Wall clock time and date at job start Tue Mar 31 2020 12:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21294 * 119.99884 * 2 1 4 4 N 1.34772 * 120.00035 * 179.97438 * 2 1 3 5 5 C 1.39977 * 120.00328 * 185.52203 * 4 2 1 6 6 C 1.38746 * 120.03125 * 24.83386 * 5 4 2 7 7 C 1.38773 * 119.86581 * 180.02562 * 6 5 4 8 8 N 1.39727 * 120.02513 * 180.02562 * 7 6 5 9 9 C 1.46506 * 119.99765 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46893 * 180.02562 * 9 8 7 11 11 H 1.09000 * 109.47288 * 55.00181 * 10 9 8 12 12 C 1.47202 * 109.47109 * 295.00029 * 10 9 8 13 13 N 7.51469 * 144.46211 * 10.57094 * 2 1 3 14 14 C 1.53001 * 109.47093 * 175.00162 * 10 9 8 15 15 C 1.50702 * 109.47325 * 184.99946 * 14 10 9 16 16 H 1.07996 * 119.99532 * 0.02562 * 15 14 10 17 17 C 1.37872 * 119.99914 * 179.72558 * 15 14 10 18 18 N 1.31513 * 120.00010 * 180.27676 * 17 15 14 19 19 Si 1.86800 * 120.00214 * 0.27484 * 17 15 14 20 20 H 1.48495 * 109.47493 * 90.00123 * 19 17 15 21 21 H 1.48505 * 109.47184 * 210.00322 * 19 17 15 22 22 H 1.48503 * 109.46965 * 330.00056 * 19 17 15 23 23 C 1.38960 * 119.94420 * 0.28108 * 7 6 5 24 24 C 1.38153 * 120.07182 * 359.44629 * 23 7 6 25 25 C 1.38266 * 120.13341 * 0.54989 * 24 23 7 26 26 Cl 1.73598 * 119.97414 * 179.70434 * 25 24 23 27 27 H 1.09007 * 109.46902 * 270.00094 * 1 2 3 28 28 H 1.08999 * 109.47348 * 29.99391 * 1 2 3 29 29 H 1.08994 * 109.46849 * 150.00030 * 1 2 3 30 30 H 0.96999 * 120.00196 * 5.53004 * 4 2 1 31 31 H 1.07995 * 120.06624 * 0.04346 * 6 5 4 32 32 H 0.96996 * 120.00178 * 0.02562 * 8 7 6 33 33 H 1.09001 * 109.46952 * 60.00530 * 9 8 7 34 34 H 1.08992 * 109.46885 * 300.00146 * 9 8 7 35 35 H 1.09002 * 109.46779 * 64.99831 * 14 10 9 36 36 H 1.08996 * 109.46863 * 305.00469 * 14 10 9 37 37 H 0.97005 * 120.00177 * 180.02562 * 18 17 15 38 38 H 1.07992 * 119.96342 * 179.69831 * 23 7 6 39 39 H 1.07999 * 119.93465 * 180.27782 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5758 -1.1700 0.1172 6 6 4.2236 -0.1066 0.7292 7 6 5.6066 -0.1127 0.8425 8 7 6.2624 0.9563 1.4587 9 6 7.7226 0.9495 1.5775 10 6 8.1825 2.2250 2.2864 11 1 7.6690 2.3139 3.2437 12 6 7.8653 3.3933 1.4490 13 7 7.6219 4.2937 0.8013 14 6 9.6929 2.1612 2.5219 15 6 10.1268 3.3587 3.3275 16 1 9.3980 4.0916 3.6406 17 6 11.4531 3.5153 3.6701 18 7 11.8308 4.5574 4.3777 19 14 12.7135 2.2472 3.1291 20 1 13.2671 2.6325 1.8061 21 1 13.8122 2.1846 4.1262 22 1 12.0632 0.9161 3.0249 23 6 6.3392 -1.1803 0.3379 24 6 5.6913 -2.2405 -0.2660 25 6 4.3134 -2.2377 -0.3805 26 17 3.5041 -3.5686 -1.1470 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6993 -2.0053 -0.0801 31 1 3.6526 0.7241 1.1168 32 1 5.7509 1.7028 1.8077 33 1 8.1678 0.9052 0.5835 34 1 8.0360 0.0800 2.1551 35 1 10.2105 2.1618 1.5626 36 1 9.9376 1.2491 3.0661 37 1 12.7640 4.6678 4.6185 38 1 7.4159 -1.1830 0.4216 39 1 6.2625 -3.0712 -0.6534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554487697.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:18 Heat of formation + Delta-G solvation = -17.735658 kcal Electronic energy + Delta-G solvation = -23229.170318 eV Core-core repulsion = 19582.361198 eV Total energy + Delta-G solvation = -3646.809121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.63611 -39.98929 -38.74330 -37.50070 -36.56857 -35.75652 -35.05037 -33.59325 -31.93697 -30.66547 -29.29560 -28.26494 -25.20164 -24.21778 -23.33423 -22.54548 -21.43837 -19.27010 -18.95691 -18.49364 -17.98557 -17.46973 -17.00947 -16.69188 -16.45161 -15.99363 -15.39664 -15.19217 -15.08758 -14.81984 -14.68434 -14.44777 -14.35266 -14.16239 -13.84137 -13.44179 -13.30849 -13.19215 -13.09923 -13.07962 -12.81827 -12.56041 -12.46693 -12.04142 -11.85482 -11.76329 -11.70270 -11.69051 -11.35674 -10.86959 -10.73476 -10.59538 -9.26027 -8.32639 -8.24371 -6.30884 0.25747 0.45330 1.26340 1.46051 1.46896 1.56600 1.57809 1.86955 1.91187 2.00324 2.42249 2.46781 2.82247 3.08961 3.16525 3.72641 3.85545 3.92300 4.22256 4.28200 4.36469 4.38389 4.51986 4.55621 4.62387 4.70676 4.81380 4.86663 4.99547 5.09431 5.21883 5.24427 5.32312 5.39113 5.41562 5.62606 5.77164 6.23003 6.34151 6.34730 6.63867 6.72081 6.79207 7.04301 7.33891 8.92492 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.018657 B = 0.002672 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.415457 B =10475.839995 C =11698.344882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.569 6.569 4 N -0.660 5.660 5 C 0.194 3.806 6 C -0.222 4.222 7 C 0.239 3.761 8 N -0.742 5.742 9 C 0.137 3.863 10 C 0.015 3.985 11 H 0.125 0.875 12 C 0.245 3.755 13 N -0.505 5.505 14 C -0.001 4.001 15 C -0.533 4.533 16 H 0.028 0.972 17 C 0.001 3.999 18 N -0.956 5.956 19 Si 0.948 3.052 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.215 1.215 23 C -0.207 4.207 24 C -0.036 4.036 25 C -0.137 4.137 26 Cl -0.068 7.068 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.426 0.574 31 H 0.131 0.869 32 H 0.399 0.601 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.264 0.736 38 H 0.152 0.848 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.007 -23.624 -8.922 32.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.448 6.448 4 N -0.306 5.306 5 C 0.097 3.903 6 C -0.247 4.247 7 C 0.132 3.868 8 N -0.370 5.370 9 C 0.012 3.988 10 C -0.007 4.007 11 H 0.143 0.857 12 C -0.071 4.071 13 N -0.182 5.182 14 C -0.040 4.040 15 C -0.571 4.571 16 H 0.046 0.954 17 C -0.195 4.195 18 N -0.596 5.596 19 Si 0.771 3.229 20 H -0.204 1.204 21 H -0.219 1.219 22 H -0.137 1.137 23 C -0.231 4.231 24 C -0.056 4.056 25 C -0.168 4.168 26 Cl -0.040 7.040 27 H 0.135 0.865 28 H 0.115 0.885 29 H 0.132 0.868 30 H 0.265 0.735 31 H 0.149 0.851 32 H 0.234 0.766 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.170 0.830 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -20.780 -21.559 -9.864 31.527 hybrid contribution 0.448 0.231 0.414 0.652 sum -20.333 -21.328 -9.450 30.945 Atomic orbital electron populations 1.21953 0.86628 1.06801 1.06799 1.21961 0.92797 0.82247 0.73664 1.90737 1.71617 1.33057 1.49366 1.43727 1.04516 1.10956 1.71442 1.17233 0.83661 0.93935 0.95509 1.20622 0.93258 1.01726 1.09135 1.17833 0.90714 0.87983 0.90224 1.44894 1.06410 1.21560 1.64113 1.21567 0.79378 0.96431 1.01412 1.19301 0.99924 0.85276 0.96186 0.85734 1.29658 0.90748 0.94243 0.92463 1.81055 1.11868 1.12407 1.12860 1.19580 0.89167 0.97801 0.97439 1.21386 0.93849 1.08085 1.33768 0.95408 1.26070 1.01229 0.97726 0.94503 1.70094 1.17675 1.31507 1.40356 0.85704 0.78154 0.81538 0.77551 1.20381 1.21861 1.13693 1.20866 1.01128 0.94291 1.06775 1.20876 0.91173 0.98295 0.95260 1.20372 0.93223 0.92980 1.10250 1.98321 1.79595 1.45658 1.80399 0.86514 0.88475 0.86848 0.73479 0.85133 0.76648 0.90677 0.86706 0.95050 0.90782 0.92686 0.83010 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 10.31 71.24 0.73 -0.50 16 2 C 0.50 9.30 7.74 87.66 0.68 9.98 16 3 O -0.57 -16.59 14.26 -3.07 -0.04 -16.64 16 4 N -0.66 -10.87 5.19 -303.47 -1.58 -12.45 16 5 C 0.19 4.21 6.43 38.14 0.25 4.46 16 6 C -0.22 -5.68 8.56 22.52 0.19 -5.49 16 7 C 0.24 5.64 6.65 38.18 0.25 5.89 16 8 N -0.74 -17.61 5.52 -339.44 -1.87 -19.48 16 9 C 0.14 3.05 4.27 86.38 0.37 3.42 16 10 C 0.01 0.46 2.26 -12.60 -0.03 0.43 16 11 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 12 C 0.25 9.56 13.45 89.45 1.20 10.76 16 13 N -0.50 -22.55 18.53 20.00 0.37 -22.18 16 14 C 0.00 -0.03 3.49 29.85 0.10 0.07 16 15 C -0.53 -27.87 9.15 25.60 0.23 -27.64 16 16 H 0.03 1.66 7.84 -2.91 -0.02 1.64 16 17 C 0.00 0.07 5.47 84.65 0.46 0.54 16 18 N -0.96 -58.61 13.96 21.45 0.30 -58.31 16 19 Si 0.95 40.09 27.47 68.60 1.88 41.97 16 20 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.21 -7.45 6.54 99.48 0.65 -6.79 16 23 C -0.21 -4.01 9.31 22.42 0.21 -3.80 16 24 C -0.04 -0.64 9.81 22.26 0.22 -0.42 16 25 C -0.14 -2.60 6.34 22.46 0.14 -2.46 16 26 Cl -0.07 -1.02 27.77 -2.72 -0.08 -1.10 16 27 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.43 4.33 7.75 -92.71 -0.72 3.61 16 31 H 0.13 3.85 5.79 -2.91 -0.02 3.83 16 32 H 0.40 10.03 8.23 -92.71 -0.76 9.26 16 33 H 0.08 1.63 7.94 -2.39 -0.02 1.61 16 34 H 0.12 1.92 7.96 -2.39 -0.02 1.90 16 35 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 36 H 0.07 2.39 7.19 -2.39 -0.02 2.37 16 37 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 38 H 0.15 2.34 6.72 -2.91 -0.02 2.32 16 39 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -77.18 352.62 3.58 -73.60 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -0.42 Total: 19.35 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.02 Total: -4.76 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -2.78 Total: -112.42 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.04 Total: -16.64 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.88 Total: 41.97 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -77.18 3.58 -73.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554487697.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.862 kcal (2) G-P(sol) polarization free energy of solvation -77.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds