Wall clock time and date at job start Tue Mar 31 2020 12:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47007 * 41.52661 * 3 2 1 5 5 C 1.36942 * 119.99609 * 273.01332 * 4 3 2 6 6 H 1.07996 * 119.99618 * 187.51745 * 5 4 3 7 7 C 1.38809 * 120.00165 * 7.51010 * 5 4 3 8 8 N 1.31621 * 119.99995 * 27.07194 * 7 5 4 9 9 Si 1.86803 * 120.00124 * 207.06850 * 7 5 4 10 10 H 1.48492 * 109.46999 * 60.00309 * 9 7 5 11 11 H 1.48502 * 109.46852 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46984 * 300.00018 * 9 7 5 13 13 S 1.65593 * 120.00231 * 93.01592 * 4 3 2 14 14 O 1.42104 * 104.27828 * 333.92485 * 13 4 3 15 15 O 1.42104 * 104.27539 * 206.07179 * 13 4 3 16 16 C 1.81397 * 104.45265 * 89.99970 * 13 4 3 17 17 C 1.52998 * 109.47273 * 180.02562 * 16 13 4 18 18 H 1.08996 * 109.47252 * 305.00182 * 17 16 13 19 19 C 1.53007 * 109.47081 * 64.99713 * 17 16 13 20 20 C 1.52998 * 109.47081 * 179.97438 * 19 17 16 21 21 C 1.53008 * 109.47041 * 300.00140 * 20 19 17 22 22 C 1.52996 * 109.46964 * 59.99871 * 21 20 19 23 23 C 1.52997 * 109.47072 * 184.99551 * 17 16 13 24 24 F 1.39895 * 109.47669 * 300.00049 * 23 17 16 25 25 F 1.39900 * 109.47184 * 60.00395 * 23 17 16 26 26 H 4.40640 * 5.51387 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47305 * 281.52602 * 3 2 1 28 28 H 1.08999 * 109.47202 * 161.52337 * 3 2 1 29 29 H 0.97000 * 120.00097 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.47534 * 59.99511 * 16 13 4 31 31 H 1.09009 * 109.46996 * 299.99862 * 16 13 4 32 32 H 1.08999 * 109.47052 * 300.00302 * 19 17 16 33 33 H 1.08999 * 109.47192 * 60.00162 * 19 17 16 34 34 H 1.08996 * 109.47303 * 179.97438 * 20 19 17 35 35 H 1.08998 * 109.47395 * 59.99702 * 20 19 17 36 36 H 1.08999 * 109.47146 * 299.99785 * 21 20 19 37 37 H 1.09004 * 109.46985 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46719 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47316 * 60.00533 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -1.0332 -0.9157 5 6 3.3047 -2.3171 -0.4708 6 1 3.7777 -3.0508 -1.1067 7 6 2.8693 -2.6755 0.7976 8 7 1.8706 -2.0269 1.3582 9 14 3.7006 -4.0784 1.7088 10 1 5.1387 -3.7614 1.8996 11 1 3.0535 -4.2608 3.0329 12 1 3.5699 -5.3285 0.9181 13 16 3.4817 -0.6493 -2.4887 14 8 2.6584 0.4756 -2.7647 15 8 3.3122 -1.8716 -3.1934 16 6 5.2302 -0.1671 -2.4620 17 6 5.6754 0.2156 -3.8748 18 1 5.4616 -0.6061 -4.5583 19 6 4.9177 1.4655 -4.3273 20 6 5.3634 1.8486 -5.7399 21 6 6.8664 2.1352 -5.7404 22 6 7.6240 0.8854 -5.2879 23 6 7.1783 0.5021 -3.8759 24 9 7.4528 1.5568 -2.9988 25 9 7.8712 -0.6408 -3.4623 26 1 -1.0499 -0.0001 -0.0003 27 1 3.0094 -0.2045 1.0069 28 1 3.0089 0.9755 -0.3257 29 1 1.5660 -2.2776 2.2444 30 1 5.8321 -1.0026 -2.1048 31 1 5.3617 0.6861 -1.7964 32 1 3.8470 1.2615 -4.3265 33 1 5.1315 2.2873 -3.6439 34 1 4.8233 2.7387 -6.0624 35 1 5.1500 1.0270 -6.4236 36 1 7.0798 2.9569 -5.0567 37 1 7.1840 2.4077 -6.7469 38 1 8.6947 1.0894 -5.2887 39 1 7.4106 0.0638 -5.9716 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296268412.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:13 Heat of formation + Delta-G solvation = -131.437177 kcal Electronic energy + Delta-G solvation = -26605.489669 eV Core-core repulsion = 22505.104600 eV Total energy + Delta-G solvation = -4100.385069 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.100 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.03280 -47.99675 -39.02876 -38.07628 -37.88997 -36.82267 -34.14224 -33.57448 -32.81384 -31.11581 -28.23608 -27.91125 -25.61473 -23.97324 -22.94448 -21.08201 -20.31779 -19.69919 -19.04717 -18.35384 -18.12686 -17.74365 -17.55131 -16.78313 -16.75820 -16.22500 -15.70812 -15.50767 -15.22866 -14.99962 -14.89005 -14.52700 -14.32867 -14.22922 -14.17957 -13.69489 -13.51125 -13.47896 -13.13128 -13.11267 -12.90244 -12.77228 -12.65067 -12.58661 -12.31936 -12.28347 -11.98635 -11.97493 -11.61586 -11.58968 -11.39788 -10.99055 -10.81798 -10.49721 -9.97880 -8.09719 -5.74382 -0.59185 1.47958 1.50112 1.56873 1.83505 2.41599 2.51791 2.65335 2.71724 2.89558 2.98157 3.09697 3.17483 3.30085 3.37912 3.74729 3.83446 3.97870 4.03108 4.06036 4.15873 4.24691 4.31633 4.41755 4.58879 4.65840 4.74229 4.88632 4.97342 5.00741 5.03883 5.20226 5.20444 5.28869 5.40428 5.55090 5.69557 6.47245 7.05337 7.29576 7.39798 8.87207 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.017809 B = 0.004886 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.874447 B = 5729.118245 C = 6643.189427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.133 4.133 3 C 0.252 3.748 4 N -0.867 5.867 5 C -0.354 4.354 6 H 0.101 0.899 7 C 0.004 3.996 8 N -0.880 5.880 9 Si 0.962 3.038 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.278 1.278 13 S 2.605 3.395 14 O -0.981 6.981 15 O -0.996 6.996 16 C -0.626 4.626 17 C -0.119 4.119 18 H 0.114 0.886 19 C -0.151 4.151 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.156 4.156 23 C 0.296 3.704 24 F -0.203 7.203 25 F -0.211 7.211 26 H 0.227 0.773 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.263 0.737 30 H 0.140 0.860 31 H 0.148 0.852 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.231 9.239 -11.183 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.135 4.135 3 C 0.126 3.874 4 N -0.697 5.697 5 C -0.483 4.483 6 H 0.118 0.882 7 C -0.199 4.199 8 N -0.518 5.518 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.204 1.204 13 S 2.702 3.298 14 O -0.971 6.971 15 O -0.987 6.987 16 C -0.756 4.756 17 C -0.139 4.139 18 H 0.132 0.868 19 C -0.189 4.189 20 C -0.161 4.161 21 C -0.153 4.153 22 C -0.194 4.194 23 C 0.259 3.741 24 F -0.184 7.184 25 F -0.192 7.192 26 H 0.243 0.757 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.579 9.185 -11.707 18.258 hybrid contribution 0.398 -1.091 1.588 1.968 sum 10.978 8.094 -10.119 16.983 Atomic orbital electron populations 1.25026 0.96465 1.04414 1.03433 1.23683 0.95481 0.96631 0.97730 1.17941 0.84356 0.88836 0.96256 1.53018 1.75169 1.13927 1.27583 1.19245 1.41116 0.86804 1.01104 0.88182 1.25684 0.95395 1.00813 0.98044 1.70337 1.21598 1.43649 1.16199 0.85493 0.79321 0.78986 0.77529 1.18987 1.21119 1.20353 1.04755 0.78894 0.73116 0.73084 1.93492 1.65464 1.54123 1.84062 1.93464 1.86505 1.45711 1.72992 1.30724 1.26647 1.13358 1.04850 1.22032 0.94808 1.02365 0.94716 0.86761 1.22132 1.00541 0.96018 1.00167 1.21660 0.96557 1.03474 0.94370 1.21573 0.93923 0.95976 1.03835 1.22633 1.03384 1.02256 0.91140 1.21223 0.90270 0.72908 0.89681 1.92956 1.94804 1.57980 1.72670 1.92986 1.81496 1.52454 1.92264 0.75658 0.88786 0.89287 0.92664 0.84206 0.83367 0.90297 0.89637 0.89082 0.90261 0.91009 0.87596 0.87870 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.68 19.25 74.32 1.43 -11.25 16 2 C -0.13 -6.58 11.12 31.13 0.35 -6.24 16 3 C 0.25 11.62 5.03 84.57 0.43 12.04 16 4 N -0.87 -41.80 2.81 -352.50 -0.99 -42.79 16 5 C -0.35 -18.64 9.28 84.03 0.78 -17.86 16 6 H 0.10 5.28 7.40 -2.91 -0.02 5.26 16 7 C 0.00 0.22 4.86 84.86 0.41 0.63 16 8 N -0.88 -47.32 9.10 21.65 0.20 -47.13 16 9 Si 0.96 41.51 29.63 68.60 2.03 43.54 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 12 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 13 S 2.61 109.46 4.98 -56.49 -0.28 109.18 16 14 O -0.98 -42.64 14.70 -127.65 -1.88 -44.52 16 15 O -1.00 -48.68 16.88 -127.65 -2.16 -50.84 16 16 C -0.63 -19.82 5.38 71.98 0.39 -19.43 16 17 C -0.12 -3.13 1.84 -10.79 -0.02 -3.15 16 18 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 19 C -0.15 -3.61 4.77 30.60 0.15 -3.46 16 20 C -0.12 -1.99 5.92 30.60 0.18 -1.81 16 21 C -0.12 -1.50 5.80 30.60 0.18 -1.32 16 22 C -0.16 -2.42 5.45 30.57 0.17 -2.25 16 23 C 0.30 7.04 1.63 30.57 0.05 7.09 16 24 F -0.20 -5.25 15.59 44.97 0.70 -4.55 16 25 F -0.21 -5.84 16.46 44.97 0.74 -5.10 16 26 H 0.23 8.40 7.80 -4.42 -0.03 8.37 16 27 H 0.09 4.47 6.52 -2.39 -0.02 4.46 16 28 H 0.09 3.43 7.68 -2.39 -0.02 3.41 16 29 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.14 4.43 7.66 -2.39 -0.02 4.41 16 31 H 0.15 4.19 7.94 -2.39 -0.02 4.17 16 32 H 0.08 2.22 5.61 -2.39 -0.01 2.21 16 33 H 0.08 1.97 7.80 -2.39 -0.02 1.96 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.00 7.80 -2.39 -0.02 0.98 16 37 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.36 335.18 3.90 -65.46 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 1.06 Total: 23.76 kcal Atomic # 6 Polarization: -51.49 SS G_CDS: 4.48 Total: -47.01 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -0.79 Total: -89.91 kcal Atomic # 8 Polarization: -91.33 SS G_CDS: -4.03 Total: -95.36 kcal Atomic # 9 Polarization: -11.09 SS G_CDS: 1.44 Total: -9.65 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 109.46 SS G_CDS: -0.28 Total: 109.18 kcal Total: -69.36 3.90 -65.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296268412.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.980 kcal (2) G-P(sol) polarization free energy of solvation -69.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds