Wall clock time and date at job start Tue Mar 31 2020 12:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21294 * 119.99884 * 2 1 4 4 N 1.34772 * 120.00035 * 179.97438 * 2 1 3 5 5 C 1.39977 * 120.00328 * 185.52203 * 4 2 1 6 6 C 1.38746 * 120.03125 * 24.83386 * 5 4 2 7 7 C 1.38773 * 119.86581 * 180.02562 * 6 5 4 8 8 N 1.39727 * 120.02513 * 180.02562 * 7 6 5 9 9 C 1.46506 * 119.99765 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46893 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47288 * 55.00181 * 10 9 8 12 12 C 1.47202 * 109.47109 * 295.00029 * 10 9 8 13 13 N 7.51469 * 144.46211 * 10.57094 * 2 1 3 14 14 C 1.53001 * 109.47093 * 175.00162 * 10 9 8 15 15 C 1.50702 * 109.47325 * 184.99946 * 14 10 9 16 16 H 1.07996 * 119.99532 * 0.02562 * 15 14 10 17 17 C 1.37872 * 119.99914 * 179.72558 * 15 14 10 18 18 N 1.31513 * 120.00010 * 180.27676 * 17 15 14 19 19 Si 1.86800 * 120.00214 * 0.27484 * 17 15 14 20 20 H 1.48495 * 109.47493 * 90.00123 * 19 17 15 21 21 H 1.48505 * 109.47184 * 210.00322 * 19 17 15 22 22 H 1.48503 * 109.46965 * 330.00056 * 19 17 15 23 23 C 1.38960 * 119.94420 * 0.28108 * 7 6 5 24 24 C 1.38153 * 120.07182 * 359.44629 * 23 7 6 25 25 C 1.38266 * 120.13341 * 0.54989 * 24 23 7 26 26 Cl 1.73598 * 119.97414 * 179.70434 * 25 24 23 27 27 H 1.09007 * 109.46902 * 270.00094 * 1 2 3 28 28 H 1.08999 * 109.47348 * 29.99391 * 1 2 3 29 29 H 1.08994 * 109.46849 * 150.00030 * 1 2 3 30 30 H 0.96999 * 120.00196 * 5.53004 * 4 2 1 31 31 H 1.07995 * 120.06624 * 0.04346 * 6 5 4 32 32 H 0.96996 * 120.00178 * 0.02562 * 8 7 6 33 33 H 1.09001 * 109.46952 * 60.00530 * 9 8 7 34 34 H 1.08992 * 109.46885 * 300.00146 * 9 8 7 35 35 H 1.09002 * 109.46779 * 64.99831 * 14 10 9 36 36 H 1.08996 * 109.46863 * 305.00469 * 14 10 9 37 37 H 0.97005 * 120.00177 * 180.02562 * 18 17 15 38 38 H 1.07992 * 119.96342 * 179.69831 * 23 7 6 39 39 H 1.07999 * 119.93465 * 180.27782 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5758 -1.1700 0.1172 6 6 4.2236 -0.1066 0.7292 7 6 5.6066 -0.1127 0.8425 8 7 6.2624 0.9563 1.4587 9 6 7.7226 0.9495 1.5775 10 6 8.1825 2.2250 2.2864 11 1 7.6690 2.3139 3.2437 12 6 7.8653 3.3933 1.4490 13 7 7.6219 4.2937 0.8013 14 6 9.6929 2.1612 2.5219 15 6 10.1268 3.3587 3.3275 16 1 9.3980 4.0916 3.6406 17 6 11.4531 3.5153 3.6701 18 7 11.8308 4.5574 4.3777 19 14 12.7135 2.2472 3.1291 20 1 13.2671 2.6325 1.8061 21 1 13.8122 2.1846 4.1262 22 1 12.0632 0.9161 3.0249 23 6 6.3392 -1.1803 0.3379 24 6 5.6913 -2.2405 -0.2660 25 6 4.3134 -2.2377 -0.3805 26 17 3.5041 -3.5686 -1.1470 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6993 -2.0053 -0.0801 31 1 3.6526 0.7241 1.1168 32 1 5.7509 1.7028 1.8077 33 1 8.1678 0.9052 0.5835 34 1 8.0360 0.0800 2.1551 35 1 10.2105 2.1618 1.5626 36 1 9.9376 1.2491 3.0661 37 1 12.7640 4.6678 4.6185 38 1 7.4159 -1.1830 0.4216 39 1 6.2625 -3.0712 -0.6534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554487697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:19 Heat of formation + Delta-G solvation = 4.730882 kcal Electronic energy + Delta-G solvation = -23228.196096 eV Core-core repulsion = 19582.361198 eV Total energy + Delta-G solvation = -3645.834899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84727 -39.10649 -37.53955 -36.57772 -35.54470 -34.53988 -33.55404 -31.97553 -31.26101 -29.61900 -28.50832 -26.87034 -24.10551 -23.22226 -21.90024 -21.46719 -20.63703 -18.41985 -17.36425 -17.09970 -16.97924 -16.65605 -16.05449 -15.75086 -15.42139 -14.58998 -14.33327 -14.20196 -13.95265 -13.71671 -13.56941 -13.39315 -13.04837 -12.97749 -12.65936 -12.59014 -12.36595 -12.20679 -12.00789 -11.74111 -11.56126 -11.40793 -11.16407 -10.97529 -10.89107 -10.44454 -10.13699 -10.05651 -9.92494 -9.76958 -9.43045 -8.68313 -8.42938 -7.44924 -6.17160 -4.19155 1.08560 1.29272 2.03783 2.28903 2.67827 3.22724 3.29467 3.30509 3.34158 3.44697 3.53278 3.66536 4.32062 4.32270 4.53096 4.66646 4.74865 4.94046 5.04980 5.07206 5.15584 5.17233 5.28166 5.35916 5.43883 5.58053 5.76365 5.82737 5.94914 6.05878 6.11777 6.14434 6.23661 6.59858 6.81887 6.97928 7.01104 7.22227 7.54263 7.63299 7.72844 8.24563 8.33907 8.85099 9.41746 10.95728 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.002672 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.415457 B =10475.839995 C =11698.344882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.516 6.516 4 N -0.669 5.669 5 C 0.204 3.796 6 C -0.203 4.203 7 C 0.251 3.749 8 N -0.737 5.737 9 C 0.126 3.874 10 C 0.008 3.992 11 H 0.114 0.886 12 C 0.232 3.768 13 N -0.455 5.455 14 C -0.002 4.002 15 C -0.532 4.532 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.262 1.262 23 C -0.205 4.205 24 C -0.038 4.038 25 C -0.133 4.133 26 Cl -0.085 7.085 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.412 0.588 31 H 0.151 0.849 32 H 0.403 0.597 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.024 0.976 36 H 0.042 0.958 37 H 0.266 0.734 38 H 0.135 0.865 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.578 -19.415 -7.814 29.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.297 3.703 3 O -0.391 6.391 4 N -0.315 5.315 5 C 0.107 3.893 6 C -0.228 4.228 7 C 0.144 3.856 8 N -0.364 5.364 9 C 0.001 3.999 10 C -0.014 4.014 11 H 0.132 0.868 12 C -0.086 4.086 13 N -0.131 5.131 14 C -0.041 4.041 15 C -0.570 4.570 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.533 5.533 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.186 1.186 23 C -0.229 4.229 24 C -0.058 4.058 25 C -0.164 4.164 26 Cl -0.057 7.057 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.101 0.899 30 H 0.249 0.751 31 H 0.168 0.832 32 H 0.239 0.761 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.152 0.848 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -20.292 -17.280 -8.739 28.049 hybrid contribution 0.443 -1.099 0.069 1.187 sum -19.849 -18.380 -8.670 28.407 Atomic orbital electron populations 1.21904 0.90548 1.05357 1.05279 1.21043 0.90977 0.83034 0.75234 1.90754 1.70217 1.31242 1.46873 1.43704 1.05241 1.10318 1.72197 1.17080 0.82457 0.94029 0.95704 1.20661 0.92793 1.01484 1.07833 1.17709 0.90753 0.87549 0.89624 1.44955 1.06553 1.21366 1.63529 1.21635 0.79273 0.97953 1.01076 1.19212 1.01844 0.84718 0.95620 0.86814 1.28919 0.92037 0.94332 0.93269 1.81056 1.10333 1.10799 1.10901 1.19621 0.86989 0.99506 0.97982 1.20977 0.94745 1.07122 1.34110 0.90767 1.24987 0.98420 0.95331 0.94317 1.69900 1.17231 1.28469 1.37656 0.86811 0.81441 0.82510 0.78748 1.20198 1.21189 1.18604 1.20635 1.00294 0.94748 1.07205 1.20555 0.91175 0.97951 0.96107 1.20234 0.92793 0.92775 1.10634 1.98316 1.79849 1.46705 1.80782 0.88260 0.88328 0.89914 0.75063 0.83191 0.76145 0.91280 0.89803 0.95808 0.94017 0.92449 0.84768 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.31 36.01 0.37 -0.44 16 2 C 0.51 4.82 7.74 -10.99 -0.09 4.73 16 3 O -0.52 -7.24 14.26 5.55 0.08 -7.16 16 4 N -0.67 -5.88 5.19 -9.85 -0.05 -5.93 16 5 C 0.20 2.31 6.43 -83.67 -0.54 1.77 16 6 C -0.20 -2.59 8.56 -39.20 -0.34 -2.92 16 7 C 0.25 3.12 6.65 -83.79 -0.56 2.56 16 8 N -0.74 -9.20 5.52 -58.64 -0.32 -9.52 16 9 C 0.13 1.59 4.27 -4.04 -0.02 1.57 16 10 C 0.01 0.13 2.26 -93.41 -0.21 -0.08 16 11 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 12 C 0.23 4.50 13.45 -20.77 -0.28 4.22 16 13 N -0.45 -9.91 18.53 42.14 0.78 -9.13 16 14 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 15 C -0.53 -13.84 9.15 -34.44 -0.32 -14.15 16 16 H 0.07 2.13 7.84 -52.49 -0.41 1.72 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 19 Si 0.88 20.04 27.47 -169.99 -4.67 15.37 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.26 -5.43 6.54 56.52 0.37 -5.07 16 23 C -0.21 -2.27 9.31 -39.34 -0.37 -2.64 16 24 C -0.04 -0.39 9.81 -39.60 -0.39 -0.78 16 25 C -0.13 -1.40 6.34 -39.29 -0.25 -1.65 16 26 Cl -0.08 -0.74 27.77 -51.86 -1.44 -2.18 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.41 2.50 7.75 -40.82 -0.32 2.19 16 31 H 0.15 2.09 5.79 -52.49 -0.30 1.78 16 32 H 0.40 5.05 8.23 -40.82 -0.34 4.72 16 33 H 0.07 0.87 7.94 -51.93 -0.41 0.46 16 34 H 0.08 0.91 7.96 -51.93 -0.41 0.50 16 35 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 36 H 0.04 0.78 7.19 -51.93 -0.37 0.41 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 38 H 0.13 1.31 6.72 -52.49 -0.35 0.96 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -33.39 352.62 -7.30 -40.69 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.59 Total: 4.37 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -3.17 Total: -6.06 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 1.18 Total: -50.34 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: 0.08 Total: -7.16 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.44 Total: -2.18 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.39 -7.30 -40.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554487697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.418 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds