Wall clock time and date at job start Tue Mar 31 2020 12:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47129 * 2 1 4 4 C 1.42908 * 113.99784 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46852 * 180.02562 * 4 3 2 6 6 H 1.08996 * 109.46928 * 184.99893 * 5 4 3 7 7 N 1.46499 * 109.47283 * 64.99904 * 5 4 3 8 8 S 1.65597 * 120.00047 * 144.99984 * 7 5 4 9 9 O 1.42099 * 104.27521 * 308.92615 * 8 7 5 10 10 O 1.42103 * 104.27803 * 181.06732 * 8 7 5 11 11 C 1.81399 * 104.44909 * 64.99639 * 8 7 5 12 12 C 1.52999 * 109.47446 * 180.58164 * 11 8 7 13 13 C 1.50704 * 115.54751 * 294.54676 * 12 11 8 14 14 H 1.07999 * 120.00146 * 95.20725 * 13 12 11 15 15 C 1.37880 * 120.00000 * 274.93505 * 13 12 11 16 16 N 1.31513 * 119.99852 * 359.66031 * 15 13 12 17 17 Si 1.86798 * 120.00119 * 179.66541 * 15 13 12 18 18 H 1.48500 * 109.47344 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47043 * 119.99951 * 17 15 13 20 20 H 1.48498 * 109.47118 * 239.99921 * 17 15 13 21 21 C 1.52997 * 117.50053 * 80.21087 * 12 11 8 22 22 C 1.52997 * 117.50341 * 148.87556 * 12 11 8 23 23 C 1.50697 * 109.46758 * 304.99363 * 5 4 3 24 24 O 1.20833 * 119.99808 * 120.00600 * 23 5 4 25 25 O 1.34228 * 120.00629 * 300.00159 * 23 5 4 26 26 H 1.08996 * 109.47744 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47309 * 300.00506 * 1 2 3 28 28 H 1.09009 * 109.47218 * 60.00174 * 1 2 3 29 29 H 1.09006 * 109.47173 * 239.99896 * 2 1 3 30 30 H 1.08996 * 109.46877 * 119.99925 * 2 1 3 31 31 H 1.08997 * 109.47147 * 59.99697 * 4 3 2 32 32 H 1.09002 * 109.46391 * 300.00070 * 4 3 2 33 33 H 0.96999 * 119.99646 * 324.99526 * 7 5 4 34 34 H 1.09004 * 109.47295 * 60.58324 * 11 8 7 35 35 H 1.09000 * 109.47424 * 300.58337 * 11 8 7 36 36 H 0.96999 * 120.00328 * 185.01518 * 16 15 13 37 37 H 1.09007 * 117.50005 * 215.00655 * 21 12 11 38 38 H 1.08998 * 117.49619 * 0.02874 * 21 12 11 39 39 H 1.09003 * 117.49779 * 359.97436 * 22 12 11 40 40 H 1.09005 * 117.50044 * 144.97267 * 22 12 11 41 41 H 0.96694 * 117.00186 * 179.97438 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9383 0.0001 6 1 4.9082 3.0254 -0.0899 7 7 3.3879 3.5600 1.2525 8 16 4.3064 4.7465 1.9530 9 8 5.6119 4.1888 2.0143 10 8 3.5979 5.0849 3.1374 11 6 4.2552 6.1181 0.7669 12 6 5.0894 7.2847 1.2998 13 6 4.5700 7.9343 2.5565 14 1 4.9506 7.6281 3.5197 15 6 3.6130 8.9237 2.4763 16 7 3.1583 9.3050 1.3027 17 14 2.9624 9.7224 4.0345 18 1 3.6301 9.1193 5.2159 19 1 3.2426 11.1803 3.9976 20 1 1.4969 9.5022 4.1288 21 6 6.6068 7.2088 1.1191 22 6 5.7828 8.1839 0.2744 23 6 3.1671 3.6344 -1.1631 24 8 2.4101 4.5554 -0.9663 25 8 3.4217 3.2314 -2.4179 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.8333 0.9766 -0.8908 32 1 3.8339 0.9763 0.8892 33 1 2.5602 3.2765 1.6713 34 1 3.2234 6.4419 0.6301 35 1 4.6619 5.7874 -0.1888 36 1 2.5399 10.0497 1.2407 37 1 7.2294 7.6288 1.9091 38 1 7.0107 6.3279 0.6201 39 1 5.6451 7.9441 -0.7800 40 1 5.8630 9.2455 0.5086 41 1 2.9757 3.7083 -3.1312 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568001682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:48 Heat of formation + Delta-G solvation = -183.503207 kcal Electronic energy + Delta-G solvation = -26708.798232 eV Core-core repulsion = 22717.242927 eV Total energy + Delta-G solvation = -3991.555306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38856 -38.33523 -36.72336 -36.39562 -36.18984 -35.23800 -34.98587 -31.97076 -31.57630 -29.01371 -28.14892 -25.40166 -24.66880 -23.07530 -21.34967 -21.16667 -19.80385 -18.85122 -18.10226 -17.42293 -17.09030 -16.82796 -16.41967 -16.10278 -15.74972 -15.45902 -14.96752 -14.64731 -14.43454 -14.04719 -13.76336 -13.51748 -13.21866 -13.03721 -12.73974 -12.29085 -11.91677 -11.79084 -11.72999 -11.53409 -11.44273 -11.35785 -11.28498 -11.14908 -10.96534 -10.89458 -10.83208 -10.52992 -10.42261 -10.07668 -9.90625 -9.76681 -9.41204 -8.95909 -8.50045 -8.06193 -6.06124 -4.18236 0.99488 2.22324 2.76562 3.27648 3.33422 3.36935 3.42180 3.49528 4.43086 4.43485 4.50534 4.71322 4.78182 4.85024 4.94390 5.04083 5.07902 5.09870 5.20839 5.24028 5.33928 5.43855 5.64708 5.67354 5.74286 5.87690 6.04487 6.28724 6.42479 6.50388 6.67665 6.74238 6.84089 7.04526 7.12793 7.29842 7.45752 7.86769 7.90203 8.24883 8.87907 9.53208 11.01155 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.004377 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.947092 B = 6396.091128 C = 6718.807020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.386 6.386 4 C 0.064 3.936 5 C 0.168 3.832 6 H 0.142 0.858 7 N -1.103 6.103 8 S 2.598 3.402 9 O -0.974 6.974 10 O -0.939 6.939 11 C -0.542 4.542 12 C 0.039 3.961 13 C -0.511 4.511 14 H 0.069 0.931 15 C 0.079 3.921 16 N -0.873 5.873 17 Si 0.893 3.107 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.281 1.281 21 C -0.212 4.212 22 C -0.134 4.134 23 C 0.457 3.543 24 O -0.482 6.482 25 O -0.519 6.519 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.423 0.577 34 H 0.141 0.859 35 H 0.089 0.911 36 H 0.262 0.738 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 -17.878 -7.952 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 O -0.306 6.306 4 C -0.014 4.014 5 C 0.057 3.943 6 H 0.159 0.841 7 N -0.859 5.859 8 S 2.696 3.304 9 O -0.964 6.964 10 O -0.929 6.929 11 C -0.676 4.676 12 C 0.037 3.963 13 C -0.548 4.548 14 H 0.087 0.913 15 C -0.126 4.126 16 N -0.509 5.509 17 Si 0.720 3.280 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.206 1.206 21 C -0.250 4.250 22 C -0.173 4.173 23 C 0.295 3.705 24 O -0.367 6.367 25 O -0.331 6.331 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.258 0.742 34 H 0.160 0.840 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -0.888 -17.647 -6.873 18.959 hybrid contribution -1.263 0.822 -0.412 1.562 sum -2.151 -16.825 -7.285 18.460 Atomic orbital electron populations 1.21749 0.93624 1.02192 1.03435 1.22481 0.95734 0.83265 1.00270 1.87930 1.20131 1.27012 1.95525 1.22682 0.82657 0.93283 1.02800 1.20301 1.00243 0.92153 0.81593 0.84075 1.55987 1.40810 1.56724 1.32363 1.05515 0.73582 0.74875 0.76397 1.93501 1.39004 1.77004 1.86894 1.93573 1.72759 1.83151 1.43399 1.29967 1.11468 1.14336 1.11786 1.18342 0.87118 0.93493 0.97361 1.20564 1.22243 1.21392 0.90632 0.91251 1.24967 0.94966 0.96406 0.96248 1.70019 1.31291 1.26367 1.23177 0.86505 0.79188 0.78566 0.83746 1.19163 1.20990 1.20638 1.23236 0.95869 1.01766 1.04099 1.22500 1.03605 0.96985 0.94219 1.24027 0.80271 0.82165 0.84073 1.90806 1.33043 1.27507 1.85320 1.84465 1.69201 1.62337 1.17050 0.91091 0.91595 0.91869 0.93190 0.93040 0.90542 0.90502 0.74217 0.84041 0.89223 0.92865 0.89462 0.90808 0.91734 0.89316 0.73103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.48 6.66 37.16 0.25 0.73 16 3 O -0.39 -4.32 9.53 -35.23 -0.34 -4.66 16 4 C 0.06 0.63 5.67 37.16 0.21 0.84 16 5 C 0.17 2.16 3.12 -69.08 -0.22 1.94 16 6 H 0.14 1.57 7.48 -51.93 -0.39 1.18 16 7 N -1.10 -17.40 4.84 -5.88 -0.03 -17.43 16 8 S 2.60 53.39 5.25 -107.50 -0.56 52.83 16 9 O -0.97 -20.46 17.39 -57.54 -1.00 -21.47 16 10 O -0.94 -22.82 17.46 -57.54 -1.00 -23.82 16 11 C -0.54 -12.01 4.64 37.16 0.17 -11.84 16 12 C 0.04 0.98 1.38 -155.66 -0.21 0.77 16 13 C -0.51 -14.32 7.96 -34.44 -0.27 -14.59 16 14 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 15 C 0.08 2.22 5.42 -17.82 -0.10 2.12 16 16 N -0.87 -24.92 12.74 55.43 0.71 -24.22 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 C -0.21 -4.70 9.96 -26.69 -0.27 -4.97 16 22 C -0.13 -3.13 9.25 -26.69 -0.25 -3.38 16 23 C 0.46 6.31 6.59 36.00 0.24 6.55 16 24 O -0.48 -8.52 15.72 -18.76 -0.29 -8.81 16 25 O -0.52 -5.29 13.35 -39.25 -0.52 -5.81 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.42 6.27 8.54 -34.47 -0.29 5.98 16 34 H 0.14 3.44 7.84 -51.92 -0.41 3.04 16 35 H 0.09 1.72 7.61 -51.92 -0.39 1.32 16 36 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 37 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 41 H 0.41 2.73 9.10 45.56 0.41 3.14 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -35.99 364.33 -7.91 -43.90 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.27 Total: 9.57 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -0.06 Total: -22.62 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.68 Total: -41.65 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -3.16 Total: -64.57 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.56 Total: 52.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.99 -7.91 -43.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568001682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.607 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds