Wall clock time and date at job start Tue Mar 31 2020 13:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47119 * 2 1 4 4 N 1.30295 * 126.34716 * 274.92492 * 3 2 1 5 5 N 1.28532 * 110.05525 * 179.69055 * 4 3 2 6 6 C 1.31218 * 109.85936 * 0.44945 * 5 4 3 7 7 N 1.38578 * 126.47264 * 179.82456 * 6 5 4 8 8 C 1.46904 * 110.99602 * 251.88210 * 7 6 5 9 9 C 1.50695 * 109.47062 * 60.99080 * 8 7 6 10 10 H 1.08007 * 120.00498 * 4.21579 * 9 8 7 11 11 C 1.37872 * 120.00094 * 184.21594 * 9 8 7 12 12 N 1.31510 * 119.99967 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 120.00027 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47030 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.46871 * 120.00064 * 13 11 9 16 16 H 1.48499 * 109.47101 * 239.99993 * 13 11 9 17 17 C 1.46891 * 111.00123 * 15.83961 * 7 6 5 18 18 C 1.53000 * 109.47548 * 164.01491 * 17 7 6 19 19 C 1.52999 * 109.47297 * 181.36646 * 18 17 7 20 20 C 1.53003 * 109.46886 * 294.99563 * 19 18 17 21 21 C 1.53005 * 109.46781 * 175.00092 * 19 18 17 22 22 N 1.36454 * 107.05468 * 359.56074 * 6 5 4 23 23 C 1.46496 * 127.14150 * 180.24237 * 22 6 5 24 24 H 1.08994 * 115.55067 * 248.93692 * 23 22 6 25 25 C 1.52998 * 117.50168 * 103.25775 * 23 22 6 26 26 C 1.53004 * 117.49777 * 34.59885 * 23 22 6 27 27 H 1.09003 * 117.49459 * 359.97438 * 26 23 22 28 28 C 1.52998 * 117.49836 * 214.98557 * 26 23 22 29 29 H 1.09001 * 109.47574 * 304.91656 * 1 2 3 30 30 H 1.09005 * 109.47516 * 64.91959 * 1 2 3 31 31 H 1.09000 * 109.47425 * 184.91645 * 1 2 3 32 32 H 1.08994 * 109.47592 * 240.00088 * 2 1 3 33 33 H 1.09005 * 109.47315 * 119.99553 * 2 1 3 34 34 H 1.09008 * 109.46700 * 180.98535 * 8 7 6 35 35 H 1.08996 * 109.47546 * 300.98780 * 8 7 6 36 36 H 0.97000 * 119.99939 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.47620 * 44.01051 * 17 7 6 38 38 H 1.09000 * 109.47109 * 284.01482 * 17 7 6 39 39 H 1.08997 * 109.46781 * 61.36355 * 18 17 7 40 40 H 1.08997 * 109.46694 * 301.36407 * 18 17 7 41 41 H 1.09000 * 109.47083 * 54.99884 * 19 18 17 42 42 H 1.09000 * 109.46718 * 179.97438 * 20 19 18 43 43 H 1.09000 * 109.47522 * 300.00053 * 20 19 18 44 44 H 1.09001 * 109.47051 * 60.00344 * 20 19 18 45 45 H 1.08997 * 109.47330 * 59.99516 * 21 19 18 46 46 H 1.09000 * 109.46807 * 180.02562 * 21 19 18 47 47 H 1.09001 * 109.47017 * 299.99498 * 21 19 18 48 48 H 1.09006 * 117.49634 * 0.02562 * 25 23 22 49 49 H 1.08998 * 117.49769 * 145.02331 * 25 23 22 50 50 H 1.08997 * 109.47311 * 60.00044 * 28 26 23 51 51 H 1.09008 * 109.46913 * 180.02562 * 28 26 23 52 52 H 1.09004 * 109.46807 * 299.99449 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2047 2.1789 -1.0456 5 7 2.6390 3.3339 -0.6858 6 6 2.7771 3.3717 0.6186 7 7 3.2249 4.4474 1.3687 8 6 4.5744 4.1981 1.8929 9 6 5.5312 4.0034 0.7449 10 1 5.1874 4.1265 -0.2715 11 6 6.8454 3.6682 0.9922 12 7 7.2643 3.5188 2.2298 13 14 8.0312 3.4261 -0.4308 14 1 7.3176 3.6510 -1.7135 15 1 9.1513 4.3939 -0.3118 16 1 8.5676 2.0418 -0.3982 17 6 3.1858 5.6888 0.5844 18 6 3.2954 6.8903 1.5253 19 6 3.2203 8.1838 0.7116 20 6 4.4386 8.2785 -0.2093 21 6 3.2045 9.3834 1.6612 22 7 2.3907 2.1538 1.0974 23 6 2.3656 1.7209 2.4967 24 1 3.0987 0.9609 2.7670 25 6 1.0060 1.6715 3.1967 26 6 2.0117 2.7687 3.5541 27 1 1.7981 3.7801 3.2084 28 6 2.7137 2.6691 4.9099 29 1 -0.3634 0.5882 0.8427 30 1 -0.3634 0.4356 -0.9308 31 1 -0.3634 -1.0239 0.0881 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.8946 5.0506 2.4921 35 1 4.5636 3.3018 2.5128 36 1 8.1891 3.2833 2.4038 37 1 2.2458 5.7421 0.0350 38 1 4.0186 5.7008 -0.1187 39 1 4.2462 6.8500 2.0567 40 1 2.4761 6.8650 2.2437 41 1 2.3104 8.1833 0.1115 42 1 4.3848 9.1998 -0.7892 43 1 5.3485 8.2790 0.3908 44 1 4.4499 7.4239 -0.8857 45 1 4.1144 9.3839 2.2613 46 1 3.1505 10.3049 1.0816 47 1 2.3366 9.3160 2.3173 48 1 0.1301 1.9607 2.6158 49 1 0.8447 0.8792 3.9276 50 1 3.7910 2.7550 4.7685 51 1 2.3666 3.4734 5.5586 52 1 2.4829 1.7076 5.3687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001764755352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:57 Heat of formation + Delta-G solvation = 72.260899 kcal Electronic energy + Delta-G solvation = -29284.921692 eV Core-core repulsion = 25706.523896 eV Total energy + Delta-G solvation = -3578.397796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 320.227 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.82776 -39.30823 -38.90176 -36.79774 -35.04575 -34.58848 -33.66283 -30.44362 -30.08692 -29.16897 -28.09648 -27.93452 -25.59054 -24.55298 -24.44886 -23.58636 -21.89571 -21.09206 -20.77498 -20.62152 -18.72569 -18.30924 -17.22983 -17.17996 -16.63468 -16.25428 -15.77537 -15.49013 -15.23802 -15.03008 -14.91560 -14.49034 -14.44548 -14.24744 -13.99160 -13.84301 -13.39582 -13.22881 -13.14790 -13.10443 -13.00059 -12.68302 -12.62764 -12.55238 -12.43761 -12.29214 -12.24779 -12.18722 -12.03745 -11.97259 -11.77156 -11.53783 -11.52219 -11.37345 -11.33334 -10.85952 -10.66940 -10.65184 -10.33080 -9.10047 -8.27654 -6.39914 0.96054 1.22944 1.26603 1.39193 1.44741 1.97978 2.29468 2.55135 2.98891 3.02904 3.40631 3.64122 3.69290 3.93403 3.97132 4.07882 4.09539 4.11808 4.26361 4.38032 4.40319 4.43645 4.57906 4.59253 4.66672 4.75064 4.78245 4.82377 4.84684 4.87232 4.90853 4.97880 5.00549 5.03161 5.04767 5.12418 5.16343 5.20234 5.21821 5.23977 5.26502 5.28171 5.35491 5.38695 5.43777 5.52543 5.57245 5.66600 5.78581 5.94436 6.05760 6.52770 6.74685 7.29111 7.93261 8.76606 Molecular weight = 320.23amu Principal moments of inertia in cm(-1) A = 0.008656 B = 0.005649 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.840763 B = 4955.331852 C = 5956.469731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.027 4.027 3 C 0.172 3.828 4 N -0.335 5.335 5 N -0.373 5.373 6 C 0.391 3.609 7 N -0.450 5.450 8 C 0.219 3.781 9 C -0.553 4.553 10 H 0.043 0.957 11 C 0.030 3.970 12 N -0.911 5.911 13 Si 0.936 3.064 14 H -0.285 1.285 15 H -0.268 1.268 16 H -0.278 1.278 17 C 0.081 3.919 18 C -0.095 4.095 19 C -0.088 4.088 20 C -0.147 4.147 21 C -0.138 4.138 22 N -0.450 5.450 23 C 0.031 3.969 24 H 0.129 0.871 25 C -0.131 4.131 26 C -0.129 4.129 27 H 0.104 0.896 28 C -0.114 4.114 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.023 0.977 36 H 0.266 0.734 37 H 0.059 0.941 38 H 0.036 0.964 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.049 0.951 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.145 0.855 50 H 0.041 0.959 51 H 0.076 0.924 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 -1.703 5.985 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.066 4.066 3 C -0.097 4.097 4 N -0.174 5.174 5 N -0.217 5.217 6 C 0.034 3.966 7 N -0.174 5.174 8 C 0.094 3.906 9 C -0.592 4.592 10 H 0.062 0.938 11 C -0.171 4.171 12 N -0.551 5.551 13 Si 0.763 3.237 14 H -0.211 1.211 15 H -0.193 1.193 16 H -0.204 1.204 17 C -0.046 4.046 18 C -0.133 4.133 19 C -0.107 4.107 20 C -0.204 4.204 21 C -0.195 4.195 22 N -0.143 5.143 23 C -0.073 4.073 24 H 0.147 0.853 25 C -0.168 4.168 26 C -0.148 4.148 27 H 0.122 0.878 28 C -0.171 4.171 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.051 0.949 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.115 0.885 49 H 0.163 0.837 50 H 0.060 0.940 51 H 0.095 0.905 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -13.729 -1.216 5.069 14.685 hybrid contribution 1.961 -0.520 -0.449 2.078 sum -11.767 -1.736 4.620 12.760 Atomic orbital electron populations 1.21675 0.92002 1.03728 1.01805 1.20113 0.97778 0.83740 1.05013 1.25456 1.03503 0.98864 0.81832 1.73722 1.18824 0.98950 1.25862 1.74479 1.23312 1.15281 1.08614 1.22676 0.98657 0.86691 0.88590 1.59406 1.26410 0.99143 1.32410 1.19497 0.80461 0.96732 0.93898 1.21899 0.95951 1.47814 0.93567 0.93835 1.25436 0.99385 0.94824 0.97419 1.69985 1.17239 1.48399 1.19428 0.85836 0.79567 0.78184 0.80139 1.21058 1.19273 1.20378 1.21929 1.00379 0.87246 0.95080 1.21519 1.01830 0.92377 0.97546 1.21036 0.98550 0.94350 0.96813 1.21860 0.97934 1.01263 0.99367 1.21765 1.01963 0.96823 0.98960 1.45659 1.49497 1.10845 1.08269 1.22208 1.03414 1.04933 0.76712 0.85303 1.23690 0.90590 1.01339 1.01229 1.22754 1.01095 0.95792 0.95131 0.87836 1.21336 0.99185 1.03520 0.93098 0.92800 0.93401 0.88530 0.88516 0.88325 0.94933 0.95890 0.92455 0.92269 0.94555 0.93124 0.90878 0.90876 0.91232 0.93669 0.94541 0.93163 0.91444 0.91832 0.88529 0.83739 0.93961 0.90510 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.89 71.98 0.71 -1.86 16 2 C -0.03 -0.66 6.35 29.85 0.19 -0.47 16 3 C 0.17 6.44 7.32 137.64 1.01 7.45 16 4 N -0.33 -15.37 12.18 -49.53 -0.60 -15.97 16 5 N -0.37 -18.61 11.16 -58.01 -0.65 -19.26 16 6 C 0.39 17.83 5.64 260.11 1.47 19.29 16 7 N -0.45 -19.70 3.11 -710.38 -2.21 -21.91 16 8 C 0.22 11.00 4.79 85.55 0.41 11.41 16 9 C -0.55 -31.44 7.63 25.60 0.20 -31.25 16 10 H 0.04 2.67 6.41 -2.91 -0.02 2.65 16 11 C 0.03 1.71 5.46 84.65 0.46 2.17 16 12 N -0.91 -52.32 13.29 21.44 0.28 -52.04 16 13 Si 0.94 46.30 29.54 68.60 2.03 48.32 16 14 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 17 C 0.08 3.36 4.02 86.31 0.35 3.71 16 18 C -0.09 -3.22 4.71 30.59 0.14 -3.08 16 19 C -0.09 -2.50 2.92 -10.79 -0.03 -2.53 16 20 C -0.15 -4.51 8.95 71.98 0.64 -3.86 16 21 C -0.14 -3.12 9.19 71.98 0.66 -2.46 16 22 N -0.45 -17.31 3.12 -492.47 -1.54 -18.85 16 23 C 0.03 0.93 5.20 44.99 0.23 1.16 16 24 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 25 C -0.13 -2.67 10.11 30.62 0.31 -2.37 16 26 C -0.13 -3.48 5.13 -10.77 -0.06 -3.54 16 27 H 0.10 3.33 6.96 -2.39 -0.02 3.32 16 28 C -0.11 -2.67 10.19 71.98 0.73 -1.94 16 29 H 0.05 1.04 7.75 -2.39 -0.02 1.02 16 30 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.10 2.02 7.86 -2.38 -0.02 2.00 16 34 H 0.03 1.71 6.63 -2.38 -0.02 1.70 16 35 H 0.02 1.22 6.97 -2.39 -0.02 1.20 16 36 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.06 2.44 7.77 -2.39 -0.02 2.42 16 38 H 0.04 1.75 4.79 -2.39 -0.01 1.74 16 39 H 0.05 1.93 6.77 -2.39 -0.02 1.91 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.04 1.28 6.60 -2.39 -0.02 1.27 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.10 2.04 7.75 -2.38 -0.02 2.02 16 49 H 0.14 1.89 8.05 -2.39 -0.02 1.87 16 50 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 52 H 0.08 1.43 7.90 -2.39 -0.02 1.41 16 Total: -1.00 -71.61 407.56 5.62 -65.99 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.87 Total: 21.87 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 7.43 Total: -8.15 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.71 Total: -128.03 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -71.61 5.62 -65.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001764755352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.252 kcal (2) G-P(sol) polarization free energy of solvation -71.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds