Wall clock time and date at job start Tue Mar 31 2020 12:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 119.99728 * 2 1 4 4 H 1.08001 * 119.99745 * 204.43827 * 3 2 1 5 5 C 1.38809 * 120.00229 * 24.43638 * 3 2 1 6 6 N 1.31616 * 120.00034 * 10.25614 * 5 3 2 7 7 Si 1.86800 * 120.00212 * 190.24759 * 5 3 2 8 8 H 1.48507 * 109.46902 * 60.00541 * 7 5 3 9 9 H 1.48501 * 109.47154 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47463 * 300.00605 * 7 5 3 11 11 C 1.46494 * 120.00005 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47192 * 270.00017 * 11 2 1 13 13 C 1.53000 * 109.47079 * 180.02562 * 12 11 2 14 14 C 1.53040 * 109.46156 * 184.99620 * 13 12 11 15 15 C 1.53186 * 109.31462 * 178.61251 * 14 13 12 16 16 N 1.46928 * 108.77587 * 54.64259 * 15 14 13 17 17 C 1.34776 * 120.63449 * 126.38854 * 16 15 14 18 18 O 1.21278 * 120.00084 * 353.49009 * 17 16 15 19 19 C 1.50703 * 119.99773 * 173.48563 * 17 16 15 20 20 C 1.52998 * 115.54807 * 188.26352 * 19 17 16 21 21 C 1.53001 * 117.49808 * 34.20786 * 20 19 17 22 22 C 1.53003 * 60.00092 * 252.50986 * 21 20 19 23 23 C 1.52997 * 117.49950 * 42.56070 * 19 17 16 24 24 C 1.52994 * 117.49949 * 333.93727 * 19 17 16 25 25 C 1.46926 * 118.73442 * 306.38854 * 16 15 14 26 26 C 1.53042 * 109.46037 * 64.93239 * 13 12 11 27 27 H 1.08996 * 109.47202 * 265.77665 * 1 2 3 28 28 H 1.09002 * 109.47396 * 25.77539 * 1 2 3 29 29 H 1.09002 * 109.47020 * 145.78000 * 1 2 3 30 30 H 0.96999 * 120.00670 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.47018 * 149.99813 * 11 2 1 32 32 H 1.08999 * 109.47364 * 30.00193 * 11 2 1 33 33 H 1.08993 * 109.47665 * 60.00157 * 12 11 2 34 34 H 1.09004 * 109.47164 * 299.99586 * 12 11 2 35 35 H 1.08994 * 109.45182 * 304.96662 * 13 12 11 36 36 H 1.09005 * 109.50119 * 298.57273 * 14 13 12 37 37 H 1.09001 * 109.49371 * 58.66408 * 14 13 12 38 38 H 1.09010 * 109.58581 * 174.42233 * 15 14 13 39 39 H 1.08996 * 109.59046 * 294.85097 * 15 14 13 40 40 H 1.08994 * 115.55180 * 179.91650 * 20 19 17 41 41 H 1.09000 * 117.50099 * 359.97438 * 21 20 19 42 42 H 1.09002 * 117.49773 * 145.01826 * 21 20 19 43 43 H 1.08995 * 117.49677 * 252.51001 * 22 21 20 44 44 H 1.08996 * 117.51901 * 107.48352 * 22 21 20 45 45 H 1.09000 * 117.49573 * 359.97438 * 23 19 17 46 46 H 1.08992 * 117.49966 * 145.01497 * 23 19 17 47 47 H 1.09001 * 117.49730 * 214.97854 * 24 19 17 48 48 H 1.08999 * 117.50389 * 359.97438 * 24 19 17 49 49 H 1.09002 * 109.58737 * 293.82316 * 25 16 15 50 50 H 1.08996 * 109.58725 * 173.39503 * 25 16 15 51 51 H 1.09004 * 109.49869 * 301.33834 * 26 13 12 52 52 H 1.08994 * 109.50059 * 61.43468 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1571 1.2278 -0.3870 5 6 1.5489 2.3342 0.4973 6 7 0.4089 2.2507 1.1498 7 14 2.3583 3.9980 0.2406 8 1 2.4918 4.2644 -1.2143 9 1 1.5231 5.0562 0.8634 10 1 3.7038 3.9962 0.8689 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 6 3.2181 -3.0357 1.4411 14 6 3.3642 -3.5408 2.8783 15 6 4.1006 -4.8841 2.8708 16 7 5.3740 -4.7213 2.1562 17 6 6.5369 -5.0819 2.7342 18 8 6.5537 -5.4344 3.8945 19 6 7.8163 -5.0473 1.9386 20 6 9.0379 -5.6601 2.6265 21 6 8.8040 -6.8657 3.5390 22 6 9.1466 -5.5030 4.1445 23 6 8.0494 -3.8403 1.0277 24 6 7.7085 -5.2026 0.4204 25 6 5.3555 -4.1579 0.7993 26 6 4.6050 -2.8228 0.8300 27 1 -0.3633 -0.0757 1.0248 28 1 -0.3634 0.9254 -0.4469 29 1 -0.3633 -0.8498 -0.5779 30 1 -0.0108 3.0530 1.4977 31 1 3.1500 -1.1381 -0.5144 32 1 1.6085 -2.0281 -0.5148 33 1 1.5002 -1.8416 1.9555 34 1 3.0417 -0.9516 1.9559 35 1 2.6706 -3.7711 0.8516 36 1 3.9331 -2.8172 3.4623 37 1 2.3764 -3.6699 3.3207 38 1 4.2948 -5.2000 3.8959 39 1 3.4907 -5.6324 2.3649 40 1 9.9629 -5.6364 2.0505 41 1 7.7799 -7.2221 3.6496 42 1 9.5753 -7.6356 3.5633 43 1 10.1433 -5.3764 4.5673 44 1 8.3482 -4.9628 4.6531 45 1 7.2771 -3.0715 1.0036 46 1 9.0731 -3.4825 0.9185 47 1 8.5081 -5.7410 -0.0885 48 1 6.7123 -5.3302 -0.0031 49 1 4.8478 -4.8471 0.1244 50 1 6.3775 -3.9948 0.4575 51 1 4.5003 -2.4408 -0.1856 52 1 5.1622 -2.1061 1.4331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753820246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:14 Heat of formation + Delta-G solvation = 60.087767 kcal Electronic energy + Delta-G solvation = -28210.058099 eV Core-core repulsion = 24598.839685 eV Total energy + Delta-G solvation = -3611.218414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.221 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25874 -39.44105 -38.32318 -37.71060 -36.59124 -34.73280 -33.06094 -31.95231 -30.24938 -27.92968 -27.13640 -25.56841 -24.59360 -23.91090 -23.54920 -22.93288 -22.79676 -21.65108 -21.05067 -19.88660 -18.72161 -17.67212 -17.08726 -16.83384 -16.54438 -16.14906 -16.09026 -15.67373 -15.44684 -15.18566 -15.02487 -14.82800 -14.66887 -14.31729 -14.01791 -13.91292 -13.46775 -13.20924 -12.96150 -12.87221 -12.74921 -12.56574 -12.53904 -12.42214 -12.32925 -12.18486 -12.07851 -12.05770 -12.01321 -11.81496 -11.65796 -11.46437 -11.30190 -11.14585 -10.76419 -10.58823 -10.45529 -10.38221 -9.61002 -8.72031 -7.83444 -5.29893 1.42704 1.46226 1.48232 1.54731 1.97750 2.52045 2.64128 3.22330 3.32185 3.35564 3.45865 3.65866 3.73057 3.81627 3.92341 3.95450 4.04044 4.12981 4.21853 4.29257 4.34476 4.36230 4.40625 4.48332 4.57950 4.64436 4.74593 4.77715 4.81824 4.83755 4.85599 4.90009 4.90247 4.94940 5.01586 5.06360 5.08465 5.12095 5.13926 5.22050 5.29292 5.33512 5.35291 5.43048 5.48834 5.58751 5.61553 5.67128 5.73241 6.37652 6.42730 7.16388 7.17614 7.91109 8.35324 9.22325 Molecular weight = 320.22amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.002742 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.054733 B =10207.535678 C =10721.548567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.623 5.623 3 C -0.257 4.257 4 H 0.072 0.928 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.967 3.033 8 H -0.275 1.275 9 H -0.297 1.297 10 H -0.276 1.276 11 C 0.150 3.850 12 C -0.116 4.116 13 C -0.073 4.073 14 C -0.122 4.122 15 C 0.117 3.883 16 N -0.605 5.605 17 C 0.540 3.460 18 O -0.573 6.573 19 C -0.147 4.147 20 C -0.102 4.102 21 C -0.171 4.171 22 C -0.184 4.184 23 C -0.163 4.163 24 C -0.154 4.154 25 C 0.049 3.951 26 C -0.128 4.128 27 H -0.011 1.011 28 H 0.029 0.971 29 H 0.026 0.974 30 H 0.246 0.754 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.026 0.974 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.136 0.864 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.114 0.886 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.091 0.909 50 H 0.153 0.847 51 H 0.091 0.909 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.464 -19.301 -3.279 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.346 5.346 3 C -0.387 4.387 4 H 0.090 0.910 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.796 3.204 8 H -0.201 1.201 9 H -0.224 1.224 10 H -0.202 1.202 11 C 0.025 3.975 12 C -0.156 4.156 13 C -0.092 4.092 14 C -0.161 4.161 15 C -0.006 4.006 16 N -0.337 5.337 17 C 0.330 3.670 18 O -0.453 6.453 19 C -0.150 4.150 20 C -0.121 4.121 21 C -0.208 4.208 22 C -0.221 4.221 23 C -0.199 4.199 24 C -0.190 4.190 25 C -0.071 4.071 26 C -0.166 4.166 27 H 0.007 0.993 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.154 0.846 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.100 0.900 45 H 0.131 0.869 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.148 0.852 49 H 0.109 0.891 50 H 0.170 0.830 51 H 0.109 0.891 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.343 -19.363 -2.630 25.474 hybrid contribution -0.445 1.426 0.876 1.732 sum 15.898 -17.937 -1.754 24.032 Atomic orbital electron populations 1.20523 0.83211 0.97033 0.96176 1.44261 1.02072 1.02139 1.86163 1.19523 0.99216 0.87027 1.32975 0.91002 1.25839 0.98662 1.02127 0.98636 1.70218 1.20208 1.27821 1.40782 0.85335 0.77641 0.79528 0.77927 1.20069 1.22356 1.20221 1.21070 0.95761 0.86357 0.94326 1.22015 0.98164 0.95882 0.99574 1.21050 0.96215 0.96309 0.95664 1.21889 1.00368 0.96367 0.97459 1.21555 0.83984 0.97115 0.97899 1.48122 1.05890 1.62210 1.17524 1.20083 0.84620 0.75882 0.86435 1.90605 1.86367 1.50074 1.18254 1.20942 0.93000 1.07514 0.93557 1.21529 0.96558 1.01792 0.92179 1.22897 1.02178 0.91520 1.04199 1.23061 1.02304 1.00990 0.95695 1.23580 1.05233 0.91255 0.99834 1.23952 1.06249 0.98537 0.90311 1.23632 1.06543 0.94519 0.82430 1.22015 0.95205 0.97132 1.02267 0.99274 0.95171 0.95616 0.94443 0.92605 0.92632 0.94896 0.95527 0.89623 0.94021 0.90715 0.90920 0.89651 0.84633 0.90595 0.87568 0.88164 0.89963 0.86862 0.85592 0.85375 0.85177 0.89127 0.82999 0.89083 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.84 9.04 127.77 1.15 10.00 16 2 N -0.62 -31.24 2.92 -726.94 -2.12 -33.36 16 3 C -0.26 -14.07 9.65 84.03 0.81 -13.26 16 4 H 0.07 3.76 7.84 -2.91 -0.02 3.74 16 5 C -0.06 -3.29 5.10 84.86 0.43 -2.86 16 6 N -0.94 -56.81 10.70 21.65 0.23 -56.58 16 7 Si 0.97 45.25 29.57 68.60 2.03 47.28 16 8 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 9 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 C 0.15 5.74 5.47 86.38 0.47 6.21 16 12 C -0.12 -4.18 5.01 30.59 0.15 -4.02 16 13 C -0.07 -1.86 2.15 -10.77 -0.02 -1.89 16 14 C -0.12 -3.14 5.36 30.67 0.16 -2.98 16 15 C 0.12 2.68 6.44 86.36 0.56 3.24 16 16 N -0.61 -13.14 2.97 -818.90 -2.43 -15.58 16 17 C 0.54 13.33 7.16 87.66 0.63 13.95 16 18 O -0.57 -18.10 11.35 -3.02 -0.03 -18.13 16 19 C -0.15 -2.59 2.47 -52.93 -0.13 -2.72 16 20 C -0.10 -1.77 5.85 -10.79 -0.06 -1.83 16 21 C -0.17 -3.42 9.67 30.60 0.30 -3.12 16 22 C -0.18 -3.95 9.66 30.60 0.30 -3.65 16 23 C -0.16 -2.07 9.04 30.59 0.28 -1.79 16 24 C -0.15 -1.60 9.03 30.59 0.28 -1.32 16 25 C 0.05 0.79 3.88 86.36 0.34 1.13 16 26 C -0.13 -2.78 4.93 30.67 0.15 -2.63 16 27 H -0.01 -0.61 7.83 -2.39 -0.02 -0.63 16 28 H 0.03 1.65 6.72 -2.39 -0.02 1.63 16 29 H 0.03 1.09 7.95 -2.39 -0.02 1.07 16 30 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.06 1.99 6.43 -2.38 -0.02 1.97 16 32 H 0.06 1.88 7.93 -2.39 -0.02 1.86 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.92 7.00 -2.38 -0.02 1.90 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.92 6.55 -2.39 -0.02 1.90 16 42 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.08 2.33 6.01 -2.39 -0.01 2.32 16 45 H 0.11 1.62 5.74 -2.39 -0.01 1.61 16 46 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.13 1.18 4.93 -2.39 -0.01 1.17 16 49 H 0.09 1.13 7.84 -2.39 -0.02 1.11 16 50 H 0.15 1.93 1.69 -5.92 -0.01 1.92 16 51 H 0.09 1.85 6.50 -2.38 -0.02 1.83 16 52 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 Total: -1.00 -70.82 385.64 4.34 -66.48 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.89 Total: 17.44 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 5.79 Total: -7.54 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -4.33 Total: -105.52 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.03 Total: -18.13 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.82 4.34 -66.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753820246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.563 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds