Wall clock time and date at job start Tue Mar 31 2020 12:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 120.00323 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00265 * 3 2 1 5 5 H 1.48497 * 109.46827 * 29.99928 * 3 2 1 6 6 H 1.48495 * 109.47271 * 150.00104 * 3 2 1 7 7 C 1.38800 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00095 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99815 * 179.97438 * 7 2 1 10 10 C 1.81003 * 100.00006 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47123 * 180.02562 * 10 9 7 12 12 O 1.21298 * 119.99816 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99864 * 179.97438 * 11 10 9 14 14 C 1.40230 * 119.99856 * 185.52877 * 13 11 10 15 15 C 1.38701 * 120.06374 * 24.80894 * 14 13 11 16 16 C 1.38192 * 120.01029 * 179.97438 * 15 14 13 17 17 C 1.38480 * 120.13644 * 0.02562 * 16 15 14 18 18 F 1.35102 * 119.93771 * 180.02562 * 17 16 15 19 19 C 1.38434 * 120.12917 * 359.76680 * 17 16 15 20 20 C 1.38548 * 119.98653 * 0.48643 * 19 17 16 21 21 O 1.35973 * 120.06427 * 179.76503 * 20 19 17 22 22 C 1.42894 * 117.00230 * 359.73133 * 21 20 19 23 23 F 1.39898 * 109.47446 * 59.99818 * 22 21 20 24 24 F 1.39902 * 109.46923 * 299.99650 * 22 21 20 25 25 H 0.97002 * 119.99668 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47208 * 60.00180 * 10 9 7 27 27 H 1.08998 * 109.46737 * 299.99936 * 10 9 7 28 28 H 0.97002 * 120.00063 * 5.53306 * 13 11 10 29 29 H 1.08006 * 119.99471 * 359.97438 * 15 14 13 30 30 H 1.07999 * 119.93570 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.00402 * 180.28229 * 19 17 16 32 32 H 1.08998 * 109.47220 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7000 6 1 3.5480 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9847 -0.0025 11 6 5.5731 -3.2327 -0.0026 12 8 6.3441 -2.2963 -0.0024 13 7 6.0456 -4.4949 -0.0030 14 6 7.4235 -4.7277 0.1139 15 6 8.2378 -3.7863 0.7259 16 6 9.5954 -4.0171 0.8410 17 6 10.1462 -5.1872 0.3457 18 9 11.4739 -5.4089 0.4609 19 6 9.3382 -6.1325 -0.2624 20 6 7.9772 -5.9042 -0.3853 21 8 7.1828 -6.8295 -0.9866 22 6 7.8192 -8.0123 -1.4742 23 9 8.4374 -8.6809 -0.4121 24 9 8.7805 -7.6647 -2.4293 25 1 -0.4850 0.8401 0.0004 26 1 3.6434 -3.4311 -0.8926 27 1 3.6440 -3.4322 0.8873 28 1 5.4326 -5.2422 -0.0843 29 1 7.8107 -2.8728 1.1127 30 1 10.2283 -3.2835 1.3182 31 1 9.7692 -7.0463 -0.6439 32 1 7.0739 -8.6647 -1.9291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172727437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:38 Heat of formation + Delta-G solvation = -192.648224 kcal Electronic energy + Delta-G solvation = -23864.877422 eV Core-core repulsion = 19502.544643 eV Total energy + Delta-G solvation = -4362.332778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.043 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.80048 -49.08645 -47.78200 -40.94705 -39.33059 -37.45188 -34.73154 -32.50402 -30.97644 -30.54492 -28.36972 -26.55146 -25.68275 -23.60416 -22.80701 -20.71837 -19.64191 -19.05399 -18.36745 -18.03510 -17.50430 -17.20713 -16.78524 -16.07267 -15.76433 -15.66735 -15.26518 -15.05622 -14.86935 -14.41744 -14.35793 -14.09616 -14.05517 -13.91138 -13.68364 -13.25380 -13.02585 -12.85515 -12.66593 -12.54174 -12.00695 -11.59504 -11.33657 -11.06467 -10.72869 -10.51434 -9.92983 -9.71383 -9.10435 -9.06599 -8.61371 -8.09652 -7.01361 -6.35155 -4.08526 0.78838 0.86232 2.01986 2.53647 2.60399 2.99476 3.09829 3.28549 3.32818 3.44661 3.50839 3.78304 4.01936 4.17016 4.26663 4.37273 4.51440 4.61675 4.71573 4.98402 5.03948 5.18500 5.38022 5.57785 5.60401 5.73667 5.87092 6.01042 6.17046 6.21500 6.72670 7.24981 7.87693 8.11581 8.35361 9.10504 10.73988 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.002933 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.563364 B = 9544.883740 C =10501.631935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.097 3.903 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.524 4.524 8 H 0.089 0.911 9 S -0.136 6.136 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.497 6.497 13 N -0.668 5.668 14 C 0.144 3.856 15 C -0.075 4.075 16 C -0.149 4.149 17 C 0.110 3.890 18 F -0.136 7.136 19 C -0.207 4.207 20 C 0.097 3.903 21 O -0.317 6.317 22 C 0.413 3.587 23 F -0.198 7.198 24 F -0.196 7.196 25 H 0.272 0.728 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.416 0.584 29 H 0.170 0.830 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.017 -17.571 -0.916 24.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.090 5.910 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.370 6.370 13 N -0.313 5.313 14 C 0.048 3.952 15 C -0.095 4.095 16 C -0.168 4.168 17 C 0.089 3.911 18 F -0.115 7.115 19 C -0.227 4.227 20 C 0.051 3.949 21 O -0.234 6.234 22 C 0.323 3.677 23 F -0.179 7.179 24 F -0.178 7.178 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.253 0.747 29 H 0.187 0.813 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 17.915 -15.886 -0.932 23.961 hybrid contribution -0.555 -1.003 -0.168 1.158 sum 17.359 -16.888 -1.099 24.244 Atomic orbital electron populations 1.69936 1.05924 1.27870 1.47744 1.24711 0.94456 0.98984 0.93091 0.86740 0.81860 0.83287 0.79986 1.19155 1.19857 1.15918 1.22290 0.88030 0.97627 1.59174 0.89251 1.84807 1.09638 0.99116 1.97470 1.23289 0.92616 1.05198 1.06419 1.20556 0.91235 0.81490 0.74675 1.90668 1.58301 1.42037 1.46022 1.43537 1.04994 1.09625 1.73181 1.17150 0.84879 0.93031 1.00154 1.21310 0.92049 0.99922 0.96230 1.21113 0.95821 0.96850 1.03035 1.17267 0.77625 0.95113 1.01050 1.91504 1.30912 1.94902 1.94159 1.21174 0.92083 1.02406 1.06991 1.18114 0.88900 0.90136 0.97762 1.86594 1.36452 1.28240 1.72154 1.23400 0.84602 0.83053 0.76644 1.93108 1.85150 1.80579 1.59107 1.93117 1.67617 1.92492 1.64596 0.91844 0.87945 0.87776 0.74717 0.81289 0.83766 0.83530 0.79823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.97 55.49 0.78 -25.12 16 2 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.12 27.74 -169.99 -4.71 16.40 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.24 -5.74 6.74 56.52 0.38 -5.36 16 7 C -0.52 -14.52 10.04 30.94 0.31 -14.21 16 8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 9 S -0.14 -3.27 18.55 -107.50 -1.99 -5.26 16 10 C -0.12 -2.21 6.16 36.01 0.22 -1.98 16 11 C 0.53 8.64 7.66 -10.99 -0.08 8.55 16 12 O -0.50 -9.54 13.03 5.54 0.07 -9.47 16 13 N -0.67 -8.40 5.29 -9.73 -0.05 -8.45 16 14 C 0.14 1.84 6.45 -83.46 -0.54 1.30 16 15 C -0.07 -0.97 8.72 -39.43 -0.34 -1.32 16 16 C -0.15 -1.69 10.02 -39.51 -0.40 -2.09 16 17 C 0.11 1.28 7.30 -39.42 -0.29 1.00 16 18 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 19 C -0.21 -2.33 8.23 -39.40 -0.32 -2.66 16 20 C 0.10 1.10 6.50 -39.08 -0.25 0.85 16 21 O -0.32 -2.89 9.84 -19.66 -0.19 -3.09 16 22 C 0.41 2.63 5.98 101.05 0.60 3.23 16 23 F -0.20 -1.55 15.57 2.25 0.04 -1.51 16 24 F -0.20 -1.65 15.60 2.25 0.04 -1.61 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 27 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 28 H 0.42 4.06 8.35 -40.82 -0.34 3.72 16 29 H 0.17 2.42 5.79 -52.48 -0.30 2.12 16 30 H 0.14 1.35 8.06 -52.49 -0.42 0.92 16 31 H 0.15 1.52 5.10 -52.49 -0.27 1.25 16 32 H 0.19 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 308.40 15.07 4.65 4.65 Total: -1.00 -32.97 308.40 -4.72 -37.68 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -2.18 Total: 2.01 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.19 Total: -4.67 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.72 Total: -33.57 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.12 Total: -12.55 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.11 Total: -4.70 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.40 kcal Atomic # 16 Polarization: -3.27 SS G_CDS: -1.99 Total: -5.26 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.97 -4.72 -37.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172727437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.965 kcal (2) G-P(sol) polarization free energy of solvation -32.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds