Wall clock time and date at job start Tue Mar 31 2020 13:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47119 * 2 1 4 4 N 1.30295 * 126.34716 * 274.92492 * 3 2 1 5 5 N 1.28532 * 110.05525 * 179.69055 * 4 3 2 6 6 C 1.31218 * 109.85936 * 0.44945 * 5 4 3 7 7 N 1.38578 * 126.47264 * 179.82456 * 6 5 4 8 8 C 1.46904 * 110.99602 * 251.88210 * 7 6 5 9 9 C 1.50695 * 109.47062 * 60.99080 * 8 7 6 10 10 H 1.08007 * 120.00498 * 4.21579 * 9 8 7 11 11 C 1.37872 * 120.00094 * 184.21594 * 9 8 7 12 12 N 1.31510 * 119.99967 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00027 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47030 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46871 * 120.00064 * 13 11 9 16 16 H 1.48499 * 109.47101 * 239.99993 * 13 11 9 17 17 C 1.46891 * 111.00123 * 15.83961 * 7 6 5 18 18 C 1.53000 * 109.47548 * 164.01491 * 17 7 6 19 19 C 1.52999 * 109.47297 * 181.36646 * 18 17 7 20 20 C 1.53003 * 109.46886 * 294.99563 * 19 18 17 21 21 C 1.53005 * 109.46781 * 175.00092 * 19 18 17 22 22 N 1.36454 * 107.05468 * 359.56074 * 6 5 4 23 23 C 1.46496 * 127.14150 * 180.24237 * 22 6 5 24 24 H 1.08994 * 115.55067 * 248.93692 * 23 22 6 25 25 C 1.52998 * 117.50168 * 103.25775 * 23 22 6 26 26 C 1.53004 * 117.49777 * 34.59885 * 23 22 6 27 27 H 1.09003 * 117.49459 * 359.97438 * 26 23 22 28 28 C 1.52998 * 117.49836 * 214.98557 * 26 23 22 29 29 H 1.09001 * 109.47574 * 304.91656 * 1 2 3 30 30 H 1.09005 * 109.47516 * 64.91959 * 1 2 3 31 31 H 1.09000 * 109.47425 * 184.91645 * 1 2 3 32 32 H 1.08994 * 109.47592 * 240.00088 * 2 1 3 33 33 H 1.09005 * 109.47315 * 119.99553 * 2 1 3 34 34 H 1.09008 * 109.46700 * 180.98535 * 8 7 6 35 35 H 1.08996 * 109.47546 * 300.98780 * 8 7 6 36 36 H 0.97000 * 119.99939 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.47620 * 44.01051 * 17 7 6 38 38 H 1.09000 * 109.47109 * 284.01482 * 17 7 6 39 39 H 1.08997 * 109.46781 * 61.36355 * 18 17 7 40 40 H 1.08997 * 109.46694 * 301.36407 * 18 17 7 41 41 H 1.09000 * 109.47083 * 54.99884 * 19 18 17 42 42 H 1.09000 * 109.46718 * 179.97438 * 20 19 18 43 43 H 1.09000 * 109.47522 * 300.00053 * 20 19 18 44 44 H 1.09001 * 109.47051 * 60.00344 * 20 19 18 45 45 H 1.08997 * 109.47330 * 59.99516 * 21 19 18 46 46 H 1.09000 * 109.46807 * 180.02562 * 21 19 18 47 47 H 1.09001 * 109.47017 * 299.99498 * 21 19 18 48 48 H 1.09006 * 117.49634 * 0.02562 * 25 23 22 49 49 H 1.08998 * 117.49769 * 145.02331 * 25 23 22 50 50 H 1.08997 * 109.47311 * 60.00044 * 28 26 23 51 51 H 1.09008 * 109.46913 * 180.02562 * 28 26 23 52 52 H 1.09004 * 109.46807 * 299.99449 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2047 2.1789 -1.0456 5 7 2.6390 3.3339 -0.6858 6 6 2.7771 3.3717 0.6186 7 7 3.2249 4.4474 1.3687 8 6 4.5744 4.1981 1.8929 9 6 5.5312 4.0034 0.7449 10 1 5.1874 4.1265 -0.2715 11 6 6.8454 3.6682 0.9922 12 7 7.2643 3.5188 2.2298 13 14 8.0312 3.4261 -0.4308 14 1 7.3176 3.6510 -1.7135 15 1 9.1513 4.3939 -0.3118 16 1 8.5676 2.0418 -0.3982 17 6 3.1858 5.6888 0.5844 18 6 3.2954 6.8903 1.5253 19 6 3.2203 8.1838 0.7116 20 6 4.4386 8.2785 -0.2093 21 6 3.2045 9.3834 1.6612 22 7 2.3907 2.1538 1.0974 23 6 2.3656 1.7209 2.4967 24 1 3.0987 0.9609 2.7670 25 6 1.0060 1.6715 3.1967 26 6 2.0117 2.7687 3.5541 27 1 1.7981 3.7801 3.2084 28 6 2.7137 2.6691 4.9099 29 1 -0.3634 0.5882 0.8427 30 1 -0.3634 0.4356 -0.9308 31 1 -0.3634 -1.0239 0.0881 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.8946 5.0506 2.4921 35 1 4.5636 3.3018 2.5128 36 1 8.1891 3.2833 2.4038 37 1 2.2458 5.7421 0.0350 38 1 4.0186 5.7008 -0.1187 39 1 4.2462 6.8500 2.0567 40 1 2.4761 6.8650 2.2437 41 1 2.3104 8.1833 0.1115 42 1 4.3848 9.1998 -0.7892 43 1 5.3485 8.2790 0.3908 44 1 4.4499 7.4239 -0.8857 45 1 4.1144 9.3839 2.2613 46 1 3.1505 10.3049 1.0816 47 1 2.3366 9.3160 2.3173 48 1 0.1301 1.9607 2.6158 49 1 0.8447 0.8792 3.9276 50 1 3.7910 2.7550 4.7685 51 1 2.3666 3.4734 5.5586 52 1 2.4829 1.7076 5.3687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001764755352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:58 Heat of formation + Delta-G solvation = 86.422416 kcal Electronic energy + Delta-G solvation = -29284.307603 eV Core-core repulsion = 25706.523896 eV Total energy + Delta-G solvation = -3577.783707 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.25706 -37.83228 -37.59226 -35.42221 -33.75230 -32.59174 -32.25136 -29.04343 -28.38532 -28.02920 -26.84261 -26.26555 -24.07254 -23.13170 -23.04938 -22.08786 -20.67123 -19.75235 -19.38821 -19.17670 -17.04534 -16.52389 -15.62890 -15.54741 -14.99249 -14.76934 -14.39816 -14.19368 -14.06893 -13.72433 -13.55571 -13.30970 -12.89176 -12.81686 -12.75587 -12.38693 -12.15182 -12.06302 -11.91051 -11.68609 -11.43339 -11.33315 -11.23837 -11.15106 -10.99744 -10.84416 -10.77586 -10.67470 -10.54614 -10.39831 -10.29467 -10.16749 -10.00569 -9.93855 -9.73910 -9.44509 -9.28676 -8.62736 -8.51332 -7.34414 -6.13375 -4.19231 2.50498 2.85698 3.24744 3.33199 3.42572 3.63307 3.67114 4.38675 4.47672 4.68156 4.74239 4.82586 5.06117 5.14432 5.20775 5.24189 5.31220 5.35206 5.38322 5.46101 5.56315 5.67591 5.74873 5.79698 5.80531 5.87611 5.89123 5.93582 5.94783 6.01435 6.06456 6.09003 6.14899 6.17920 6.23811 6.30917 6.34461 6.40514 6.49255 6.52562 6.54539 6.60639 6.69950 6.90521 6.96927 7.07476 7.32743 7.37049 7.68466 7.83832 8.08865 8.21923 8.89909 9.48057 9.56220 10.93141 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.005649 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.840763 B = 4955.331852 C = 5956.469731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.025 4.025 3 C 0.157 3.843 4 N -0.290 5.290 5 N -0.337 5.337 6 C 0.414 3.586 7 N -0.466 5.466 8 C 0.195 3.805 9 C -0.547 4.547 10 H 0.068 0.932 11 C 0.069 3.931 12 N -0.892 5.892 13 Si 0.887 3.113 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.284 1.284 17 C 0.074 3.926 18 C -0.106 4.106 19 C -0.092 4.092 20 C -0.149 4.149 21 C -0.144 4.144 22 N -0.451 5.451 23 C 0.066 3.934 24 H 0.128 0.872 25 C -0.177 4.177 26 C -0.120 4.120 27 H 0.128 0.872 28 C -0.122 4.122 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.037 0.963 36 H 0.262 0.738 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.050 0.950 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.072 0.928 51 H 0.063 0.937 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -0.751 4.546 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C -0.111 4.111 4 N -0.130 5.130 5 N -0.181 5.181 6 C 0.058 3.942 7 N -0.190 5.190 8 C 0.071 3.929 9 C -0.586 4.586 10 H 0.086 0.914 11 C -0.133 4.133 12 N -0.530 5.530 13 Si 0.714 3.286 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.211 1.211 17 C -0.053 4.053 18 C -0.144 4.144 19 C -0.111 4.111 20 C -0.206 4.206 21 C -0.201 4.201 22 N -0.145 5.145 23 C -0.039 4.039 24 H 0.146 0.854 25 C -0.215 4.215 26 C -0.139 4.139 27 H 0.146 0.854 28 C -0.179 4.179 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.114 0.886 49 H 0.124 0.876 50 H 0.091 0.909 51 H 0.083 0.917 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.094 -0.260 3.619 12.627 hybrid contribution 1.501 -0.746 0.029 1.676 sum -10.594 -1.005 3.648 11.250 Atomic orbital electron populations 1.21725 0.94281 1.01621 1.02488 1.19774 0.95990 0.87135 1.03608 1.24372 1.06480 0.97522 0.82736 1.73812 1.16392 0.98682 1.24070 1.74611 1.22315 1.13887 1.07251 1.22541 0.97610 0.85375 0.88631 1.59388 1.28442 0.98824 1.32329 1.19947 0.79430 0.98198 0.95353 1.21812 0.95048 1.47970 0.93806 0.91411 1.24862 0.98156 0.94784 0.95522 1.69932 1.16715 1.47908 1.18490 0.86595 0.81003 0.77766 0.83212 1.19441 1.20801 1.21059 1.21964 1.01974 0.86420 0.94969 1.21591 1.02515 0.92469 0.97846 1.21036 0.98704 0.94679 0.96683 1.21883 0.97947 1.01215 0.99559 1.21818 1.01604 0.97451 0.99232 1.45389 1.50567 1.11891 1.06625 1.21834 1.00133 1.03664 0.78239 0.85428 1.23603 0.92878 1.02263 1.02745 1.22759 0.99525 0.96573 0.95006 0.85445 1.21382 1.01441 1.01426 0.93646 0.92856 0.92038 0.92011 0.89124 0.90606 0.93697 0.94464 0.92870 0.92124 0.91264 0.91052 0.92324 0.91748 0.93635 0.92467 0.91943 0.92686 0.93239 0.93079 0.88575 0.87634 0.90867 0.91748 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 37.15 0.37 -1.21 16 2 C -0.03 -0.34 6.35 -27.89 -0.18 -0.51 16 3 C 0.16 2.93 7.32 -154.01 -1.13 1.81 16 4 N -0.29 -6.46 12.18 32.99 0.40 -6.06 16 5 N -0.34 -8.00 11.16 30.31 0.34 -7.67 16 6 C 0.41 9.08 5.64 -318.88 -1.80 7.28 16 7 N -0.47 -9.73 3.11 -175.89 -0.55 -10.27 16 8 C 0.19 4.66 4.79 -4.98 -0.02 4.64 16 9 C -0.55 -14.89 7.63 -34.44 -0.26 -15.15 16 10 H 0.07 1.96 6.41 -52.48 -0.34 1.63 16 11 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 12 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 13 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 17 C 0.07 1.45 4.02 -3.83 -0.02 1.44 16 18 C -0.11 -1.75 4.71 -26.73 -0.13 -1.88 16 19 C -0.09 -1.31 2.92 -90.62 -0.26 -1.57 16 20 C -0.15 -2.23 8.95 37.16 0.33 -1.90 16 21 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 22 N -0.45 -8.61 3.12 -107.01 -0.33 -8.95 16 23 C 0.07 1.03 5.20 -67.93 -0.35 0.68 16 24 H 0.13 1.96 8.14 -51.93 -0.42 1.53 16 25 C -0.18 -2.09 10.11 -26.69 -0.27 -2.36 16 26 C -0.12 -1.69 5.13 -90.58 -0.46 -2.15 16 27 H 0.13 2.05 6.96 -51.93 -0.36 1.69 16 28 C -0.12 -1.51 10.19 37.16 0.38 -1.13 16 29 H 0.05 0.60 7.75 -51.93 -0.40 0.19 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 34 H 0.05 1.12 6.63 -51.92 -0.34 0.78 16 35 H 0.04 0.95 6.97 -51.93 -0.36 0.59 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.06 1.18 7.77 -51.93 -0.40 0.78 16 38 H 0.07 1.55 4.79 -51.93 -0.25 1.30 16 39 H 0.07 1.30 6.77 -51.93 -0.35 0.95 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.04 6.60 -51.93 -0.34 0.69 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.10 1.17 7.75 -51.93 -0.40 0.77 16 49 H 0.11 0.98 8.05 -51.93 -0.42 0.56 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 51 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 52 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 LS Contribution 407.56 15.07 6.14 6.14 Total: -1.00 -31.12 407.56 -11.27 -42.39 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -9.42 Total: 3.45 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -3.56 Total: -11.60 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.60 Total: -57.42 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.12 -11.27 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001764755352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.810 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds