Wall clock time and date at job start Tue Mar 31 2020 12:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.52996 * 109.46972 * 239.99860 * 2 1 3 5 5 C 1.50703 * 109.47130 * 60.00278 * 4 2 1 6 6 H 1.07994 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99896 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99699 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47182 * 90.00248 * 9 7 5 11 11 H 1.48498 * 109.47091 * 210.00192 * 9 7 5 12 12 H 1.48505 * 109.47095 * 329.99725 * 9 7 5 13 13 C 1.52997 * 109.46817 * 120.00127 * 2 1 3 14 14 N 1.46506 * 109.47289 * 299.99814 * 13 2 1 15 15 C 1.34774 * 120.00072 * 180.02562 * 14 13 2 16 16 O 1.21522 * 120.00149 * 0.02562 * 15 14 13 17 17 C 1.48136 * 119.99728 * 179.97438 * 15 14 13 18 18 N 1.32812 * 119.57520 * 359.73286 * 17 15 14 19 19 C 1.31312 * 121.81298 * 179.70590 * 18 17 15 20 20 C 1.39926 * 120.74139 * 0.56349 * 19 18 17 21 21 C 1.43202 * 120.45896 * 179.74438 * 20 19 18 22 22 N 9.74189 * 78.26685 * 72.92967 * 2 1 3 23 23 C 1.39873 * 119.08505 * 359.72401 * 20 19 18 24 24 C 1.38577 * 118.33890 * 0.02562 * 23 20 19 25 25 Cl 1.73597 * 120.41304 * 179.97438 * 24 23 20 26 26 H 1.09002 * 109.47070 * 300.00053 * 1 2 3 27 27 H 1.09000 * 109.46986 * 59.99882 * 1 2 3 28 28 H 1.08996 * 109.47407 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47624 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47140 * 300.00024 * 3 2 1 31 31 H 1.09002 * 109.46777 * 59.99451 * 3 2 1 32 32 H 1.09001 * 109.46997 * 180.02562 * 4 2 1 33 33 H 1.09004 * 109.47298 * 300.00176 * 4 2 1 34 34 H 0.97007 * 119.99539 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47289 * 179.97438 * 13 2 1 36 36 H 1.09004 * 109.47261 * 59.99941 * 13 2 1 37 37 H 0.97001 * 119.99251 * 0.02562 * 14 13 2 38 38 H 1.07998 * 119.63192 * 180.28632 * 19 18 17 39 39 H 1.07999 * 120.83172 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9172 0.8675 -2.3806 7 6 1.8712 -0.4817 -3.7320 8 7 2.6272 -1.5510 -3.8525 9 14 1.2492 0.3993 -5.2572 10 1 2.2276 1.4409 -5.6608 11 1 1.0845 -0.5795 -6.3617 12 1 -0.0591 1.0369 -4.9616 13 6 2.0399 -0.7213 1.2492 14 7 1.5516 -0.0307 2.4455 15 6 1.8776 -0.4909 3.6695 16 8 2.5769 -1.4784 3.7811 17 6 1.3842 0.2078 4.8790 18 7 0.6257 1.2900 4.7473 19 6 0.1600 1.9399 5.7890 20 6 0.4598 1.5168 7.0886 21 6 -0.0468 2.2333 8.2203 22 7 -0.4510 2.7999 9.1181 23 6 1.2607 0.3841 7.2671 24 6 1.7273 -0.2757 6.1414 25 17 2.7259 -1.6868 6.3005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 2.8616 -1.8824 -4.7336 35 1 3.1299 -0.7217 1.2491 36 1 1.6766 -1.7490 1.2492 37 1 0.9937 0.7578 2.3564 38 1 -0.4576 2.8134 5.6411 39 1 1.5093 0.0324 8.2576 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360427457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:42 Heat of formation + Delta-G solvation = 0.703737 kcal Electronic energy + Delta-G solvation = -23564.221974 eV Core-core repulsion = 19918.212445 eV Total energy + Delta-G solvation = -3646.009529 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97851 -40.41618 -38.62185 -37.85612 -37.63377 -35.27504 -34.26088 -33.62364 -32.65383 -29.13696 -28.11893 -27.90472 -26.44290 -25.01727 -24.66955 -22.02058 -20.48294 -20.20630 -18.95018 -18.37418 -18.22295 -16.78517 -16.72271 -16.42805 -16.32330 -15.96022 -15.75858 -15.06052 -14.90639 -14.62883 -14.61375 -14.35922 -14.27776 -14.22657 -13.89237 -13.68733 -13.65577 -13.13720 -12.83893 -12.70414 -12.53885 -12.49292 -12.27995 -12.18039 -11.94234 -11.48398 -11.41799 -11.06604 -10.99736 -10.82995 -10.54514 -10.47299 -10.31996 -9.97050 -8.10390 -6.17348 -1.12611 -0.24757 0.83499 1.25022 1.45273 1.45570 1.47447 1.55705 1.93961 2.02696 2.45601 2.48288 2.60753 2.93189 3.24367 3.36243 3.47071 3.69160 3.94765 4.02229 4.14026 4.28448 4.36107 4.60817 4.74865 4.78267 4.83290 5.00370 5.02780 5.14644 5.18462 5.41188 5.50061 5.55951 5.58675 5.62055 5.85559 5.94530 6.14983 6.29606 6.35800 6.58223 6.97949 7.12882 7.50071 9.01957 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.022543 B = 0.002621 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.789079 B =10679.699227 C =11725.122261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.040 3.960 5 C -0.511 4.511 6 H 0.072 0.928 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.956 3.044 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.260 1.260 13 C 0.140 3.860 14 N -0.688 5.688 15 C 0.550 3.450 16 O -0.541 6.541 17 C 0.111 3.889 18 N -0.449 5.449 19 C 0.169 3.831 20 C -0.034 4.034 21 C 0.284 3.716 22 N -0.428 5.428 23 C -0.008 4.008 24 C -0.053 4.053 25 Cl -0.017 7.017 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.068 0.932 32 H -0.012 1.012 33 H -0.012 1.012 34 H 0.259 0.741 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.418 0.582 38 H 0.216 0.784 39 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 7.682 23.780 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.002 3.998 5 C -0.549 4.549 6 H 0.090 0.910 7 C -0.202 4.202 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.184 1.184 13 C 0.016 3.984 14 N -0.340 5.340 15 C 0.334 3.666 16 O -0.418 6.418 17 C -0.027 4.027 18 N -0.159 5.159 19 C 0.006 3.994 20 C -0.040 4.040 21 C -0.032 4.032 22 N -0.104 5.104 23 C -0.037 4.037 24 C -0.084 4.084 25 Cl 0.012 6.988 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.006 0.994 33 H 0.006 0.994 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.257 0.743 38 H 0.233 0.767 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.588 7.877 24.233 26.086 hybrid contribution 0.386 -0.524 -0.813 1.041 sum -5.201 7.353 23.420 25.092 Atomic orbital electron populations 1.21702 0.93675 1.01010 1.01584 1.20701 0.96654 0.96277 0.92812 1.21703 0.99961 0.94716 1.01606 1.18976 0.94386 0.94258 0.92174 1.21597 1.30256 1.11972 0.91068 0.90974 1.25926 0.95779 0.95884 1.02644 1.70119 1.38877 1.24946 1.23987 0.85573 0.79184 0.78109 0.78940 1.20253 1.21725 1.18366 1.21332 0.98235 0.95553 0.83231 1.45868 1.51942 1.31871 1.04360 1.18134 0.80995 0.84059 0.83445 1.90896 1.38155 1.26300 1.86466 1.21090 0.95950 0.93364 0.92326 1.67868 1.08402 1.05206 1.34447 1.23667 0.93419 0.97797 0.84531 1.16938 1.01148 0.95814 0.90097 1.24954 0.93083 0.92945 0.92253 1.81391 1.09021 1.09341 1.10599 1.21842 0.91132 0.90938 0.99744 1.21835 0.98755 0.93745 0.94033 1.98467 1.66146 1.36454 1.97686 0.91319 0.92633 0.94293 0.94302 0.92591 0.91323 0.99384 0.99366 0.93261 0.92764 0.92762 0.74262 0.76714 0.79380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.05 71.98 0.58 -3.41 16 2 C -0.06 -2.32 0.54 -52.18 -0.03 -2.35 16 3 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 4 C 0.04 1.96 4.04 29.85 0.12 2.08 16 5 C -0.51 -26.83 7.65 25.60 0.20 -26.63 16 6 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -56.36 13.29 21.45 0.28 -56.08 16 9 Si 0.96 43.09 29.54 68.60 2.03 45.11 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 C 0.14 4.71 4.56 86.38 0.39 5.11 16 14 N -0.69 -18.30 4.95 -465.67 -2.30 -20.61 16 15 C 0.55 14.81 7.80 86.87 0.68 15.49 16 16 O -0.54 -17.92 13.91 -3.78 -0.05 -17.97 16 17 C 0.11 2.16 6.75 41.92 0.28 2.44 16 18 N -0.45 -6.55 9.51 -183.81 -1.75 -8.30 16 19 C 0.17 1.31 10.91 85.18 0.93 2.24 16 20 C -0.03 -0.26 5.75 -21.23 -0.12 -0.38 16 21 C 0.28 2.86 15.36 88.33 1.36 4.22 16 22 N -0.43 -6.77 18.54 19.01 0.35 -6.42 16 23 C -0.01 -0.07 9.70 22.75 0.22 0.15 16 24 C -0.05 -0.86 6.36 22.65 0.14 -0.72 16 25 Cl -0.02 -0.35 26.00 -2.72 -0.07 -0.42 16 26 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 27 H 0.05 1.95 6.62 -2.39 -0.02 1.93 16 28 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.96 6.62 -2.39 -0.02 1.94 16 31 H 0.07 1.71 6.86 -2.39 -0.02 1.70 16 32 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 33 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 34 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.42 9.37 5.48 -92.71 -0.51 8.87 16 38 H 0.22 0.16 8.06 -2.91 -0.02 0.14 16 39 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -69.18 349.44 4.88 -64.30 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 0.60 Total: 5.40 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.79 Total: -5.02 kcal Atomic # 7 Polarization: -87.99 SS G_CDS: -3.42 Total: -91.41 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.05 Total: -17.97 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.07 Total: -0.42 kcal Total: -69.18 4.88 -64.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360427457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.002 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds