Wall clock time and date at job start Tue Mar 31 2020 12:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99414 * 2 1 4 4 C 1.52996 * 109.46934 * 125.00446 * 3 2 1 5 5 C 1.53002 * 109.47647 * 64.99131 * 4 3 2 6 6 C 1.50700 * 109.47561 * 184.58943 * 5 4 3 7 7 C 1.30995 * 119.99678 * 125.78415 * 6 5 4 8 8 C 1.50694 * 109.47336 * 184.99675 * 4 3 2 9 9 O 1.21284 * 119.99834 * 273.85767 * 8 4 3 10 10 N 1.34781 * 120.00438 * 93.85296 * 8 4 3 11 11 C 1.46926 * 120.62575 * 354.84852 * 10 8 4 12 12 C 1.53187 * 108.89516 * 126.46546 * 11 10 8 13 13 C 1.53040 * 109.31186 * 54.55810 * 12 11 10 14 14 C 1.53035 * 109.54340 * 298.63700 * 13 12 11 15 15 H 1.08997 * 109.49542 * 301.38437 * 14 13 12 16 16 C 1.53000 * 109.50393 * 181.31408 * 14 13 12 17 17 N 1.46500 * 109.46789 * 64.99730 * 16 14 13 18 18 C 1.46494 * 120.00339 * 270.00266 * 17 16 14 19 19 C 1.36944 * 119.99597 * 90.00088 * 17 16 14 20 20 H 1.07990 * 119.99961 * 24.85341 * 19 17 16 21 21 C 1.38812 * 119.99679 * 204.84696 * 19 17 16 22 22 N 1.31615 * 120.00227 * 5.80700 * 21 19 17 23 23 Si 1.86805 * 119.99672 * 185.80451 * 21 19 17 24 24 H 1.48496 * 109.47013 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46807 * 120.00333 * 23 21 19 26 26 H 1.48496 * 109.46928 * 240.00218 * 23 21 19 27 27 C 1.46959 * 120.65676 * 174.66400 * 10 8 4 28 28 H 1.08004 * 120.00032 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99903 * 180.02562 * 1 2 3 30 30 H 1.07991 * 120.00101 * 180.02562 * 2 1 3 31 31 H 1.08989 * 109.47544 * 4.99754 * 3 2 1 32 32 H 1.09009 * 109.46848 * 244.99523 * 3 2 1 33 33 H 1.09008 * 109.47209 * 304.99708 * 4 3 2 34 34 H 1.08998 * 109.47253 * 304.59610 * 5 4 3 35 35 H 1.09004 * 109.46759 * 64.59357 * 5 4 3 36 36 H 1.07994 * 119.99681 * 305.78667 * 6 5 4 37 37 H 1.08006 * 119.99750 * 180.02562 * 7 6 5 38 38 H 1.07994 * 120.00640 * 0.02562 * 7 6 5 39 39 H 1.08996 * 109.58973 * 6.60355 * 11 10 8 40 40 H 1.09004 * 109.58069 * 246.32358 * 11 10 8 41 41 H 1.08997 * 109.49704 * 174.50671 * 12 11 10 42 42 H 1.09000 * 109.49791 * 294.61105 * 12 11 10 43 43 H 1.09004 * 109.45888 * 58.65624 * 13 12 11 44 44 H 1.08996 * 109.46055 * 178.61236 * 13 12 11 45 45 H 1.08993 * 109.47637 * 185.00063 * 16 14 13 46 46 H 1.08999 * 109.47123 * 305.00426 * 16 14 13 47 47 H 1.09000 * 109.47557 * 95.22663 * 18 17 16 48 48 H 1.09002 * 109.47151 * 215.22769 * 18 17 16 49 49 H 1.08998 * 109.47212 * 335.22602 * 18 17 16 50 50 H 0.97006 * 119.99982 * 179.97438 * 22 21 19 51 51 H 1.08999 * 109.46486 * 113.74800 * 27 10 8 52 52 H 1.09003 * 109.59376 * 353.39606 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1815 5 6 4.0999 0.2510 0.9921 6 6 4.9893 0.2031 2.2077 7 6 5.1663 -0.9273 2.8455 8 6 3.6990 2.6840 1.2541 9 8 4.6981 2.9044 0.6028 10 7 3.1825 3.6474 2.0426 11 6 1.9122 3.4349 2.7496 12 6 2.1211 3.7170 4.2407 13 6 2.7093 5.1193 4.4130 14 6 4.0677 5.1943 3.7123 15 1 4.7367 4.4444 4.1344 16 6 4.6698 6.5865 3.9128 17 7 4.9553 6.7948 5.3345 18 6 3.9350 7.3784 6.2088 19 6 6.1762 6.4439 5.8462 20 1 7.0402 6.4004 5.1999 21 6 6.3030 6.1444 7.1957 22 7 5.2332 6.0858 7.9602 23 14 7.9921 5.8245 7.9267 24 1 9.0228 5.9508 6.8651 25 1 8.2628 6.8151 8.9993 26 1 8.0332 4.4540 8.4967 27 6 3.8808 4.9289 2.2151 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4027 -0.9314 33 1 2.4883 1.1469 2.1060 34 1 3.6153 -0.7161 0.8581 35 1 4.6999 0.4819 0.1118 36 1 5.4807 1.1007 2.5529 37 1 5.8035 -0.9616 3.7170 38 1 4.6753 -1.8250 2.5001 39 1 1.5872 2.4033 2.6150 40 1 1.1554 4.1113 2.3523 41 1 1.1645 3.6575 4.7598 42 1 2.8083 2.9806 4.6575 43 1 2.0333 5.8531 3.9739 44 1 2.8360 5.3321 5.4744 45 1 5.5939 6.6687 3.3408 46 1 3.9620 7.3413 3.5701 47 1 3.3840 6.5807 6.7072 48 1 4.4150 8.0102 6.9562 49 1 3.2466 7.9785 5.6138 50 1 5.3218 5.8761 8.9031 51 1 3.2864 5.7288 1.7737 52 1 4.8548 4.8830 1.7278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752507940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:40 Heat of formation + Delta-G solvation = 13.956172 kcal Electronic energy + Delta-G solvation = -28445.928255 eV Core-core repulsion = 24832.709425 eV Total energy + Delta-G solvation = -3613.218830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.40447 -37.90952 -36.38312 -35.49191 -34.37877 -32.81996 -31.57166 -31.23668 -30.14033 -26.50177 -26.30809 -25.72205 -25.26619 -23.09007 -22.29173 -20.87587 -20.21077 -19.84956 -19.31254 -18.49349 -17.42414 -16.63136 -15.83848 -15.74025 -15.24258 -14.86083 -14.76148 -14.33572 -14.14966 -13.88929 -13.75744 -13.40053 -13.25260 -13.01915 -12.93340 -12.78819 -12.69575 -12.48222 -12.22531 -11.65149 -11.50077 -11.39417 -11.20217 -11.14133 -10.91731 -10.86709 -10.81528 -10.67243 -10.48289 -10.33237 -10.10621 -9.92900 -9.81460 -9.70729 -9.64565 -9.40151 -9.35000 -8.54235 -8.37234 -6.68206 -5.69830 -3.17037 1.96222 2.26877 2.75383 3.14037 3.38849 3.46358 3.48363 4.33182 4.52308 4.62192 4.66390 4.83581 4.87166 4.95150 5.13122 5.18526 5.22537 5.26537 5.31516 5.35672 5.45693 5.51427 5.52865 5.57627 5.63774 5.75167 5.78310 5.81655 5.90598 5.96964 5.98641 6.03449 6.14512 6.19750 6.28421 6.32695 6.44585 6.46538 6.57642 6.64303 6.73171 6.75456 6.78070 6.82437 7.01784 7.14630 7.42849 7.57442 7.79393 7.85690 8.31497 8.44953 9.28593 9.90617 10.40263 11.34768 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.003452 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.227875 B = 8108.267399 C = 8944.601000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.151 4.151 3 C -0.083 4.083 4 C -0.101 4.101 5 C -0.078 4.078 6 C -0.148 4.148 7 C -0.198 4.198 8 C 0.519 3.481 9 O -0.544 6.544 10 N -0.605 5.605 11 C 0.105 3.895 12 C -0.134 4.134 13 C -0.111 4.111 14 C -0.118 4.118 15 H 0.074 0.926 16 C 0.159 3.841 17 N -0.600 5.600 18 C 0.165 3.835 19 C -0.249 4.249 20 H 0.067 0.933 21 C 0.003 3.997 22 N -0.910 5.910 23 Si 0.902 3.098 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.116 3.884 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.088 0.912 45 H 0.043 0.957 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.041 0.959 49 H -0.007 1.007 50 H 0.250 0.750 51 H 0.060 0.940 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 -11.118 -13.627 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.169 4.169 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.166 4.166 7 C -0.234 4.234 8 C 0.307 3.693 9 O -0.421 6.421 10 N -0.338 5.338 11 C -0.018 4.018 12 C -0.172 4.172 13 C -0.148 4.148 14 C -0.140 4.140 15 H 0.092 0.908 16 C 0.031 3.969 17 N -0.322 5.322 18 C 0.021 3.979 19 C -0.379 4.379 20 H 0.085 0.915 21 C -0.195 4.195 22 N -0.555 5.555 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.007 4.007 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.106 0.894 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.060 0.940 49 H 0.012 0.988 50 H 0.061 0.939 51 H 0.078 0.922 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.728 -10.981 -13.782 20.630 hybrid contribution 0.790 -0.332 0.768 1.151 sum -9.937 -11.312 -13.014 19.902 Atomic orbital electron populations 1.23878 0.95879 1.01938 1.01255 1.22929 0.95916 0.98254 0.99762 1.20675 0.97381 0.96006 0.97959 1.21361 0.97198 0.93040 1.00620 1.20706 0.95371 0.97591 0.97865 1.23007 0.98309 0.98877 0.96444 1.23802 1.02070 0.97177 1.00395 1.20483 0.84284 0.85588 0.78925 1.90672 1.26003 1.81517 1.43908 1.48194 1.23302 1.16104 1.46150 1.21837 0.85237 1.01512 0.93199 1.21917 1.01317 0.99516 0.94435 1.21578 0.95557 0.94384 1.03281 1.22238 0.97492 1.02223 0.92089 0.90771 1.20788 0.97062 0.92007 0.87023 1.43900 1.13567 1.71226 1.03543 1.20863 0.89921 0.95337 0.91772 1.19256 0.85927 1.39879 0.92870 0.91519 1.25072 0.96914 1.00016 0.97485 1.70044 1.26494 1.53587 1.05418 0.86211 0.84020 0.77515 0.79026 1.20352 1.21724 1.21749 1.21781 0.97639 0.83284 0.97977 0.88527 0.88441 0.87056 0.90975 0.90025 0.88685 0.90711 0.89654 0.87293 0.88491 0.88818 0.90132 0.91592 0.91351 0.91649 0.93275 0.89395 0.93818 0.94502 0.94970 0.93992 0.98817 0.93936 0.92210 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 14.32 29.01 0.42 -0.91 16 2 C -0.15 -1.14 9.03 -36.03 -0.33 -1.47 16 3 C -0.08 -0.74 5.11 -27.88 -0.14 -0.88 16 4 C -0.10 -1.09 1.47 -91.78 -0.13 -1.23 16 5 C -0.08 -0.85 4.77 -27.88 -0.13 -0.98 16 6 C -0.15 -1.86 9.07 -36.02 -0.33 -2.19 16 7 C -0.20 -2.18 14.32 29.02 0.42 -1.77 16 8 C 0.52 7.52 5.92 -10.99 -0.07 7.46 16 9 O -0.54 -9.75 15.57 5.55 0.09 -9.67 16 10 N -0.61 -8.55 2.98 -172.75 -0.51 -9.06 16 11 C 0.11 1.22 6.30 -3.71 -0.02 1.19 16 12 C -0.13 -1.83 6.08 -26.61 -0.16 -1.99 16 13 C -0.11 -1.85 4.78 -26.69 -0.13 -1.97 16 14 C -0.12 -2.15 2.55 -90.50 -0.23 -2.38 16 15 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 16 C 0.16 3.22 5.18 -4.04 -0.02 3.20 16 17 N -0.60 -14.79 2.75 -181.13 -0.50 -15.29 16 18 C 0.17 3.99 7.84 59.84 0.47 4.46 16 19 C -0.25 -6.84 9.67 -15.06 -0.15 -6.99 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 21 C 0.00 0.08 5.24 -17.43 -0.09 -0.01 16 22 N -0.91 -26.10 10.45 55.49 0.58 -25.52 16 23 Si 0.90 22.06 29.56 -169.99 -5.02 17.04 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.12 1.82 5.70 -3.69 -0.02 1.80 16 28 H 0.10 0.63 7.84 -52.48 -0.41 0.22 16 29 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 30 H 0.11 0.76 6.87 -52.49 -0.36 0.40 16 31 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 32 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.10 0.97 5.98 -51.92 -0.31 0.66 16 34 H 0.07 0.64 6.21 -51.93 -0.32 0.32 16 35 H 0.09 1.02 7.69 -51.93 -0.40 0.62 16 36 H 0.11 1.65 7.74 -52.49 -0.41 1.24 16 37 H 0.10 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.09 0.86 7.84 -52.49 -0.41 0.45 16 39 H 0.08 0.77 5.35 -51.93 -0.28 0.50 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 1.79 5.46 -51.93 -0.28 1.51 16 45 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 46 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 47 H 0.03 0.82 5.84 -51.93 -0.30 0.52 16 48 H 0.04 1.10 7.27 -51.93 -0.38 0.73 16 49 H -0.01 -0.14 7.83 -51.93 -0.41 -0.55 16 50 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 52 H 0.09 1.50 7.04 -51.93 -0.37 1.14 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -30.59 401.85 -9.18 -39.78 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -9.22 Total: 1.33 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -0.65 Total: -4.66 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: -0.43 Total: -49.88 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.59 -9.18 -39.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752507940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.731 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds