Wall clock time and date at job start Tue Mar 31 2020 12:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34839 * 125.63618 * 2 1 4 4 C 1.40771 * 107.07160 * 179.72809 * 3 2 1 5 5 C 1.36241 * 106.72176 * 0.40230 * 4 3 2 6 6 C 1.47136 * 125.96091 * 179.85203 * 5 4 3 7 7 N 1.30034 * 125.23173 * 180.02562 * 6 5 4 8 8 C 1.32678 * 115.83440 * 180.16361 * 7 6 5 9 9 C 1.47142 * 122.55496 * 179.79886 * 8 7 6 10 10 O 1.21549 * 120.00534 * 179.70956 * 9 8 7 11 11 O 1.34809 * 119.99689 * 359.71268 * 9 8 7 12 12 C 1.45206 * 116.99930 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.46777 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.46997 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47240 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31522 * 120.00243 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46755 * 90.00221 * 19 17 15 21 21 H 1.48494 * 109.47308 * 209.99919 * 19 17 15 22 22 H 1.48496 * 109.47178 * 330.00271 * 19 17 15 23 23 C 1.36254 * 114.89452 * 359.53289 * 8 7 6 24 24 S 1.70990 * 109.06182 * 0.24764 * 23 8 7 25 25 O 1.34238 * 125.64378 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46632 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47469 * 299.99931 * 1 2 3 28 28 H 1.08999 * 109.47472 * 60.00540 * 1 2 3 29 29 H 1.08000 * 126.46842 * 359.97438 * 3 2 1 30 30 H 1.07992 * 126.63954 * 180.26491 * 4 3 2 31 31 H 1.09000 * 109.47070 * 299.99994 * 12 11 9 32 32 H 1.09001 * 109.46626 * 60.00012 * 12 11 9 33 33 H 1.09000 * 109.47486 * 299.99948 * 13 12 11 34 34 H 1.09001 * 109.47362 * 60.00671 * 13 12 11 35 35 H 1.09000 * 109.46866 * 300.00212 * 14 13 12 36 36 H 1.08996 * 109.47261 * 59.99820 * 14 13 12 37 37 H 0.96992 * 120.00032 * 179.97438 * 18 17 15 38 38 H 1.07997 * 125.46735 * 180.22579 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0959 0.0000 4 6 3.6270 0.6477 0.0064 5 6 3.5833 -0.7140 0.0008 6 6 4.7458 -1.6158 0.0013 7 7 4.6875 -2.9149 -0.0045 8 6 5.8545 -3.5460 0.0006 9 6 5.9610 -5.0136 -0.0005 10 8 7.0548 -5.5437 -0.0010 11 8 4.8453 -5.7703 -0.0011 12 6 5.0259 -7.2111 -0.0027 13 6 3.6581 -7.8965 -0.0025 14 6 3.8484 -9.4147 -0.0036 15 6 2.5011 -10.0898 -0.0039 16 1 1.5993 -9.4955 -0.0038 17 6 2.4198 -11.4661 -0.0055 18 7 3.5180 -12.1898 -0.0061 19 14 0.7497 -12.3031 -0.0052 20 1 0.3063 -12.5233 -1.4052 21 1 0.8509 -13.6096 0.6932 22 1 -0.2355 -11.4417 0.6965 23 6 6.9470 -2.7318 0.0012 24 16 6.4289 -1.1022 0.0019 25 8 2.2892 -1.0909 0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.9607 2.1236 -0.0004 30 1 4.5138 1.2640 0.0121 31 1 5.5807 -7.5066 -0.8932 32 1 5.5813 -7.5085 0.8868 33 1 3.1036 -7.6008 0.8882 34 1 3.1024 -7.5990 -0.8918 35 1 4.4030 -9.7106 -0.8940 36 1 4.4039 -9.7119 0.8859 37 1 3.4607 -13.1581 -0.0068 38 1 7.9751 -3.0625 0.0015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046419208.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:39 Heat of formation + Delta-G solvation = -60.085431 kcal Electronic energy + Delta-G solvation = -22673.833456 eV Core-core repulsion = 18994.938866 eV Total energy + Delta-G solvation = -3678.894590 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.087 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.62135 -41.90268 -40.32519 -37.93908 -35.98499 -34.29260 -33.81248 -33.62660 -31.59803 -29.29981 -28.42050 -26.98879 -25.08765 -23.77424 -22.99135 -22.23574 -21.55700 -20.78643 -20.01008 -18.76210 -18.34373 -17.88233 -17.62274 -17.48747 -17.39229 -16.51149 -16.09157 -15.94533 -15.25955 -15.03964 -14.78623 -14.22000 -13.99302 -13.94047 -13.90717 -13.87928 -13.78515 -13.72910 -13.20840 -12.85922 -12.77851 -12.55360 -12.47977 -12.15572 -12.09104 -11.55671 -11.50410 -11.37484 -11.29486 -11.16960 -10.89479 -10.59756 -10.44244 -9.03368 -8.24237 -6.36011 -1.06948 -0.25959 0.03925 0.15505 0.98225 1.39080 1.41217 1.51824 1.56622 1.56836 1.93929 1.97201 2.39364 2.65244 3.09229 3.42839 3.77429 3.84774 3.92309 3.95123 3.96459 3.99020 4.31565 4.40688 4.54793 4.69525 4.72605 4.74552 4.75935 4.78567 4.96186 4.99757 5.15383 5.21686 5.44202 5.53067 5.58953 5.76457 5.96000 6.15320 6.20557 6.55187 6.78770 7.33264 8.88094 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.012783 B = 0.002514 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.885868 B =11136.803356 C =13295.636419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.000 4.000 3 C -0.212 4.212 4 C -0.142 4.142 5 C 0.002 3.998 6 C 0.078 3.922 7 N -0.453 5.453 8 C 0.000 4.000 9 C 0.537 3.463 10 O -0.521 6.521 11 O -0.346 6.346 12 C 0.076 3.924 13 C -0.094 4.094 14 C 0.029 3.971 15 C -0.546 4.546 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.970 3.030 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.263 1.263 23 C -0.211 4.211 24 S 0.368 5.632 25 O -0.186 6.186 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.190 0.810 30 H 0.189 0.811 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H -0.001 1.001 36 H 0.000 1.000 37 H 0.266 0.734 38 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.173 35.940 0.033 36.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 C -0.231 4.231 4 C -0.165 4.165 5 C -0.051 4.051 6 C -0.196 4.196 7 N -0.169 5.169 8 C -0.136 4.136 9 C 0.379 3.621 10 O -0.411 6.411 11 O -0.262 6.262 12 C 0.003 3.997 13 C -0.132 4.132 14 C -0.008 4.008 15 C -0.584 4.584 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.572 5.572 19 Si 0.794 3.206 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.353 4.353 24 S 0.627 5.373 25 O -0.083 6.083 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.207 0.793 30 H 0.206 0.794 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.494 35.915 0.031 36.002 hybrid contribution -0.342 -2.397 -0.010 2.421 sum 2.152 33.518 0.021 33.587 Atomic orbital electron populations 1.20615 0.82571 1.04636 1.05851 1.23617 0.95775 0.83703 1.02182 1.21899 0.91303 1.00838 1.09057 1.22228 1.00619 0.90776 1.02867 1.19119 0.80452 0.91721 1.13787 1.24800 0.97504 0.90581 1.06697 1.67131 1.28031 1.07514 1.14186 1.19153 0.88623 0.91901 1.13881 1.20342 0.82209 0.87195 0.72306 1.90842 1.28506 1.74287 1.47487 1.86679 1.35180 1.21438 1.82853 1.23282 0.99890 0.74193 1.02375 1.21465 0.93879 0.95572 1.02236 1.18916 0.96542 0.89699 0.95667 1.21598 0.93381 0.92210 1.51164 0.91990 1.26013 1.01056 0.98294 0.94462 1.70096 1.29674 1.06165 1.51297 0.85369 0.78932 0.77680 0.78608 1.19610 1.20492 1.18727 1.27446 1.05649 0.99161 1.03056 1.83143 0.93569 0.99568 1.60985 1.84158 1.16208 1.36641 1.71319 0.91258 0.87102 0.87093 0.79299 0.79392 0.91211 0.91219 0.91917 0.91899 0.98212 0.98191 0.92567 0.76263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.41 71.23 0.74 -0.02 16 2 C 0.00 0.00 7.31 24.90 0.18 0.18 16 3 C -0.21 -2.54 10.78 22.11 0.24 -2.31 16 4 C -0.14 -1.90 10.62 22.42 0.24 -1.66 16 5 C 0.00 0.04 7.24 24.14 0.17 0.21 16 6 C 0.08 1.81 7.45 87.30 0.65 2.46 16 7 N -0.45 -14.27 10.58 -179.51 -1.90 -16.17 16 8 C 0.00 -0.01 6.68 40.89 0.27 0.26 16 9 C 0.54 19.60 7.94 70.16 0.56 20.15 16 10 O -0.52 -19.93 16.47 19.68 0.32 -19.61 16 11 O -0.35 -14.07 10.14 -57.21 -0.58 -14.65 16 12 C 0.08 3.15 5.48 71.98 0.39 3.55 16 13 C -0.09 -4.32 5.53 30.60 0.17 -4.15 16 14 C 0.03 1.60 4.97 29.85 0.15 1.75 16 15 C -0.55 -32.24 9.11 25.60 0.23 -32.01 16 16 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 18 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 19 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 23 C -0.21 -4.05 10.62 67.36 0.72 -3.33 16 24 S 0.37 4.48 22.91 -56.49 -1.29 3.19 16 25 O -0.19 -4.79 10.67 -6.59 -0.07 -4.86 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.11 0.56 8.14 -2.39 -0.02 0.55 16 28 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 30 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 31 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.22 3.16 8.01 -2.91 -0.02 3.14 16 Total: -1.00 -80.14 357.96 5.05 -75.09 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.08 Total: 1.78 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 5.18 Total: -14.46 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -1.61 Total: -73.84 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.33 Total: -39.11 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.29 Total: 3.19 kcal Total: -80.14 5.05 -75.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046419208.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.007 kcal (2) G-P(sol) polarization free energy of solvation -80.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds