Wall clock time and date at job start Tue Mar 31 2020 12:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 C 1.38139 * 119.96696 * 114.99715 * 15 14 12 17 17 C 1.39962 * 118.91746 * 180.02562 * 16 15 14 18 18 O 1.22098 * 120.51741 * 180.02562 * 17 16 15 19 19 N 1.35016 * 118.96251 * 0.02562 * 17 16 15 20 20 C 1.36222 * 119.64640 * 179.97438 * 19 17 16 21 21 C 1.35302 * 120.72409 * 180.02562 * 20 19 17 22 22 Cl 1.73597 * 119.93422 * 179.97438 * 21 20 19 23 23 C 1.40276 * 120.12981 * 359.97033 * 21 20 19 24 24 C 1.36266 * 119.55543 * 0.02562 * 23 21 20 25 25 C 1.36691 * 119.88140 * 359.97438 * 19 17 16 26 26 N 1.32360 * 119.97440 * 294.73393 * 15 14 12 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 32 32 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 33 33 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 34 34 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 35 35 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 36 36 H 1.07995 * 120.54306 * 359.97438 * 16 15 14 37 37 H 1.07991 * 119.63463 * 359.97438 * 20 19 17 38 38 H 1.07999 * 120.22390 * 179.97438 * 23 21 20 39 39 H 1.08000 * 120.26578 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 6 0.8284 -1.4301 -4.3627 17 6 1.1407 -2.2305 -5.4676 18 8 0.2538 -2.7212 -6.1483 19 7 2.4381 -2.4514 -5.7690 20 6 2.7579 -3.2286 -6.8411 21 6 4.0508 -3.4648 -7.1626 22 17 4.4351 -4.4589 -8.5328 23 6 5.0813 -2.9077 -6.3909 24 6 4.7709 -2.1289 -5.3167 25 6 3.4205 -1.8952 -4.9984 26 7 3.1159 -1.1294 -3.9520 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7082 1.1609 3.4844 31 1 3.8029 -1.3533 -0.3067 32 1 3.8209 -1.3110 -2.0862 33 1 3.9187 0.2050 -1.1591 34 1 0.4722 0.1323 -2.3564 35 1 2.0519 0.9345 -2.5281 36 1 -0.2008 -1.2378 -4.0979 37 1 1.9709 -3.6617 -7.4404 38 1 6.1138 -3.0955 -6.6459 39 1 5.5551 -1.6939 -4.7149 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129659896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:14 Heat of formation + Delta-G solvation = 38.840531 kcal Electronic energy + Delta-G solvation = -24297.124579 eV Core-core repulsion = 20652.768786 eV Total energy + Delta-G solvation = -3644.355793 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.86188 -39.75008 -39.53853 -38.19898 -37.46344 -35.18695 -34.75898 -32.93716 -31.25868 -30.75790 -29.19442 -26.93892 -26.29973 -25.58897 -24.57432 -23.57143 -21.36555 -20.25648 -19.84728 -18.76241 -18.27717 -17.87508 -17.20072 -16.98639 -16.70824 -16.05474 -15.83073 -15.70301 -15.49818 -15.16407 -14.86140 -14.32970 -14.20838 -13.91199 -13.80303 -13.51012 -13.39946 -12.96589 -12.84011 -12.80256 -12.52614 -12.46467 -12.24268 -12.08342 -12.02545 -11.86593 -11.60744 -11.55451 -11.01426 -10.77098 -10.53168 -10.40442 -8.97639 -8.91553 -8.10078 -6.21086 -1.03280 -0.76947 0.45052 0.67747 1.20722 1.42312 1.43521 1.44827 1.56061 2.42238 2.51705 2.70974 3.03447 3.18749 3.26647 3.40230 3.47800 3.63453 3.92154 4.15775 4.26388 4.40835 4.55516 4.63609 4.69241 4.72927 4.78962 4.81981 4.91182 4.99296 5.04847 5.11161 5.23164 5.30522 5.40993 5.51688 5.74660 5.79295 6.26731 6.37556 6.41616 6.57341 6.68684 6.92670 7.47664 8.96262 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.023449 B = 0.002846 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.799852 B = 9835.553223 C =10503.201426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.217 3.783 3 H -0.030 1.030 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.538 5.538 13 C 0.037 3.963 14 C 0.094 3.906 15 C 0.239 3.761 16 C -0.336 4.336 17 C 0.507 3.493 18 O -0.569 6.569 19 N -0.424 5.424 20 C 0.088 3.912 21 C -0.071 4.071 22 Cl -0.014 7.014 23 C -0.010 4.010 24 C -0.111 4.111 25 C 0.376 3.624 26 N -0.537 5.537 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.051 0.949 32 H 0.096 0.904 33 H 0.006 0.994 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.157 0.843 37 H 0.186 0.814 38 H 0.206 0.794 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.797 -7.516 -22.280 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.111 3.889 3 H -0.013 1.013 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.263 5.263 13 C -0.111 4.111 14 C -0.035 4.035 15 C 0.109 3.891 16 C -0.362 4.362 17 C 0.315 3.685 18 O -0.452 6.452 19 N -0.127 5.127 20 C -0.036 4.036 21 C -0.101 4.101 22 Cl 0.015 6.985 23 C -0.034 4.034 24 C -0.131 4.131 25 C 0.134 3.866 26 N -0.262 5.262 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.025 0.975 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.175 0.825 37 H 0.203 0.797 38 H 0.223 0.777 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 11.411 -7.813 -22.061 26.037 hybrid contribution -0.700 0.293 0.593 0.963 sum 10.711 -7.520 -21.468 25.142 Atomic orbital electron populations 1.21718 0.97228 0.99342 1.00062 1.19093 0.92691 0.90450 0.86707 1.01257 1.21430 1.31004 1.12230 0.90837 0.92341 1.25686 0.95407 0.95781 1.01821 1.70017 1.37769 1.24190 1.23991 0.85484 0.78084 0.78624 0.79295 1.19209 1.20602 1.20779 1.62101 1.11450 1.51852 1.00915 1.22433 0.86870 0.99238 1.02524 1.21132 1.01996 0.93601 0.86727 1.21365 0.87691 0.88386 0.91640 1.22585 1.02574 1.10275 1.00785 1.17171 0.80274 0.83761 0.87268 1.90948 1.44894 1.54855 1.54455 1.44266 1.10159 1.35869 1.22415 1.22176 0.98884 0.93166 0.89334 1.20418 0.92382 1.01544 0.95739 1.98439 1.93723 1.66697 1.39627 1.21886 1.01791 0.89817 0.89891 1.21373 0.91061 1.01101 0.99563 1.21380 0.90941 0.88267 0.86036 1.68806 1.20637 1.21460 1.15273 0.94612 0.91948 0.95102 0.92934 0.93020 0.88586 0.97513 0.88361 0.92969 0.82495 0.79685 0.77689 0.78068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.13 8.76 71.98 0.63 -5.50 16 2 C 0.22 11.05 2.06 44.17 0.09 11.14 16 3 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 4 C -0.52 -28.45 7.93 25.60 0.20 -28.25 16 5 H 0.06 3.22 6.39 -2.91 -0.02 3.21 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 8 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.54 -23.30 4.61 -906.01 -4.18 -27.48 16 13 C 0.04 1.49 8.95 127.69 1.14 2.63 16 14 C 0.09 3.41 5.21 85.56 0.45 3.86 16 15 C 0.24 7.77 6.22 42.46 0.26 8.03 16 16 C -0.34 -10.94 9.69 22.66 0.22 -10.73 16 17 C 0.51 16.05 7.36 84.62 0.62 16.67 16 18 O -0.57 -20.58 16.69 -5.63 -0.09 -20.68 16 19 N -0.42 -10.33 2.76 -478.53 -1.32 -11.66 16 20 C 0.09 1.59 9.84 83.33 0.82 2.41 16 21 C -0.07 -0.81 6.28 22.09 0.14 -0.67 16 22 Cl -0.01 -0.13 28.94 -2.72 -0.08 -0.21 16 23 C -0.01 -0.07 9.87 22.31 0.22 0.15 16 24 C -0.11 -1.34 9.96 22.41 0.22 -1.12 16 25 C 0.38 8.41 7.33 133.98 0.98 9.40 16 26 N -0.54 -15.29 7.49 -181.00 -1.36 -16.64 16 27 H 0.04 1.51 6.20 -2.39 -0.01 1.49 16 28 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 29 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 31 H 0.05 2.20 6.23 -2.39 -0.01 2.19 16 32 H 0.10 3.30 5.28 -2.39 -0.01 3.29 16 33 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.10 3.50 5.58 -2.39 -0.01 3.48 16 35 H 0.05 1.87 8.12 -2.38 -0.02 1.85 16 36 H 0.16 5.02 7.97 -2.91 -0.02 4.99 16 37 H 0.19 3.33 7.34 -2.91 -0.02 3.31 16 38 H 0.21 -0.24 8.06 -2.91 -0.02 -0.26 16 39 H 0.20 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -70.19 335.48 2.78 -67.41 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.09 Total: 6.97 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.45 Total: 9.11 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -6.62 Total: -108.30 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.09 Total: -20.68 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.08 Total: -0.21 kcal Total: -70.19 2.78 -67.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129659896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.247 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds