Wall clock time and date at job start Tue Mar 31 2020 12:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45189 * 1 3 3 C 1.34778 * 117.00135 * 2 1 4 4 O 1.21536 * 120.00351 * 359.97438 * 3 2 1 5 5 C 1.47240 * 120.00087 * 180.02562 * 3 2 1 6 6 C 1.39901 * 120.09178 * 359.97438 * 5 3 2 7 7 C 1.36543 * 120.10577 * 180.02562 * 6 5 3 8 8 C 1.39240 * 120.29639 * 0.25492 * 7 6 5 9 9 N 1.39179 * 119.90827 * 179.74488 * 8 7 6 10 10 S 1.65602 * 119.99924 * 327.21689 * 9 8 7 11 11 O 1.42097 * 106.40044 * 181.32663 * 10 9 8 12 12 O 1.42102 * 106.39956 * 314.24605 * 10 9 8 13 13 C 1.76199 * 107.21714 * 67.78934 * 10 9 8 14 14 H 1.07996 * 120.00168 * 359.97438 * 13 10 9 15 15 C 1.37878 * 119.99580 * 180.02562 * 13 10 9 16 16 N 1.31506 * 120.00384 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99615 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47427 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47096 * 119.99970 * 17 15 13 20 20 H 1.48497 * 109.47217 * 239.99590 * 17 15 13 21 21 C 1.39243 * 120.18219 * 359.48715 * 8 7 6 22 22 F 1.35108 * 120.05359 * 180.25263 * 21 8 7 23 23 C 1.38129 * 119.89011 * 0.51287 * 21 8 7 24 24 F 1.35102 * 120.14531 * 179.76721 * 23 21 8 25 25 H 1.09000 * 109.47277 * 300.00648 * 1 2 3 26 26 H 1.09001 * 109.47170 * 60.00650 * 1 2 3 27 27 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 28 28 H 1.08006 * 119.94471 * 0.02562 * 6 5 3 29 29 H 1.07995 * 119.85051 * 179.97438 * 7 6 5 30 30 H 0.97006 * 119.99909 * 147.21787 * 9 8 7 31 31 H 0.97006 * 120.00398 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2202 -0.0005 5 6 3.5342 1.2779 -0.0006 6 6 4.2980 0.1058 -0.0006 7 6 5.6616 0.1769 -0.0006 8 6 6.3004 1.4141 0.0048 9 7 7.6908 1.4772 0.0101 10 16 8.5697 0.3083 0.7871 11 8 9.9361 0.6688 0.6388 12 8 7.9499 0.1140 2.0510 13 6 8.3506 -1.1920 -0.1105 14 1 7.7275 -1.2076 -0.9924 15 6 8.9740 -2.3463 0.3137 16 7 9.7324 -2.3275 1.3879 17 14 8.7412 -3.9371 -0.6375 18 1 7.8474 -3.6937 -1.7981 19 1 10.0590 -4.4226 -1.1201 20 1 8.1317 -4.9599 0.2500 21 6 5.5522 2.5884 -0.0006 22 9 6.1748 3.7875 -0.0005 23 6 4.1723 2.5254 -0.0006 24 9 3.4413 3.6615 -0.0010 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.8083 -0.8568 -0.0006 29 1 6.2472 -0.7305 -0.0002 30 1 8.1450 2.2058 -0.4413 31 1 10.1712 -3.1396 1.6862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192986355.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:45 Heat of formation + Delta-G solvation = -232.658289 kcal Electronic energy + Delta-G solvation = -24968.403340 eV Core-core repulsion = 20591.962806 eV Total energy + Delta-G solvation = -4376.440535 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 321.036 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.40656 -48.46744 -40.51949 -39.02426 -36.49353 -35.62857 -34.89766 -34.35878 -33.38358 -30.55484 -29.93642 -27.58917 -26.53458 -24.01456 -22.98500 -21.38583 -19.36420 -18.65002 -18.23721 -18.03600 -17.20413 -16.87349 -16.65424 -16.49473 -16.13413 -15.98825 -15.40188 -15.12256 -14.86177 -14.34728 -14.22479 -14.01107 -13.78012 -13.44197 -13.30815 -12.61319 -12.37640 -12.23985 -12.19301 -12.00157 -11.41472 -11.29670 -11.06437 -10.92427 -10.79021 -10.72559 -10.65229 -10.57392 -10.49330 -9.48263 -9.12774 -8.83481 -8.29028 -6.96703 -5.64236 0.43049 0.97392 1.74409 2.38609 2.48364 2.92055 3.01493 3.07105 3.43954 3.64964 3.83825 4.11351 4.31245 4.38389 4.53503 4.65939 4.86013 4.96285 5.03512 5.15176 5.31718 5.41865 5.53647 5.83784 5.89458 6.07730 6.15141 6.24193 6.33087 6.65557 7.04886 7.27462 7.62843 7.63532 8.59784 9.97832 Molecular weight = 321.04amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.004827 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.757743 B = 5799.468082 C = 7279.000745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.351 6.351 3 C 0.517 3.483 4 O -0.501 6.501 5 C -0.186 4.186 6 C -0.001 4.001 7 C -0.174 4.174 8 C 0.243 3.757 9 N -1.058 6.058 10 S 2.690 3.310 11 O -0.985 6.985 12 O -0.980 6.980 13 C -1.023 5.023 14 H 0.115 0.885 15 C 0.135 3.865 16 N -0.836 5.836 17 Si 0.925 3.075 18 H -0.258 1.258 19 H -0.270 1.270 20 H -0.268 1.268 21 C 0.004 3.996 22 F -0.123 7.123 23 C 0.162 3.838 24 F -0.106 7.106 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.160 0.840 29 H 0.187 0.813 30 H 0.421 0.579 31 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.721 1.379 -4.849 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.268 6.268 3 C 0.363 3.637 4 O -0.389 6.389 5 C -0.190 4.190 6 C -0.021 4.021 7 C -0.195 4.195 8 C 0.139 3.861 9 N -0.795 5.795 10 S 2.791 3.209 11 O -0.975 6.975 12 O -0.970 6.970 13 C -1.157 5.157 14 H 0.133 0.867 15 C -0.085 4.085 16 N -0.464 5.464 17 Si 0.748 3.252 18 H -0.182 1.182 19 H -0.194 1.194 20 H -0.193 1.193 21 C -0.021 4.021 22 F -0.101 7.101 23 C 0.140 3.860 24 F -0.084 7.084 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.121 0.879 28 H 0.177 0.823 29 H 0.204 0.796 30 H 0.256 0.744 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.273 1.735 -3.813 12.968 hybrid contribution -0.189 -0.164 -1.075 1.103 sum -12.462 1.571 -4.888 13.478 Atomic orbital electron populations 1.23280 0.75873 1.03784 1.02631 1.86548 1.23555 1.32183 1.84522 1.20605 0.88302 0.81705 0.73129 1.90898 1.66616 1.35738 1.45692 1.18779 0.90314 0.92652 1.17212 1.20955 0.92650 0.97656 0.90806 1.21777 0.95895 0.98231 1.03629 1.17537 0.84203 0.92111 0.92209 1.54549 1.11211 1.45085 1.68704 1.01593 0.71763 0.73723 0.73829 1.93423 1.32815 1.84399 1.86904 1.93439 1.77129 1.85599 1.40853 1.30477 1.43825 1.13591 1.27789 0.86739 1.24770 0.90083 1.00497 0.93185 1.69877 1.24128 1.32097 1.20308 0.86048 0.79356 0.79772 0.80064 1.18196 1.19445 1.19308 1.17095 0.88366 0.81423 1.15203 1.91506 1.82106 1.41802 1.94731 1.17233 0.86889 0.82124 0.99707 1.91601 1.76519 1.47466 1.92785 0.91798 0.91845 0.87858 0.82260 0.79628 0.74393 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.35 -4.15 9.80 -40.70 -0.40 -4.55 16 3 C 0.52 7.45 7.88 34.39 0.27 7.72 16 4 O -0.50 -8.32 15.12 -19.29 -0.29 -8.61 16 5 C -0.19 -2.73 5.88 -104.91 -0.62 -3.35 16 6 C 0.00 -0.02 9.55 -39.57 -0.38 -0.40 16 7 C -0.17 -2.85 8.83 -39.82 -0.35 -3.20 16 8 C 0.24 4.24 6.19 -83.78 -0.52 3.72 16 9 N -1.06 -19.73 5.68 32.44 0.18 -19.55 16 10 S 2.69 64.68 4.62 -107.50 -0.50 64.18 16 11 O -0.99 -26.55 18.02 -57.17 -1.03 -27.58 16 12 O -0.98 -26.06 17.41 -57.17 -1.00 -27.06 16 13 C -1.02 -24.31 7.56 30.60 0.23 -24.08 16 14 H 0.11 2.37 6.89 -52.49 -0.36 2.01 16 15 C 0.13 3.32 5.46 -17.82 -0.10 3.22 16 16 N -0.84 -22.22 13.19 55.43 0.73 -21.49 16 17 Si 0.92 18.12 29.54 -169.99 -5.02 13.10 16 18 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 21 C 0.00 0.07 7.31 -39.25 -0.29 -0.22 16 22 F -0.12 -2.03 16.82 2.25 0.04 -1.99 16 23 C 0.16 2.60 7.29 -38.91 -0.28 2.32 16 24 F -0.11 -1.78 15.46 2.25 0.03 -1.74 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.16 1.70 7.60 -52.48 -0.40 1.30 16 29 H 0.19 3.21 4.43 -52.49 -0.23 2.98 16 30 H 0.42 6.70 8.72 -34.48 -0.30 6.40 16 31 H 0.30 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 303.86 15.07 4.58 4.58 Total: -1.00 -32.44 303.86 -5.33 -37.76 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -1.70 Total: 5.81 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -0.96 Total: -12.88 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.92 Total: -41.03 kcal Atomic # 8 Polarization: -65.07 SS G_CDS: -2.72 Total: -67.79 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.07 Total: -3.73 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.02 Total: 13.10 kcal Atomic # 16 Polarization: 64.68 SS G_CDS: -0.50 Total: 64.18 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.44 -5.33 -37.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986355.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.895 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds