Wall clock time and date at job start Tue Mar 31 2020 12:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.46996 * 2 1 4 4 N 1.32315 * 125.89414 * 269.99762 * 3 2 1 5 5 C 1.33227 * 109.81080 * 180.02562 * 4 3 2 6 6 C 1.40657 * 131.79101 * 180.02562 * 5 4 3 7 7 C 1.36271 * 119.39920 * 179.97438 * 6 5 4 8 8 C 1.40249 * 119.60683 * 0.02562 * 7 6 5 9 9 Cl 1.73601 * 119.94998 * 179.72211 * 8 7 6 10 10 C 1.35360 * 120.10236 * 359.97438 * 8 7 6 11 11 N 1.36004 * 120.61791 * 0.02562 * 10 8 7 12 12 C 1.38277 * 132.38389 * 179.97438 * 11 10 8 13 13 C 1.41802 * 126.78837 * 359.97438 * 12 11 10 14 14 O 1.21783 * 120.00306 * 261.11081 * 13 12 11 15 15 N 1.34783 * 119.99948 * 81.09858 * 13 12 11 16 16 C 1.46497 * 119.99762 * 185.16786 * 15 13 12 17 17 H 1.09003 * 109.47417 * 35.01066 * 16 15 13 18 18 C 1.52998 * 109.47580 * 275.00495 * 16 15 13 19 19 C 1.50709 * 109.46575 * 155.00386 * 16 15 13 20 20 H 1.07991 * 120.00086 * 0.02562 * 19 16 15 21 21 C 1.37881 * 119.99672 * 180.02562 * 19 16 15 22 22 N 1.31511 * 120.00341 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 119.99705 * 180.02562 * 21 19 16 24 24 H 1.48503 * 109.47164 * 89.99929 * 23 21 19 25 25 H 1.48498 * 109.46932 * 209.99845 * 23 21 19 26 26 H 1.48491 * 109.46987 * 329.99539 * 23 21 19 27 27 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47346 * 300.00342 * 1 2 3 29 29 H 1.09003 * 109.46983 * 59.99716 * 1 2 3 30 30 H 1.08997 * 109.47147 * 240.00274 * 2 1 3 31 31 H 1.08995 * 109.46787 * 119.99674 * 2 1 3 32 32 H 1.07999 * 120.29528 * 0.02562 * 6 5 4 33 33 H 1.07997 * 120.19520 * 180.02562 * 7 6 5 34 34 H 1.07998 * 119.69549 * 179.97438 * 10 8 7 35 35 H 0.97000 * 119.99817 * 5.18015 * 15 13 12 36 36 H 1.09004 * 109.47113 * 180.02562 * 18 16 15 37 37 H 1.09004 * 109.46723 * 299.99883 * 18 16 15 38 38 H 1.08998 * 109.46989 * 59.99946 * 18 16 15 39 39 H 0.96997 * 120.00573 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2909 2.1522 -1.0719 5 6 2.7181 3.3590 -0.7028 6 6 3.1150 4.4821 -1.4508 7 6 3.5144 5.6114 -0.8011 8 6 3.5245 5.6372 0.6011 9 17 4.0386 7.0687 1.4380 10 6 3.1389 4.5460 1.3030 11 7 2.7391 3.4154 0.6614 12 6 2.3051 2.1860 1.1223 13 6 2.1658 1.7875 2.4760 14 8 3.0364 1.1225 3.0077 15 7 1.0698 2.1450 3.1744 16 6 0.9767 1.8314 4.6024 17 1 1.9645 1.9091 5.0566 18 6 0.4449 0.4077 4.7784 19 6 0.0390 2.8041 5.2701 20 1 -0.4399 3.5781 4.6888 21 6 -0.2074 2.7059 6.6231 22 7 0.3755 1.7631 7.3309 23 14 -1.3702 3.9111 7.4506 24 1 -2.7529 3.3709 7.4118 25 1 -0.9555 4.1089 8.8627 26 1 -1.3265 5.2116 6.7352 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.1024 4.4500 -2.5302 33 1 3.8214 6.4814 -1.3626 34 1 3.1497 4.5729 2.3826 35 1 0.3427 2.6097 2.7314 36 1 0.3752 0.1746 5.8409 37 1 -0.5430 0.3302 4.3242 38 1 1.1231 -0.2958 4.2954 39 1 0.2019 1.6938 8.2827 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292339768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:18 Heat of formation + Delta-G solvation = 36.468157 kcal Electronic energy + Delta-G solvation = -24682.141636 eV Core-core repulsion = 21037.682969 eV Total energy + Delta-G solvation = -3644.458667 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.02547 -39.02340 -38.01290 -36.60066 -34.91401 -34.10727 -33.28536 -32.44571 -29.85699 -29.72544 -28.25225 -25.33679 -24.65705 -24.24467 -22.99153 -21.53336 -20.49031 -19.72332 -18.48777 -17.29952 -16.88208 -16.37464 -16.23061 -15.60018 -15.31387 -15.09223 -14.44223 -14.20938 -13.88648 -13.69674 -13.32579 -13.24700 -13.02495 -12.55268 -12.48770 -12.39310 -11.77771 -11.51799 -11.35302 -11.32945 -11.19576 -11.04148 -10.98665 -10.92393 -10.81380 -10.43608 -10.31179 -10.29129 -9.43118 -9.13751 -8.76639 -8.64360 -8.09563 -7.96213 -6.19960 -4.30165 0.38958 0.80440 1.43842 2.31925 2.48397 3.17740 3.19896 3.22592 3.26857 3.28514 3.88147 4.05474 4.19713 4.32110 4.39812 4.70586 4.85265 5.02497 5.12495 5.27097 5.37123 5.42798 5.51875 5.61439 5.63629 5.68312 5.99163 6.06021 6.16633 6.26695 6.46144 6.73735 6.77915 6.88796 7.05779 7.28009 7.43041 7.59273 7.66888 7.80620 8.05551 8.46798 8.63926 8.88980 9.37414 10.85784 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.010354 B = 0.004763 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.505788 B = 5877.266376 C = 7901.350926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.124 3.876 4 N -0.482 5.482 5 C 0.223 3.777 6 C -0.065 4.065 7 C -0.094 4.094 8 C -0.062 4.062 9 Cl -0.034 7.034 10 C 0.082 3.918 11 N -0.328 5.328 12 C -0.102 4.102 13 C 0.579 3.421 14 O -0.534 6.534 15 N -0.692 5.692 16 C 0.264 3.736 17 H 0.049 0.951 18 C -0.147 4.147 19 C -0.536 4.536 20 H 0.061 0.939 21 C 0.069 3.931 22 N -0.881 5.881 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.274 1.274 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.390 0.610 36 H 0.091 0.909 37 H 0.028 0.972 38 H 0.018 0.982 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.512 6.248 -16.280 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.013 4.013 4 N -0.202 5.202 5 C -0.017 4.017 6 C -0.085 4.085 7 C -0.118 4.118 8 C -0.092 4.092 9 Cl -0.005 7.005 10 C -0.043 4.043 11 N -0.001 5.001 12 C -0.216 4.216 13 C 0.361 3.639 14 O -0.410 6.410 15 N -0.340 5.340 16 C 0.163 3.837 17 H 0.067 0.933 18 C -0.206 4.206 19 C -0.575 4.575 20 H 0.079 0.921 21 C -0.135 4.135 22 N -0.518 5.518 23 Si 0.729 3.271 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.180 0.820 33 H 0.171 0.829 34 H 0.193 0.807 35 H 0.223 0.777 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.094 5.538 -16.300 17.695 hybrid contribution -0.780 1.392 1.269 2.039 sum 3.314 6.930 -15.030 16.880 Atomic orbital electron populations 1.21716 0.93759 1.02314 1.02455 1.20066 0.96522 0.88163 1.04015 1.21345 0.97427 0.96648 0.85922 1.70347 1.20127 1.00501 1.29184 1.20964 1.04743 0.95970 0.80060 1.20220 0.98971 0.88578 1.00731 1.20926 1.00144 0.99217 0.91555 1.20022 1.06552 0.89783 0.92869 1.98407 1.89004 1.35275 1.77795 1.21451 0.98863 0.84078 0.99904 1.42438 1.39849 1.09100 1.08688 1.20426 1.18171 0.85800 0.97239 1.15622 0.83713 0.81672 0.82913 1.90851 1.41924 1.38849 1.69422 1.46723 1.17965 1.56326 1.12946 1.18854 0.98109 0.93262 0.73477 0.93336 1.22068 0.97618 0.96996 1.03891 1.21167 1.27903 1.14646 0.93760 0.92106 1.24867 0.95915 0.95671 0.97039 1.69892 1.42339 1.31964 1.07630 0.86448 0.80831 0.81106 0.78746 1.20441 1.20990 1.19868 0.91695 0.92151 0.92378 0.89620 0.89520 0.82035 0.82863 0.80744 0.77693 0.89043 0.95304 0.96326 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 37.16 0.37 -1.42 16 2 C -0.05 -0.68 6.28 -27.88 -0.18 -0.86 16 3 C 0.12 2.02 6.41 -82.27 -0.53 1.49 16 4 N -0.48 -7.58 11.25 -8.51 -0.10 -7.68 16 5 C 0.22 3.21 7.77 -156.06 -1.21 2.00 16 6 C -0.06 -0.66 10.10 -39.38 -0.40 -1.06 16 7 C -0.09 -0.85 9.86 -39.53 -0.39 -1.24 16 8 C -0.06 -0.70 6.28 -39.85 -0.25 -0.95 16 9 Cl -0.03 -0.34 28.95 -51.86 -1.50 -1.85 16 10 C 0.08 1.13 10.58 -16.73 -0.18 0.96 16 11 N -0.33 -5.13 2.96 -60.11 -0.18 -5.31 16 12 C -0.10 -1.80 6.52 -83.48 -0.54 -2.34 16 13 C 0.58 11.84 6.87 -14.89 -0.10 11.74 16 14 O -0.53 -12.87 16.76 5.11 0.09 -12.78 16 15 N -0.69 -14.26 5.06 -57.77 -0.29 -14.55 16 16 C 0.26 6.50 2.52 -69.08 -0.17 6.33 16 17 H 0.05 1.37 7.66 -51.93 -0.40 0.97 16 18 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 19 C -0.54 -13.76 8.73 -34.43 -0.30 -14.06 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 22 N -0.88 -24.15 11.32 55.43 0.63 -23.52 16 23 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.29 7.93 -51.93 -0.41 0.88 16 32 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.18 2.48 8.06 -52.49 -0.42 2.05 16 35 H 0.39 7.28 8.50 -40.82 -0.35 6.93 16 36 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.02 0.42 8.09 -51.93 -0.42 0.00 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 352.71 15.07 5.32 5.32 Total: -1.00 -30.44 352.71 -9.51 -39.94 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.82 Total: 6.19 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.63 Total: -0.92 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.06 Total: -51.06 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.78 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.85 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.44 -9.51 -39.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292339768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.412 kcal (2) G-P(sol) polarization free energy of solvation -30.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds