Wall clock time and date at job start Tue Mar 31 2020 12:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86799 * 120.00323 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00265 * 3 2 1 5 5 H 1.48497 * 109.46827 * 29.99928 * 3 2 1 6 6 H 1.48495 * 109.47271 * 150.00104 * 3 2 1 7 7 C 1.38800 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00095 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99815 * 179.97438 * 7 2 1 10 10 C 1.81003 * 100.00006 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47123 * 180.02562 * 10 9 7 12 12 O 1.21298 * 119.99816 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99864 * 179.97438 * 11 10 9 14 14 C 1.40230 * 119.99856 * 185.52877 * 13 11 10 15 15 C 1.38701 * 120.06374 * 24.80894 * 14 13 11 16 16 C 1.38192 * 120.01029 * 179.97438 * 15 14 13 17 17 C 1.38480 * 120.13644 * 0.02562 * 16 15 14 18 18 F 1.35102 * 119.93771 * 180.02562 * 17 16 15 19 19 C 1.38434 * 120.12917 * 359.76680 * 17 16 15 20 20 C 1.38548 * 119.98653 * 0.48643 * 19 17 16 21 21 O 1.35973 * 120.06427 * 179.76503 * 20 19 17 22 22 C 1.42894 * 117.00230 * 359.73133 * 21 20 19 23 23 F 1.39898 * 109.47446 * 59.99818 * 22 21 20 24 24 F 1.39902 * 109.46923 * 299.99650 * 22 21 20 25 25 H 0.97002 * 119.99668 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47208 * 60.00180 * 10 9 7 27 27 H 1.08998 * 109.46737 * 299.99936 * 10 9 7 28 28 H 0.97002 * 120.00063 * 5.53306 * 13 11 10 29 29 H 1.08006 * 119.99471 * 359.97438 * 15 14 13 30 30 H 1.07999 * 119.93570 * 180.02562 * 16 15 14 31 31 H 1.07998 * 120.00402 * 180.28229 * 19 17 16 32 32 H 1.08998 * 109.47220 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7000 6 1 3.5480 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0866 -2.9847 -0.0025 11 6 5.5731 -3.2327 -0.0026 12 8 6.3441 -2.2963 -0.0024 13 7 6.0456 -4.4949 -0.0030 14 6 7.4235 -4.7277 0.1139 15 6 8.2378 -3.7863 0.7259 16 6 9.5954 -4.0171 0.8410 17 6 10.1462 -5.1872 0.3457 18 9 11.4739 -5.4089 0.4609 19 6 9.3382 -6.1325 -0.2624 20 6 7.9772 -5.9042 -0.3853 21 8 7.1828 -6.8295 -0.9866 22 6 7.8192 -8.0123 -1.4742 23 9 8.4374 -8.6809 -0.4121 24 9 8.7805 -7.6647 -2.4293 25 1 -0.4850 0.8401 0.0004 26 1 3.6434 -3.4311 -0.8926 27 1 3.6440 -3.4322 0.8873 28 1 5.4326 -5.2422 -0.0843 29 1 7.8107 -2.8728 1.1127 30 1 10.2283 -3.2835 1.3182 31 1 9.7692 -7.0463 -0.6439 32 1 7.0739 -8.6647 -1.9291 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172727437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:37 Heat of formation + Delta-G solvation = -214.765323 kcal Electronic energy + Delta-G solvation = -23865.836491 eV Core-core repulsion = 19502.544643 eV Total energy + Delta-G solvation = -4363.291848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.043 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.36452 -50.01569 -48.35163 -41.95958 -40.36484 -38.33446 -35.87375 -34.65873 -32.03277 -31.61340 -29.49653 -27.84100 -27.17292 -24.55018 -23.69429 -21.91566 -20.44840 -20.02134 -19.60141 -18.94115 -18.54168 -18.22217 -17.81625 -17.11486 -17.08225 -16.73198 -16.49113 -16.43927 -15.92729 -15.62131 -15.24639 -15.02012 -14.93444 -14.90922 -14.77450 -14.68384 -14.22064 -13.82811 -13.73668 -13.33912 -13.32993 -13.08886 -12.97983 -12.66717 -12.43215 -11.86666 -11.59340 -11.15878 -11.01081 -10.54321 -10.01642 -9.10402 -8.96364 -8.50412 -6.21318 -0.18294 -0.04176 0.94130 1.33321 1.37158 1.38125 1.46250 1.53578 1.98750 2.25727 2.37320 2.48085 2.68247 2.88333 3.03926 3.42831 3.54765 3.59150 3.64824 3.77696 3.89888 4.16785 4.21844 4.40400 4.47441 4.66875 4.85897 5.05604 5.19528 5.31260 5.71947 5.79721 6.13618 6.20524 6.92264 6.95038 8.61891 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.002933 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.563364 B = 9544.883740 C =10501.631935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.262 1.262 6 H -0.233 1.233 7 C -0.529 4.529 8 H 0.065 0.935 9 S -0.167 6.167 10 C -0.111 4.111 11 C 0.540 3.460 12 O -0.531 6.531 13 N -0.647 5.647 14 C 0.125 3.875 15 C -0.084 4.084 16 C -0.147 4.147 17 C 0.107 3.893 18 F -0.137 7.137 19 C -0.209 4.209 20 C 0.107 3.893 21 O -0.319 6.319 22 C 0.406 3.594 23 F -0.206 7.206 24 F -0.209 7.209 25 H 0.277 0.723 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.431 0.569 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.221 -18.880 -1.250 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.157 1.157 7 C -0.677 4.677 8 H 0.083 0.917 9 S 0.060 5.940 10 C -0.262 4.262 11 C 0.327 3.673 12 O -0.407 6.407 13 N -0.294 5.294 14 C 0.029 3.971 15 C -0.104 4.104 16 C -0.167 4.167 17 C 0.087 3.913 18 F -0.115 7.115 19 C -0.229 4.229 20 C 0.060 3.940 21 O -0.236 6.236 22 C 0.318 3.682 23 F -0.188 7.188 24 F -0.191 7.191 25 H 0.086 0.914 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.270 0.730 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 19.124 -17.249 -1.266 25.785 hybrid contribution -0.849 -0.827 -0.082 1.189 sum 18.275 -18.077 -1.348 25.740 Atomic orbital electron populations 1.70019 1.07363 1.29016 1.49150 1.25554 0.95233 1.02260 0.92922 0.85886 0.80792 0.79653 0.80176 1.18801 1.18594 1.15725 1.22468 0.90261 0.96740 1.58210 0.91714 1.84699 1.06433 1.05287 1.97615 1.23247 0.94293 1.00367 1.08266 1.20165 0.90156 0.82281 0.74663 1.90671 1.58689 1.43334 1.47984 1.43176 1.05494 1.08749 1.71967 1.17229 0.84591 0.93900 1.01398 1.21231 0.92771 0.99627 0.96801 1.21235 0.95437 0.97203 1.02799 1.17378 0.77644 0.95291 1.00971 1.91504 1.30986 1.94904 1.94156 1.21318 0.92105 1.02662 1.06811 1.18051 0.88981 0.90035 0.96901 1.86613 1.36593 1.28692 1.71714 1.24371 0.85333 0.82425 0.76085 1.93092 1.85484 1.80524 1.59709 1.93093 1.68397 1.92595 1.64970 0.91397 0.86147 0.85953 0.72970 0.82791 0.82035 0.82641 0.74381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.70 13.97 21.65 0.30 -54.40 16 2 C 0.05 2.61 5.50 84.86 0.47 3.08 16 3 Si 0.91 43.60 27.74 68.60 1.90 45.50 16 4 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.23 -11.00 6.74 99.48 0.67 -10.33 16 7 C -0.53 -29.56 10.04 67.95 0.68 -28.88 16 8 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 9 S -0.17 -7.90 18.55 -56.49 -1.05 -8.95 16 10 C -0.11 -3.77 6.16 71.24 0.44 -3.33 16 11 C 0.54 16.80 7.66 87.66 0.67 17.48 16 12 O -0.53 -20.09 13.03 -3.09 -0.04 -20.13 16 13 N -0.65 -15.10 5.29 -303.08 -1.60 -16.71 16 14 C 0.12 3.00 6.45 38.16 0.25 3.25 16 15 C -0.08 -2.12 8.72 22.37 0.20 -1.92 16 16 C -0.15 -3.19 10.02 22.32 0.22 -2.97 16 17 C 0.11 2.35 7.30 22.37 0.16 2.51 16 18 F -0.14 -3.04 17.26 44.97 0.78 -2.26 16 19 C -0.21 -4.34 8.23 22.39 0.18 -4.16 16 20 C 0.11 2.22 6.50 22.59 0.15 2.36 16 21 O -0.32 -4.93 9.84 -93.25 -0.92 -5.84 16 22 C 0.41 3.90 5.98 113.37 0.68 4.58 16 23 F -0.21 -2.70 15.57 44.97 0.70 -2.00 16 24 F -0.21 -2.99 15.60 44.97 0.70 -2.29 16 25 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.12 3.69 8.14 -2.40 -0.02 3.67 16 27 H 0.12 3.74 8.14 -2.40 -0.02 3.72 16 28 H 0.43 7.32 8.35 -92.71 -0.77 6.55 16 29 H 0.15 4.41 5.79 -2.91 -0.02 4.39 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 31 H 0.16 2.92 5.10 -2.91 -0.01 2.90 16 32 H 0.24 -0.42 8.14 -2.39 -0.02 -0.44 16 Total: -1.00 -71.52 308.40 5.27 -66.25 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.40 Total: 8.83 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 4.10 Total: -8.00 kcal Atomic # 7 Polarization: -69.80 SS G_CDS: -1.30 Total: -71.10 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.96 Total: -25.97 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 2.18 Total: -6.56 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.90 Total: 45.50 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.05 Total: -8.95 kcal Total: -71.52 5.27 -66.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172727437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.514 kcal (2) G-P(sol) polarization free energy of solvation -71.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds