Wall clock time and date at job start Tue Mar 31 2020 13:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30839 * 125.90380 * 2 1 4 4 N 1.40083 * 108.20752 * 180.02562 * 3 2 1 5 5 H 0.97003 * 126.03396 * 180.02562 * 4 3 2 6 6 C 1.34942 * 107.92554 * 359.97438 * 4 3 2 7 7 C 1.50708 * 126.12576 * 179.97438 * 6 4 3 8 8 C 1.35314 * 107.75007 * 0.22768 * 6 4 3 9 9 S 1.76195 * 126.04481 * 179.76489 * 8 6 4 10 10 O 1.42089 * 106.40594 * 191.40212 * 9 8 6 11 11 O 1.42100 * 106.40259 * 324.32352 * 9 8 6 12 12 N 1.65605 * 107.21502 * 77.86061 * 9 8 6 13 13 C 1.38733 * 119.99955 * 61.74706 * 12 9 8 14 14 C 1.38752 * 120.29318 * 36.68756 * 13 12 9 15 15 C 1.38163 * 120.02168 * 180.02562 * 14 13 12 16 16 C 1.38904 * 120.63069 * 0.02562 * 15 14 13 17 17 C 1.36451 * 120.59393 * 359.97438 * 16 15 14 18 18 C 1.40728 * 119.94886 * 359.72592 * 17 16 15 19 19 C 1.41051 * 120.30284 * 180.27395 * 18 17 16 20 20 H 1.07997 * 119.99891 * 204.57202 * 19 18 17 21 21 C 1.39928 * 119.99796 * 24.58014 * 19 18 17 22 22 N 1.30877 * 120.00117 * 19.12348 * 21 19 18 23 23 Si 1.86806 * 119.99759 * 199.12122 * 21 19 18 24 24 H 1.48505 * 109.47096 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46809 * 119.99813 * 23 21 19 26 26 H 1.48497 * 109.47375 * 240.00404 * 23 21 19 27 27 H 1.08995 * 109.47631 * 91.39476 * 1 2 3 28 28 H 1.09003 * 109.47321 * 211.39633 * 1 2 3 29 29 H 1.09003 * 109.47280 * 331.39227 * 1 2 3 30 30 H 1.08998 * 109.46406 * 90.02937 * 7 6 4 31 31 H 1.08998 * 109.46820 * 330.03297 * 7 6 4 32 32 H 1.08992 * 109.47076 * 210.03065 * 7 6 4 33 33 H 0.97000 * 119.99942 * 241.74521 * 12 9 8 34 34 H 1.07998 * 119.99060 * 0.02562 * 14 13 12 35 35 H 1.08002 * 119.68314 * 179.97438 * 15 14 13 36 36 H 1.08001 * 119.70151 * 179.97438 * 16 15 14 37 37 H 1.07997 * 120.02291 * 179.97438 * 17 16 15 38 38 H 0.96999 * 119.99394 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6340 -0.0006 5 1 4.3908 1.2078 -0.0004 6 6 3.6141 -0.7154 -0.0004 7 6 4.8350 -1.5991 -0.0014 8 6 2.3271 -1.1331 -0.0048 9 16 1.7807 -2.8082 -0.0123 10 8 0.3866 -2.7744 -0.2847 11 8 2.7108 -3.5301 -0.8080 12 7 1.9416 -3.3831 1.5324 13 6 1.2265 -2.7990 2.5679 14 6 -0.0666 -2.3430 2.3555 15 6 -0.7734 -1.7617 3.3906 16 6 -0.2020 -1.6266 4.6495 17 6 1.0678 -2.0662 4.8866 18 6 1.8077 -2.6678 3.8518 19 6 3.1188 -3.1301 4.0902 20 1 3.8178 -3.2173 3.2716 21 6 3.5137 -3.4758 5.3873 22 7 2.6111 -3.7340 6.2992 23 14 5.3292 -3.5689 5.8173 24 1 6.1396 -3.2339 4.6189 25 1 5.6306 -2.6028 6.9040 26 1 5.6606 -4.9435 6.2710 27 1 -0.3634 -0.0250 -1.0273 28 1 -0.3634 -0.8772 0.5354 29 1 -0.3634 0.9022 0.4921 30 1 5.1299 -1.8123 1.0261 31 1 5.6508 -1.0909 -0.5156 32 1 4.6072 -2.5328 -0.5153 33 1 2.5357 -4.1282 1.7132 34 1 -0.5207 -2.4424 1.3807 35 1 -1.7794 -1.4083 3.2190 36 1 -0.7680 -1.1696 5.4477 37 1 1.5031 -1.9562 5.8689 38 1 2.8849 -3.9732 7.1985 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261029607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:18 Heat of formation + Delta-G solvation = 12.583229 kcal Electronic energy + Delta-G solvation = -25864.257031 eV Core-core repulsion = 22220.806342 eV Total energy + Delta-G solvation = -3643.450689 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.20385 -38.09929 -36.75782 -35.38215 -34.00665 -33.67307 -33.28925 -31.68732 -29.71296 -28.11324 -27.76154 -27.02933 -25.22134 -21.60874 -21.33725 -20.74750 -20.00779 -18.69160 -17.58479 -17.49247 -16.82774 -16.51829 -15.59290 -15.17433 -15.10034 -14.66833 -14.40777 -13.80858 -13.41972 -13.23992 -13.18090 -12.85319 -12.74768 -12.40328 -12.22420 -12.19353 -11.92163 -11.64068 -11.56302 -11.36479 -11.30927 -11.21792 -11.12767 -10.92527 -10.57851 -10.32080 -9.99911 -9.70469 -9.30980 -9.28233 -9.18298 -8.99217 -7.51715 -7.15950 -6.82776 -4.44222 0.98505 1.71509 2.48890 2.67864 2.83369 2.92538 2.98195 3.00690 3.13759 3.70242 3.80549 4.25253 4.50904 4.51626 4.63277 4.93225 5.09867 5.43330 5.51588 5.55029 5.78657 5.92134 5.94812 6.08580 6.20584 6.25959 6.32060 6.50972 6.72139 6.78421 6.94359 7.10831 7.15168 7.22145 7.42287 7.58833 7.62592 7.89855 8.00444 8.08601 8.15962 8.52058 8.72756 8.86350 10.04437 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.006311 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.992874 B = 4435.481421 C = 5191.065705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.177 3.823 3 N -0.301 5.301 4 N -0.468 5.468 5 H 0.437 0.563 6 C 0.219 3.781 7 C -0.137 4.137 8 C -0.805 4.805 9 S 2.713 3.287 10 O -0.960 6.960 11 O -0.982 6.982 12 N -1.023 6.023 13 C 0.023 3.977 14 C -0.134 4.134 15 C -0.217 4.217 16 C -0.112 4.112 17 C -0.150 4.150 18 C 0.108 3.892 19 C -0.459 4.459 20 H 0.079 0.921 21 C 0.078 3.922 22 N -0.785 5.785 23 Si 0.903 3.097 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.273 1.273 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.417 0.583 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.589 4.144 -7.364 9.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.007 3.993 3 N -0.123 5.123 4 N -0.172 5.172 5 H 0.282 0.718 6 C 0.083 3.917 7 C -0.195 4.195 8 C -0.903 4.903 9 S 2.803 3.197 10 O -0.950 6.950 11 O -0.972 6.972 12 N -0.775 5.775 13 C -0.074 4.074 14 C -0.155 4.155 15 C -0.237 4.237 16 C -0.132 4.132 17 C -0.170 4.170 18 C 0.103 3.897 19 C -0.489 4.489 20 H 0.097 0.903 21 C -0.141 4.141 22 N -0.409 5.409 23 Si 0.727 3.273 24 H -0.184 1.184 25 H -0.197 1.197 26 H -0.199 1.199 27 H 0.102 0.898 28 H 0.129 0.871 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.255 0.745 34 H 0.153 0.847 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.136 0.864 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.212 5.046 -7.970 9.965 hybrid contribution 1.936 -0.155 0.962 2.167 sum 5.147 4.891 -7.008 9.976 Atomic orbital electron populations 1.20776 0.85535 1.05634 1.04009 1.21865 0.96899 0.88158 0.92335 1.77299 0.85904 1.22018 1.27093 1.46614 1.07963 1.04833 1.57751 0.71829 1.20888 0.95675 0.85120 0.89982 1.21153 0.92622 1.00098 1.05602 1.31212 0.99723 1.24852 1.34533 1.01452 0.73722 0.72361 0.72126 1.93457 1.30990 1.86760 1.83813 1.93466 1.64651 1.71460 1.67648 1.52275 1.57431 1.43410 1.24341 1.17221 0.91148 1.09038 0.90001 1.21347 0.92502 1.01419 1.00270 1.20239 0.99412 1.10342 0.93700 1.20491 0.96093 1.00870 0.95727 1.20933 0.94579 1.01671 0.99831 1.17486 0.92602 0.89748 0.89912 1.19381 0.97041 1.38793 0.93674 0.90309 1.25901 0.99578 0.92474 0.96168 1.69856 1.35442 1.31364 1.04276 0.86345 0.82724 0.78696 0.79498 1.18415 1.19747 1.19863 0.89841 0.87107 0.90538 0.88046 0.89951 0.86416 0.74547 0.84688 0.88819 0.89386 0.86439 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 9.54 36.00 0.34 -1.27 16 2 C 0.18 3.13 7.21 -82.41 -0.59 2.54 16 3 N -0.30 -5.15 12.70 33.67 0.43 -4.72 16 4 N -0.47 -6.63 7.36 33.48 0.25 -6.39 16 5 H 0.44 4.39 8.96 -182.61 -1.64 2.75 16 6 C 0.22 3.33 7.20 -82.26 -0.59 2.74 16 7 C -0.14 -1.64 10.20 36.01 0.37 -1.27 16 8 C -0.81 -14.13 6.02 -40.01 -0.24 -14.38 16 9 S 2.71 49.35 5.52 -107.50 -0.59 48.76 16 10 O -0.96 -18.64 12.69 -57.18 -0.73 -19.37 16 11 O -0.98 -18.17 15.78 -57.18 -0.90 -19.08 16 12 N -1.02 -19.87 5.32 32.72 0.17 -19.69 16 13 C 0.02 0.51 6.28 -83.29 -0.52 -0.01 16 14 C -0.13 -2.90 7.91 -39.42 -0.31 -3.21 16 15 C -0.22 -4.62 10.03 -39.36 -0.39 -5.02 16 16 C -0.11 -2.51 9.97 -39.98 -0.40 -2.91 16 17 C -0.15 -3.66 8.64 -39.29 -0.34 -3.99 16 18 C 0.11 2.63 5.58 -106.63 -0.60 2.04 16 19 C -0.46 -10.89 8.43 -37.88 -0.32 -11.21 16 20 H 0.08 1.74 7.33 -52.49 -0.38 1.35 16 21 C 0.08 1.79 5.11 -17.33 -0.09 1.71 16 22 N -0.78 -18.88 11.04 55.55 0.61 -18.26 16 23 Si 0.90 17.23 29.60 -169.99 -5.03 12.20 16 24 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.11 1.90 3.69 -51.93 -0.19 1.71 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.12 1.52 5.88 -51.93 -0.31 1.22 16 33 H 0.42 7.55 8.13 -34.47 -0.28 7.27 16 34 H 0.14 2.78 4.04 -52.49 -0.21 2.57 16 35 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.12 2.95 6.21 -52.49 -0.33 2.63 16 38 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -29.91 324.66 -9.59 -39.50 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -5.01 Total: 16.40 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: -3.69 Total: -34.25 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 1.46 Total: -49.06 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.63 Total: -38.45 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Atomic # 16 Polarization: 49.35 SS G_CDS: -0.59 Total: 48.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.91 -9.59 -39.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261029607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.087 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds