Wall clock time and date at job start Tue Mar 31 2020 12:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34839 * 125.63618 * 2 1 4 4 C 1.40771 * 107.07160 * 179.72809 * 3 2 1 5 5 C 1.36241 * 106.72176 * 0.40230 * 4 3 2 6 6 C 1.47136 * 125.96091 * 179.85203 * 5 4 3 7 7 N 1.30034 * 125.23173 * 180.02562 * 6 5 4 8 8 C 1.32678 * 115.83440 * 180.16361 * 7 6 5 9 9 C 1.47142 * 122.55496 * 179.79886 * 8 7 6 10 10 O 1.21549 * 120.00534 * 179.70956 * 9 8 7 11 11 O 1.34809 * 119.99689 * 359.71268 * 9 8 7 12 12 C 1.45206 * 116.99930 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46777 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47240 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00243 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46755 * 90.00221 * 19 17 15 21 21 H 1.48494 * 109.47308 * 209.99919 * 19 17 15 22 22 H 1.48496 * 109.47178 * 330.00271 * 19 17 15 23 23 C 1.36254 * 114.89452 * 359.53289 * 8 7 6 24 24 S 1.70990 * 109.06182 * 0.24764 * 23 8 7 25 25 O 1.34238 * 125.64378 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46632 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47469 * 299.99931 * 1 2 3 28 28 H 1.08999 * 109.47472 * 60.00540 * 1 2 3 29 29 H 1.08000 * 126.46842 * 359.97438 * 3 2 1 30 30 H 1.07992 * 126.63954 * 180.26491 * 4 3 2 31 31 H 1.09000 * 109.47070 * 299.99994 * 12 11 9 32 32 H 1.09001 * 109.46626 * 60.00012 * 12 11 9 33 33 H 1.09000 * 109.47486 * 299.99948 * 13 12 11 34 34 H 1.09001 * 109.47362 * 60.00671 * 13 12 11 35 35 H 1.09000 * 109.46866 * 300.00212 * 14 13 12 36 36 H 1.08996 * 109.47261 * 59.99820 * 14 13 12 37 37 H 0.96992 * 120.00032 * 179.97438 * 18 17 15 38 38 H 1.07997 * 125.46735 * 180.22579 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0959 0.0000 4 6 3.6270 0.6477 0.0064 5 6 3.5833 -0.7140 0.0008 6 6 4.7458 -1.6158 0.0013 7 7 4.6875 -2.9149 -0.0045 8 6 5.8545 -3.5460 0.0006 9 6 5.9610 -5.0136 -0.0005 10 8 7.0548 -5.5437 -0.0010 11 8 4.8453 -5.7703 -0.0011 12 6 5.0259 -7.2111 -0.0027 13 6 3.6581 -7.8965 -0.0025 14 6 3.8484 -9.4147 -0.0036 15 6 2.5011 -10.0898 -0.0039 16 1 1.5993 -9.4955 -0.0038 17 6 2.4198 -11.4661 -0.0055 18 7 3.5180 -12.1898 -0.0061 19 14 0.7497 -12.3031 -0.0052 20 1 0.3063 -12.5233 -1.4052 21 1 0.8509 -13.6096 0.6932 22 1 -0.2355 -11.4417 0.6965 23 6 6.9470 -2.7318 0.0012 24 16 6.4289 -1.1022 0.0019 25 8 2.2892 -1.0909 0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.9607 2.1236 -0.0004 30 1 4.5138 1.2640 0.0121 31 1 5.5807 -7.5066 -0.8932 32 1 5.5813 -7.5085 0.8868 33 1 3.1036 -7.6008 0.8882 34 1 3.1024 -7.5990 -0.8918 35 1 4.4030 -9.7106 -0.8940 36 1 4.4039 -9.7119 0.8859 37 1 3.4607 -13.1581 -0.0068 38 1 7.9751 -3.0625 0.0015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046419208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:40 Heat of formation + Delta-G solvation = -38.562343 kcal Electronic energy + Delta-G solvation = -22672.900145 eV Core-core repulsion = 18994.938866 eV Total energy + Delta-G solvation = -3677.961278 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.95637 -40.69982 -39.19966 -36.45498 -33.94628 -33.64374 -33.05751 -31.67212 -30.83335 -27.82623 -27.36530 -25.75106 -23.50827 -22.56931 -22.32532 -20.72887 -20.33080 -19.76062 -19.09189 -17.54372 -16.73213 -16.64111 -16.62616 -16.36220 -15.99796 -15.25707 -14.86814 -14.44246 -14.17766 -13.82040 -13.58481 -13.45430 -13.35194 -13.31978 -13.13031 -12.43448 -12.27346 -12.13282 -12.11664 -11.85379 -10.94659 -10.80346 -10.61006 -10.59886 -10.51866 -10.36504 -10.33122 -10.21930 -9.74391 -9.65722 -9.48716 -9.13233 -8.36155 -8.35649 -6.00589 -4.03259 -0.28193 0.46202 0.98294 0.99683 1.78016 2.28708 2.54096 2.82076 3.03626 3.33502 3.39311 3.43346 3.50500 4.26345 4.46051 4.49278 4.50447 4.71614 4.82571 4.95887 5.06679 5.23553 5.28938 5.30255 5.35364 5.52329 5.60932 5.62716 5.63758 6.02339 6.04381 6.43758 6.59367 6.63903 6.81822 7.02223 7.05524 7.63849 7.75049 7.85586 7.98144 8.39616 9.02984 9.60797 11.10953 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.002514 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.885868 B =11136.803356 C =13295.636419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.015 3.985 3 C -0.214 4.214 4 C -0.163 4.163 5 C 0.046 3.954 6 C 0.104 3.896 7 N -0.400 5.400 8 C 0.038 3.962 9 C 0.539 3.461 10 O -0.502 6.502 11 O -0.333 6.333 12 C 0.066 3.934 13 C -0.109 4.109 14 C 0.025 3.975 15 C -0.520 4.520 16 H 0.058 0.942 17 C 0.056 3.944 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.215 4.215 24 S 0.236 5.764 25 O -0.145 6.145 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 32.556 0.036 32.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.038 4.038 3 C -0.234 4.234 4 C -0.186 4.186 5 C -0.007 4.007 6 C -0.171 4.171 7 N -0.114 5.114 8 C -0.097 4.097 9 C 0.380 3.620 10 O -0.390 6.390 11 O -0.248 6.248 12 C -0.006 4.006 13 C -0.146 4.146 14 C -0.013 4.013 15 C -0.558 4.558 16 H 0.076 0.924 17 C -0.145 4.145 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.356 4.356 24 S 0.494 5.506 25 O -0.040 6.040 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.174 0.826 30 H 0.174 0.826 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.814 32.490 0.035 32.612 hybrid contribution -0.495 -1.580 -0.010 1.656 sum 2.319 30.910 0.024 30.997 Atomic orbital electron populations 1.20433 0.84449 1.04857 1.03906 1.22821 0.94418 0.83840 1.02720 1.21459 0.91890 0.99802 1.10204 1.21767 0.99065 0.91990 1.05784 1.18723 0.80791 0.90536 1.10676 1.24373 0.94596 0.91012 1.07116 1.67221 1.26868 1.05399 1.11941 1.19470 0.87146 0.93560 1.09552 1.19771 0.83099 0.85870 0.73278 1.90878 1.28326 1.73579 1.46256 1.86700 1.33707 1.22123 1.82229 1.23620 1.01540 0.73188 1.02291 1.21770 0.92458 0.98213 1.02183 1.19055 0.97719 0.86809 0.97676 1.21181 0.92460 0.91371 1.50816 0.92399 1.25031 0.96674 0.97563 0.95236 1.69968 1.27135 1.05667 1.50690 0.86540 0.84189 0.78850 0.78127 1.20622 1.21206 1.19787 1.27006 1.05559 0.97242 1.05841 1.83675 0.98614 1.03626 1.64654 1.84191 1.15045 1.34541 1.70217 0.89939 0.89147 0.89138 0.82561 0.82633 0.91267 0.91271 0.92031 0.92033 0.96216 0.96199 0.92921 0.78198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.41 36.00 0.37 -0.05 16 2 C 0.02 0.14 7.31 -35.52 -0.26 -0.12 16 3 C -0.21 -1.57 10.78 -39.83 -0.43 -2.00 16 4 C -0.16 -1.31 10.62 -39.34 -0.42 -1.73 16 5 C 0.05 0.52 7.24 -36.69 -0.27 0.25 16 6 C 0.10 1.24 7.45 -14.70 -0.11 1.13 16 7 N -0.40 -6.09 10.58 -8.09 -0.09 -6.18 16 8 C 0.04 0.56 6.68 -84.60 -0.57 -0.01 16 9 C 0.54 9.44 7.94 34.34 0.27 9.72 16 10 O -0.50 -9.30 16.47 -19.30 -0.32 -9.62 16 11 O -0.33 -6.43 10.14 -40.79 -0.41 -6.85 16 12 C 0.07 1.32 5.48 37.16 0.20 1.52 16 13 C -0.11 -2.40 5.53 -26.73 -0.15 -2.55 16 14 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 15 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 16 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 19 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.21 -2.23 10.62 30.02 0.32 -1.91 16 24 S 0.24 1.80 22.91 -107.50 -2.46 -0.66 16 25 O -0.14 -1.81 10.67 4.56 0.05 -1.76 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.16 0.70 8.06 -52.49 -0.42 0.27 16 30 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.20 1.66 8.01 -52.49 -0.42 1.24 16 LS Contribution 357.96 15.07 5.39 5.39 Total: -1.00 -35.04 357.96 -8.31 -43.35 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: -4.61 Total: -5.04 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -1.57 Total: -9.05 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.65 Total: -32.74 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.68 Total: -18.23 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.46 Total: -0.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.04 -8.31 -43.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046419208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.785 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds