Wall clock time and date at job start Tue Mar 31 2020 12:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47392 * 2 1 4 4 C 1.47193 * 109.47339 * 120.00655 * 2 1 3 5 5 N 2.60801 * 109.47325 * 120.00629 * 2 1 3 6 6 C 1.53005 * 109.46871 * 240.00661 * 2 1 3 7 7 N 1.46497 * 109.47229 * 64.99779 * 6 2 1 8 8 C 1.46506 * 119.99969 * 269.99758 * 7 6 2 9 9 C 1.34770 * 120.00112 * 90.00478 * 7 6 2 10 10 O 1.21582 * 119.99714 * 359.97438 * 9 7 6 11 11 N 1.34776 * 120.00152 * 180.02562 * 9 7 6 12 12 C 1.39271 * 119.99935 * 174.10138 * 11 9 7 13 13 C 1.39464 * 119.84024 * 325.92639 * 12 11 9 14 14 C 1.36372 * 120.18238 * 180.28718 * 13 12 11 15 15 C 1.40895 * 119.84901 * 359.97438 * 14 13 12 16 16 C 1.41151 * 120.15970 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99748 * 34.22550 * 16 15 14 18 18 C 1.39886 * 120.00287 * 214.21449 * 16 15 14 19 19 N 1.30885 * 119.99919 * 5.56828 * 18 16 15 20 20 Si 1.86800 * 120.00177 * 185.56859 * 18 16 15 21 21 H 1.48496 * 109.47195 * 89.99881 * 20 18 16 22 22 H 1.48500 * 109.47076 * 210.00431 * 20 18 16 23 23 H 1.48504 * 109.46975 * 330.00031 * 20 18 16 24 24 C 1.40841 * 119.68344 * 0.02562 * 15 14 13 25 25 C 1.36475 * 119.81575 * 359.97438 * 24 15 14 26 26 Cl 1.73603 * 119.92456 * 179.97438 * 25 24 15 27 27 H 1.09002 * 109.46696 * 299.99380 * 1 2 3 28 28 H 1.08993 * 109.47234 * 59.99858 * 1 2 3 29 29 H 1.09002 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46779 * 304.99878 * 6 2 1 31 31 H 1.08998 * 109.46867 * 185.00214 * 6 2 1 32 32 H 1.08996 * 109.47234 * 270.00477 * 8 7 6 33 33 H 1.09003 * 109.46867 * 30.00270 * 8 7 6 34 34 H 1.08995 * 109.47021 * 150.00133 * 8 7 6 35 35 H 0.97006 * 119.99902 * 354.09434 * 11 9 7 36 36 H 1.08000 * 119.91039 * 0.27958 * 13 12 11 37 37 H 1.07999 * 120.07840 * 179.97438 * 14 13 12 38 38 H 0.96997 * 119.99875 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.09282 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 1.2017 5 7 2.3995 -1.2296 2.1293 6 6 2.0400 -0.7211 -1.2494 7 7 1.6524 0.0355 -2.4424 8 6 0.3744 -0.2421 -3.1028 9 6 2.4714 0.9870 -2.9325 10 8 3.5318 1.2177 -2.3842 11 7 2.1146 1.6835 -4.0298 12 6 2.9002 2.7481 -4.4648 13 6 3.5636 3.5469 -3.5338 14 6 4.3299 4.5946 -3.9518 15 6 4.4514 4.8694 -5.3283 16 6 5.2433 5.9518 -5.7682 17 1 6.1402 6.2189 -5.2290 18 6 4.8666 6.6785 -6.9027 19 7 3.7257 6.4262 -7.4924 20 14 5.9919 8.0089 -7.5759 21 1 6.9212 7.4147 -8.5702 22 1 5.1758 9.0635 -8.2293 23 1 6.7733 8.6060 -6.4632 24 6 3.7788 4.0588 -6.2633 25 6 3.0154 3.0137 -5.8303 26 17 2.1846 2.0132 -6.9803 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6053 -1.7197 -1.2953 31 1 3.1263 -0.7994 -1.2057 32 1 0.5169 -1.0124 -3.8607 33 1 -0.3485 -0.5885 -2.3642 34 1 0.0041 0.6678 -3.5748 35 1 1.3106 1.4433 -4.5166 36 1 3.4701 3.3352 -2.4789 37 1 4.8426 5.2123 -3.2293 38 1 3.4644 6.9304 -8.2788 39 1 3.8676 4.2632 -7.3201 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455701110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:47 Heat of formation + Delta-G solvation = 0.015835 kcal Electronic energy + Delta-G solvation = -23983.343184 eV Core-core repulsion = 20337.303825 eV Total energy + Delta-G solvation = -3646.039358 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64365 -39.65423 -38.42129 -37.19105 -36.82362 -36.09647 -34.89247 -33.70719 -31.27004 -30.73064 -28.82436 -27.33559 -26.07773 -24.47796 -23.39373 -22.54806 -20.76235 -19.43934 -19.05666 -18.68989 -18.12790 -17.15286 -16.74839 -16.27184 -16.12907 -15.94248 -15.47443 -14.95818 -14.78252 -14.67667 -14.36026 -14.16132 -13.98586 -13.83454 -13.77220 -13.54174 -13.35478 -13.11843 -12.97140 -12.82717 -12.64534 -12.34140 -12.23139 -12.09170 -12.00602 -11.88240 -11.84140 -11.52573 -11.22540 -11.02968 -10.60981 -9.69688 -9.36399 -8.74059 -8.55294 -6.31952 0.69800 0.99142 1.40506 1.43719 1.48345 1.54784 1.56382 1.74886 1.81842 2.20485 2.26145 2.77061 2.88594 3.17500 3.60526 3.86752 3.94800 4.24423 4.32824 4.35888 4.57466 4.67672 4.74093 4.83948 4.90878 4.95401 4.97855 5.03130 5.10517 5.24381 5.31236 5.35801 5.48446 5.53803 5.67940 5.90700 5.98152 6.09974 6.27137 6.51986 6.56034 6.90136 6.94145 6.98655 7.62246 8.41033 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.003085 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.219138 B = 9074.539469 C =10071.162091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.009 4.009 3 H 0.107 0.893 4 C 0.243 3.757 5 N -0.487 5.487 6 C 0.143 3.857 7 N -0.619 5.619 8 C 0.060 3.940 9 C 0.696 3.304 10 O -0.615 6.615 11 N -0.659 5.659 12 C 0.050 3.950 13 C -0.078 4.078 14 C -0.210 4.210 15 C 0.083 3.917 16 C -0.494 4.494 17 H 0.078 0.922 18 C 0.034 3.966 19 N -0.833 5.833 20 Si 0.983 3.017 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.261 1.261 24 C -0.149 4.149 25 C -0.029 4.029 26 Cl -0.088 7.088 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.410 0.590 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.287 0.713 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.663 -10.953 4.584 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 H 0.125 0.875 4 C -0.075 4.075 5 N -0.163 5.163 6 C 0.019 3.981 7 N -0.355 5.355 8 C -0.081 4.081 9 C 0.399 3.601 10 O -0.495 6.495 11 N -0.308 5.308 12 C -0.045 4.045 13 C -0.099 4.099 14 C -0.230 4.230 15 C 0.080 3.920 16 C -0.524 4.524 17 H 0.096 0.904 18 C -0.180 4.180 19 N -0.460 5.460 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.184 1.184 24 C -0.170 4.170 25 C -0.058 4.058 26 Cl -0.059 7.059 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.089 0.911 35 H 0.249 0.751 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.620 -11.658 6.100 16.909 hybrid contribution 0.125 0.869 -1.024 1.349 sum -10.495 -10.789 5.075 15.884 Atomic orbital electron populations 1.21966 0.89339 1.04519 1.04301 1.19433 0.99225 0.99215 0.85335 0.87483 1.29340 0.91745 0.92354 0.94055 1.81251 1.10602 1.11403 1.13081 1.21300 1.01276 0.94806 0.80755 1.46866 1.20849 1.38102 1.29682 1.22269 0.83912 1.02403 0.99542 1.16065 0.83435 0.79732 0.80913 1.90914 1.25030 1.70759 1.62766 1.42061 1.27974 1.31737 1.29024 1.16662 1.04580 0.93706 0.89583 1.20370 0.97834 0.93514 0.98153 1.21030 1.05449 1.01185 0.95348 1.17833 0.91530 0.91646 0.90961 1.19703 1.09452 1.12639 1.10610 0.90406 1.26658 0.96129 0.99996 0.95174 1.69825 1.20084 1.38168 1.17912 0.85172 0.78372 0.77169 0.78823 1.18904 1.19386 1.18442 1.20816 1.01495 0.94420 1.00243 1.20401 1.01068 0.96677 0.87669 1.98246 1.77805 1.69354 1.60516 0.91480 0.89131 0.89709 0.85891 0.91264 0.91156 0.86671 0.91066 0.75117 0.86241 0.87495 0.90217 0.86624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.14 71.98 0.59 -0.53 16 2 C -0.01 -0.13 2.97 -12.60 -0.04 -0.17 16 3 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.24 4.79 14.65 89.44 1.31 6.10 16 5 N -0.49 -12.63 18.54 20.00 0.37 -12.26 16 6 C 0.14 2.19 4.85 86.38 0.42 2.61 16 7 N -0.62 -11.26 2.70 -864.92 -2.33 -13.59 16 8 C 0.06 0.57 9.22 127.77 1.18 1.75 16 9 C 0.70 20.88 7.99 179.06 1.43 22.31 16 10 O -0.61 -23.94 13.65 -3.97 -0.05 -23.99 16 11 N -0.66 -20.71 4.86 -316.70 -1.54 -22.25 16 12 C 0.05 2.07 6.27 38.58 0.24 2.31 16 13 C -0.08 -3.48 8.58 22.13 0.19 -3.29 16 14 C -0.21 -10.15 9.74 22.48 0.22 -9.93 16 15 C 0.08 4.35 5.50 -21.28 -0.12 4.23 16 16 C -0.49 -25.80 9.03 23.38 0.21 -25.59 16 17 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 18 C 0.03 1.67 5.31 85.23 0.45 2.12 16 19 N -0.83 -42.11 10.95 21.82 0.24 -41.87 16 20 Si 0.98 37.55 29.56 68.60 2.03 39.57 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 C -0.15 -7.48 8.33 22.49 0.19 -7.30 16 25 C -0.03 -1.28 6.30 22.18 0.14 -1.14 16 26 Cl -0.09 -3.10 27.90 -2.72 -0.08 -3.17 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.09 0.57 5.89 -2.39 -0.01 0.56 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.12 1.01 8.07 -2.39 -0.02 0.99 16 31 H 0.07 1.47 7.42 -2.39 -0.02 1.45 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.11 0.33 5.98 -2.39 -0.01 0.31 16 34 H 0.07 0.72 6.46 -2.39 -0.02 0.70 16 35 H 0.41 10.41 5.84 -92.70 -0.54 9.87 16 36 H 0.12 5.13 6.45 -2.91 -0.02 5.11 16 37 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 38 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 39 H 0.12 6.13 6.45 -2.91 -0.02 6.11 16 Total: -1.00 -67.28 345.68 5.61 -61.67 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.57 Total: 22.40 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 6.41 Total: -6.51 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -3.26 Total: -89.97 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.57 kcal Atomic # 17 Polarization: -3.10 SS G_CDS: -0.08 Total: -3.17 kcal Total: -67.28 5.61 -61.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455701110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.681 kcal (2) G-P(sol) polarization free energy of solvation -67.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds