19856 -9.00958 -8.83683 -8.54647 -8.47036 -6.07812 -4.06680 1.75569 2.25137 2.90787 3.25696 3.38697 3.40007 3.88084 4.07062 4.35415 4.40558 4.46582 4.51300 4.74847 4.78952 4.81663 4.93682 5.12552 5.16584 5.21820 5.23415 5.32008 5.35114 5.36678 5.45722 5.48430 5.51696 5.55405 5.61965 5.63325 5.73782 5.79466 5.82651 5.85625 5.87951 5.94374 5.98269 6.00027 6.02406 6.07891 6.12558 6.25648 6.35569 6.60092 6.64648 6.72446 6.89867 7.06698 7.25271 7.45645 7.57517 7.76267 8.51789 8.83376 8.96453 9.55041 11.05534 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.003753 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.557847 B = 7459.896422 C = 8400.131367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.133 4.133 4 C 0.110 3.890 5 N -0.464 5.464 6 C 0.174 3.826 7 C -0.001 4.001 8 C -0.141 4.141 9 C -0.141 4.141 10 N -0.285 5.285 11 N -0.314 5.314 12 C 0.358 3.642 13 N -0.462 5.462 14 C 0.070 3.930 15 C -0.115 4.115 16 C 0.012 3.988 17 C -0.510 4.510 18 H 0.074 0.926 19 C 0.070 3.930 20 N -0.902 5.902 21 Si 0.882 3.118 22 H -0.279 1.279 23 H -0.297 1.297 24 H -0.264 1.264 25 C -0.094 4.094 26 C 0.069 3.931 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.027 0.973 48 H 0.263 0.737 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 -3.448 -25.052 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.171 4.171 4 C -0.012 4.012 5 N -0.156 5.156 6 C -0.093 4.093 7 C -0.022 4.022 8 C -0.199 4.199 9 C -0.199 4.199 10 N -0.126 5.126 11 N -0.158 5.158 12 C 0.002 3.998 13 N -0.189 5.189 14 C -0.057 4.057 15 C -0.153 4.153 16 C -0.007 4.007 17 C -0.548 4.548 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.540 5.540 21 Si 0.712 3.288 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.189 1.189 25 C -0.132 4.132 26 C -0.058 4.058 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.045 0.955 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.081 0.919 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.487 -2.516 -24.757 25.009 hybrid contribution -0.920 0.188 0.036 0.939 sum -3.407 -2.328 -24.721 25.063 Atomic orbital electron populations 1.21747 0.95329 1.01854 1.01995 1.21428 0.96429 0.95361 1.02539 1.21967 0.93402 0.98408 1.03323 1.21931 0.95471 0.79155 1.04686 1.46428 1.49216 1.13695 1.06306 1.24701 1.04161 0.87980 0.92471 1.19527 0.97912 1.00511 0.84279 1.21796 0.97804 0.99843 1.00424 1.21806 0.95300 1.03390 0.99436 1.73936 1.17585 1.19435 1.01623 1.74679 1.20625 1.15407 1.05074 1.22605 1.00565 0.88169 0.88463 1.58815 1.12085 1.52309 0.95716 1.22251 0.93636 0.95250 0.94566 1.22076 1.01047 1.00584 0.91571 1.19210 0.90533 0.96412 0.94536 1.21013 1.26858 1.11431 0.95507 0.90761 1.25012 0.96458 0.96738 0.94935 1.69892 1.38923 1.40014 1.05160 0.86920 0.80613 0.84350 0.76867 1.20568 1.22422 1.18947 1.21537 1.00503 0.99796 0.91379 1.22279 0.85998 1.00654 0.96873 0.92455 0.92403 0.92893 0.91850 0.91095 0.91613 0.90708 0.87582 0.89324 0.89897 0.91190 0.91576 0.92684 0.91569 0.91180 0.92659 0.93524 0.92081 0.91085 0.92727 0.95530 0.92687 0.91659 0.91541 0.91885 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.13 -1.19 5.54 -26.73 -0.15 -1.34 16 4 C 0.11 1.07 5.83 -4.04 -0.02 1.05 16 5 N -0.46 -6.19 2.81 -114.09 -0.32 -6.51 16 6 C 0.17 2.30 6.58 -154.02 -1.01 1.28 16 7 C 0.00 -0.01 3.29 -91.77 -0.30 -0.31 16 8 C -0.14 -1.13 9.18 37.16 0.34 -0.79 16 9 C -0.14 -1.12 9.18 37.16 0.34 -0.78 16 10 N -0.29 -4.79 12.18 32.99 0.40 -4.38 16 11 N -0.31 -5.86 12.19 30.31 0.37 -5.49 16 12 C 0.36 5.97 6.41 -318.87 -2.04 3.92 16 13 N -0.46 -7.93 4.67 -174.55 -0.82 -8.74 16 14 C 0.07 1.30 5.38 -3.83 -0.02 1.27 16 15 C -0.11 -2.42 4.84 -26.65 -0.13 -2.55 16 16 C 0.01 0.27 1.75 -91.65 -0.16 0.11 16 17 C -0.51 -13.96 9.14 -34.44 -0.31 -14.27 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 20 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 21 Si 0.88 21.82 24.37 -169.99 -4.14 17.68 16 22 H -0.28 -6.67 6.89 56.52 0.39 -6.28 16 23 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 24 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 25 C -0.09 -1.81 5.32 -26.65 -0.14 -1.95 16 26 C 0.07 1.19 5.39 -3.83 -0.02 1.17 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.09 0.63 7.36 -51.93 -0.38 0.25 16 36 H 0.08 0.57 7.02 -51.93 -0.36 0.21 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 45 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.05 1.22 3.38 -51.93 -0.18 1.05 16 47 H 0.03 0.64 7.19 -51.93 -0.37 0.27 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 49 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 51 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 52 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 401.95 15.07 6.06 6.06 Total: -1.00 -31.96 401.95 -10.97 -42.93 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -9.77 Total: -1.86 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -3.52 Total: -13.10 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: 0.41 Total: -51.69 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.96 -10.97 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001695222837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.930 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds