Wall clock time and date at job start Tue Mar 31 2020 13:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35732 * 117.00178 * 2 1 4 4 C 1.39193 * 119.64610 * 180.02562 * 3 2 1 5 5 C 1.37570 * 119.59863 * 180.02562 * 4 3 2 6 6 C 1.41285 * 118.90305 * 359.95488 * 5 4 3 7 7 N 1.34839 * 128.97932 * 180.02562 * 6 5 4 8 8 C 1.28607 * 117.84696 * 180.02562 * 7 6 5 9 9 O 1.35352 * 124.79418 * 179.97438 * 8 7 6 10 10 C 1.42904 * 116.99714 * 180.02562 * 9 8 7 11 11 H 1.09000 * 110.64192 * 328.30838 * 10 9 8 12 12 C 1.55158 * 110.71496 * 204.97807 * 10 9 8 13 13 C 1.55137 * 101.48321 * 205.96593 * 12 10 9 14 14 N 1.47434 * 104.71970 * 37.29493 * 13 12 10 15 15 C 1.36931 * 125.64526 * 155.81715 * 14 13 12 16 16 H 1.08002 * 120.00103 * 179.69487 * 15 14 13 17 17 C 1.38812 * 120.00429 * 359.68990 * 15 14 13 18 18 N 1.31624 * 119.99535 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00484 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47339 * 180.02562 * 19 17 15 21 21 H 1.48493 * 109.47239 * 300.00542 * 19 17 15 22 22 H 1.48504 * 109.46636 * 60.00101 * 19 17 15 23 23 C 1.47017 * 108.70092 * 335.55455 * 14 13 12 24 24 S 1.75795 * 110.41285 * 0.24552 * 8 7 6 25 25 C 1.39764 * 117.99392 * 0.04039 * 6 5 4 26 26 N 1.31827 * 119.64814 * 359.97438 * 3 2 1 27 27 H 1.08997 * 109.47243 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46903 * 300.00334 * 1 2 3 29 29 H 1.09001 * 109.47085 * 59.99599 * 1 2 3 30 30 H 1.08001 * 120.19797 * 359.97044 * 4 3 2 31 31 H 1.07998 * 120.54786 * 180.02562 * 5 4 3 32 32 H 1.09001 * 111.00555 * 324.20236 * 12 10 9 33 33 H 1.08996 * 111.00773 * 88.02357 * 12 10 9 34 34 H 1.08990 * 110.49672 * 278.45593 * 13 12 10 35 35 H 1.08998 * 110.34357 * 156.05816 * 13 12 10 36 36 H 0.97005 * 119.99717 * 179.97438 * 18 17 15 37 37 H 1.08999 * 109.88360 * 120.71034 * 23 14 13 38 38 H 1.09008 * 109.87914 * 241.71497 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4357 1.2736 -0.0005 5 6 4.0593 2.4998 0.0000 6 6 3.2663 3.6692 0.0001 7 7 3.6578 4.9595 0.0001 8 6 2.7440 5.8645 0.0008 9 8 2.9775 7.1977 0.0014 10 6 1.8351 8.0563 0.0026 11 1 1.0061 7.5937 -0.5330 12 6 2.1864 9.4380 -0.6097 13 6 1.1404 10.3551 0.0771 14 7 1.0236 9.8282 1.4491 15 6 0.6077 10.5379 2.5437 16 1 0.5515 10.0574 3.5094 17 6 0.2583 11.8749 2.4125 18 7 0.3264 12.4603 1.2356 19 14 -0.3097 12.8429 3.9057 20 1 -0.6219 14.2374 3.5022 21 1 -1.5263 12.2083 4.4735 22 1 0.7670 12.8522 4.9284 23 6 1.4216 8.4129 1.4459 24 16 1.1490 5.1254 0.0085 25 6 1.8767 3.5195 0.0005 26 7 1.3205 2.3105 -0.0005 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0214 0.3662 -0.0005 31 1 5.1371 2.5675 -0.0008 32 1 3.2022 9.7344 -0.3482 33 1 2.0492 9.4325 -1.6910 34 1 0.1812 10.2914 -0.4366 35 1 1.4942 11.3859 0.0954 36 1 0.0819 13.3945 1.1437 37 1 2.2643 8.2633 2.1208 38 1 0.5823 7.7911 1.7578 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229995607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:47 Heat of formation + Delta-G solvation = 40.598053 kcal Electronic energy + Delta-G solvation = -23661.952580 eV Core-core repulsion = 20019.716705 eV Total energy + Delta-G solvation = -3642.235875 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.093 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.18331 -39.78494 -38.87317 -36.95261 -35.92048 -32.79887 -32.41301 -29.90046 -29.34686 -27.69102 -27.27589 -25.24138 -24.63502 -23.45270 -22.20243 -20.98822 -20.41213 -19.21024 -18.53225 -17.93490 -17.16134 -16.77306 -16.46436 -15.96959 -15.76831 -14.93828 -14.69944 -14.65892 -14.13917 -13.92110 -13.83665 -13.50877 -13.06633 -12.70014 -12.53181 -12.36599 -12.19297 -12.04898 -11.75867 -11.27398 -11.11419 -10.88134 -10.76938 -10.68895 -10.28313 -10.23126 -10.11056 -9.97883 -9.75105 -9.50099 -8.80752 -8.76920 -8.25931 -7.01141 -5.77851 -3.21081 0.24155 0.58520 0.65957 1.28780 2.16668 2.40206 2.72644 3.35917 3.37420 3.40149 3.41364 4.01288 4.21631 4.39250 4.44702 4.72727 4.85658 4.97150 4.97427 5.02104 5.02673 5.28552 5.33824 5.37038 5.45178 5.52196 5.56123 5.86629 6.05237 6.17823 6.23712 6.30924 6.41174 6.75484 6.83318 7.28341 7.28573 7.47998 7.53639 7.68852 8.19772 9.07759 9.67584 10.28762 11.26611 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.025756 B = 0.002671 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.881323 B =10480.445683 C =10993.109985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.303 6.303 3 C 0.337 3.663 4 C -0.164 4.164 5 C 0.002 3.998 6 C 0.042 3.958 7 N -0.487 5.487 8 C 0.321 3.679 9 O -0.250 6.250 10 C 0.064 3.936 11 H 0.084 0.916 12 C -0.133 4.133 13 C 0.152 3.848 14 N -0.598 5.598 15 C -0.227 4.227 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 0.919 3.081 20 H -0.289 1.289 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.118 3.882 24 S 0.083 5.917 25 C 0.053 3.947 26 N -0.500 5.500 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.021 0.979 35 H 0.119 0.881 36 H 0.255 0.745 37 H 0.041 0.959 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 -21.561 -5.617 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.209 6.209 3 C 0.147 3.853 4 C -0.188 4.188 5 C -0.026 4.026 6 C -0.080 4.080 7 N -0.218 5.218 8 C -0.001 4.001 9 O -0.155 6.155 10 C 0.007 3.993 11 H 0.102 0.898 12 C -0.171 4.171 13 C 0.027 3.973 14 N -0.326 5.326 15 C -0.355 4.355 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.571 5.571 19 Si 0.749 3.251 20 H -0.214 1.214 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.009 4.009 24 S 0.329 5.671 25 C -0.195 4.195 26 N -0.227 5.227 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.174 0.826 31 H 0.175 0.825 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.039 0.961 35 H 0.137 0.863 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.340 -20.793 -5.551 21.648 hybrid contribution 0.507 -0.135 0.730 0.899 sum 2.848 -20.927 -4.821 21.663 Atomic orbital electron populations 1.22917 0.76884 1.03165 1.02811 1.86269 1.23207 1.23629 1.87767 1.19615 0.89196 0.84013 0.92447 1.20890 0.91823 0.99110 1.06949 1.20918 1.00644 0.87787 0.93211 1.19541 0.91018 0.90477 1.06984 1.65795 1.33486 0.98336 1.24136 1.25438 0.89667 0.89434 0.95589 1.86047 1.35140 1.08283 1.85999 1.24243 0.84756 0.90355 0.99993 0.89840 1.23343 1.03103 0.91053 0.99629 1.22128 0.93380 0.99076 0.82709 1.44337 1.78319 1.04159 1.05784 1.19034 1.37208 0.92117 0.87132 0.90242 1.24805 1.01483 0.96732 0.97315 1.69710 1.54225 1.11866 1.21315 0.86083 0.78564 0.79031 0.81413 1.21438 1.21075 1.20990 1.21701 0.98056 0.89011 0.92150 1.85650 1.08673 0.95281 1.77476 1.23868 0.93111 0.96517 1.05988 1.66397 1.39933 0.96369 1.19997 0.88340 0.92062 0.92107 0.82616 0.82491 0.89999 0.90833 0.96117 0.86316 0.93382 0.94085 0.94866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.30 -3.03 10.48 -18.90 -0.20 -3.23 16 3 C 0.34 3.87 7.50 -17.20 -0.13 3.74 16 4 C -0.16 -1.52 9.99 -39.47 -0.39 -1.92 16 5 C 0.00 0.02 10.21 -38.67 -0.39 -0.37 16 6 C 0.04 0.60 6.96 -84.82 -0.59 0.00 16 7 N -0.49 -7.88 10.60 -11.82 -0.13 -8.00 16 8 C 0.32 5.22 8.42 51.41 0.43 5.66 16 9 O -0.25 -4.33 9.92 -17.75 -0.18 -4.51 16 10 C 0.06 1.11 3.08 -24.90 -0.08 1.04 16 11 H 0.08 1.33 6.74 -51.93 -0.35 0.98 16 12 C -0.13 -2.40 6.82 -24.46 -0.17 -2.56 16 13 C 0.15 3.48 5.91 -2.40 -0.01 3.46 16 14 N -0.60 -14.87 3.39 -169.93 -0.58 -15.45 16 15 C -0.23 -6.16 10.27 -15.06 -0.15 -6.32 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -25.88 10.08 55.49 0.56 -25.32 16 19 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.12 2.43 7.01 -3.07 -0.02 2.40 16 24 S 0.08 1.21 21.49 -107.50 -2.31 -1.10 16 25 C 0.05 0.77 7.69 -16.44 -0.13 0.64 16 26 N -0.50 -6.79 9.22 -11.85 -0.11 -6.90 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 29 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 30 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.12 3.05 5.86 -51.93 -0.30 2.75 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.04 0.87 8.06 -51.93 -0.42 0.45 16 38 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -30.81 335.63 -8.00 -38.82 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.42 Total: -2.67 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.68 Total: 6.81 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.25 Total: -55.67 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.37 Total: -7.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.31 Total: -1.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.81 -8.00 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229995607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.415 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds