Wall clock time and date at job start Tue Mar 31 2020 12:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47047 * 2 1 4 4 H 1.09002 * 109.47229 * 177.95996 * 3 2 1 5 5 C 1.50707 * 109.46852 * 57.97133 * 3 2 1 6 6 H 1.08000 * 119.99422 * 239.99934 * 5 3 2 7 7 C 1.37875 * 120.00367 * 59.99275 * 5 3 2 8 8 N 1.31518 * 119.99685 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00180 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46904 * 60.00302 * 9 7 5 11 11 H 1.48498 * 109.47406 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47130 * 300.00843 * 9 7 5 13 13 N 1.46897 * 109.47713 * 297.96894 * 3 2 1 14 14 C 1.46895 * 110.99753 * 273.75187 * 13 3 2 15 15 C 1.50703 * 109.47130 * 174.93472 * 14 13 3 16 16 N 1.30976 * 126.43848 * 90.00031 * 15 14 13 17 17 C 1.35226 * 105.58098 * 179.97438 * 16 15 14 18 18 C 1.48399 * 126.41426 * 179.97438 * 17 16 15 19 19 C 1.39342 * 120.10852 * 359.72215 * 18 17 16 20 20 C 1.37985 * 119.89369 * 179.76911 * 19 18 17 21 21 C 1.38451 * 120.10353 * 0.50608 * 20 19 18 22 22 Cl 1.73602 * 119.89072 * 179.76715 * 21 20 19 23 23 C 1.38449 * 120.21557 * 359.74639 * 21 20 19 24 24 C 1.37982 * 120.10346 * 359.97438 * 23 21 20 25 25 N 1.30772 * 107.16537 * 359.97438 * 17 16 15 26 26 O 1.21287 * 110.10148 * 359.74807 * 25 17 16 27 27 H 1.09005 * 109.46860 * 54.45141 * 1 2 3 28 28 H 1.08994 * 109.47292 * 294.45039 * 1 2 3 29 29 H 1.09003 * 109.46793 * 174.44602 * 1 2 3 30 30 H 1.08999 * 109.46975 * 120.00250 * 2 1 3 31 31 H 1.09005 * 109.47199 * 240.00189 * 2 1 3 32 32 H 0.97003 * 119.99464 * 179.97438 * 8 7 5 33 33 H 1.00893 * 111.00236 * 149.79220 * 13 3 2 34 34 H 1.09002 * 109.47243 * 294.93244 * 14 13 3 35 35 H 1.09001 * 109.47481 * 54.93213 * 14 13 3 36 36 H 1.08000 * 120.05305 * 359.97438 * 19 18 17 37 37 H 1.07998 * 119.95042 * 180.22938 * 20 19 18 38 38 H 1.07996 * 119.94557 * 179.97438 * 23 21 20 39 39 H 1.08008 * 120.04965 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0366 5 6 1.4969 2.1672 1.2046 6 1 0.8798 3.0440 1.0744 7 6 1.7878 1.7110 2.4728 8 7 2.5396 0.6436 2.6312 9 14 1.1153 2.6098 3.9658 10 1 -0.3690 2.6101 3.9163 11 1 1.5696 1.9244 5.2024 12 1 1.6108 4.0096 3.9656 13 7 1.5909 2.1208 -1.2231 14 6 2.5280 1.8859 -2.3297 15 6 1.9739 2.4901 -3.5942 16 7 2.1753 3.7098 -4.0268 17 6 1.4883 3.8014 -5.1880 18 6 1.4002 4.9933 -6.0677 19 6 2.0621 6.1691 -5.7200 20 6 1.9811 7.2732 -6.5437 21 6 1.2350 7.2172 -7.7087 22 17 1.1319 8.6115 -8.7378 23 6 0.5713 6.0528 -8.0557 24 6 0.6510 4.9418 -7.2414 25 7 0.9163 2.6430 -5.3904 26 8 1.1896 1.8798 -4.4882 27 1 -0.3633 0.5975 -0.8362 28 1 -0.3633 0.4253 0.9354 29 1 -0.3633 -1.0229 -0.0995 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.7445 0.3228 3.5234 33 1 1.4615 3.1084 -1.0623 34 1 3.4879 2.3470 -2.0970 35 1 2.6645 0.8134 -2.4689 36 1 2.6403 6.2152 -4.8090 37 1 2.4967 8.1839 -6.2770 38 1 -0.0098 6.0141 -8.9652 39 1 0.1332 4.0337 -7.5132 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568182461.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:47 Heat of formation + Delta-G solvation = 67.874077 kcal Electronic energy + Delta-G solvation = -23297.750969 eV Core-core repulsion = 19654.654165 eV Total energy + Delta-G solvation = -3643.096804 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.62084 -40.42227 -38.36792 -37.67715 -36.81001 -35.19815 -33.69214 -32.43223 -32.20205 -31.42191 -28.92549 -26.73033 -25.84491 -25.03496 -24.31512 -23.42708 -22.12869 -20.97489 -19.24443 -19.12921 -18.32969 -17.92910 -16.99770 -16.83426 -16.48418 -16.03090 -15.82352 -15.37055 -15.15553 -14.75875 -14.71141 -14.63881 -14.20077 -13.86753 -13.51219 -13.40785 -13.15155 -13.01121 -12.79667 -12.73629 -12.68055 -12.42571 -12.34945 -12.23527 -11.99061 -11.87012 -11.65672 -11.35548 -11.23491 -10.77788 -10.51103 -10.22053 -9.68614 -9.18442 -8.07651 -6.18161 -0.58886 0.15012 0.17720 0.99495 1.24462 1.45634 1.47285 1.53375 1.71286 2.33957 2.45807 2.53666 2.82171 3.22479 3.59597 3.71836 3.77383 3.85464 4.09535 4.22650 4.26858 4.42761 4.49356 4.58994 4.69013 4.74188 4.85041 4.85983 4.99642 5.04127 5.07490 5.26416 5.31994 5.40591 5.53855 5.58111 5.73415 5.83566 5.91079 6.29895 6.37228 6.66356 6.96672 7.00818 7.49697 8.96992 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.002303 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.272030 B =12152.999989 C =13034.358822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C 0.226 3.774 4 H -0.013 1.013 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.679 5.679 14 C 0.149 3.851 15 C 0.220 3.780 16 N -0.490 5.490 17 C 0.202 3.798 18 C -0.035 4.035 19 C -0.067 4.067 20 C -0.108 4.108 21 C -0.022 4.022 22 Cl -0.056 7.056 23 C -0.107 4.107 24 C -0.075 4.075 25 N -0.391 5.391 26 O 0.081 5.919 27 H 0.051 0.949 28 H 0.028 0.972 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.261 0.739 33 H 0.339 0.661 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.145 0.855 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 10.370 -20.606 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C 0.119 3.881 4 H 0.005 0.995 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.312 5.312 14 C 0.018 3.982 15 C -0.001 4.001 16 N -0.224 5.224 17 C -0.067 4.067 18 C -0.037 4.037 19 C -0.087 4.087 20 C -0.127 4.127 21 C -0.050 4.050 22 Cl -0.027 7.027 23 C -0.125 4.125 24 C -0.095 4.095 25 N -0.099 5.099 26 O 0.023 5.977 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.180 0.820 38 H 0.181 0.819 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.479 10.057 -21.399 23.691 hybrid contribution 0.490 0.716 1.473 1.710 sum -0.989 10.774 -19.926 22.674 Atomic orbital electron populations 1.21330 0.96532 0.98486 1.00453 1.21371 0.95934 0.97413 0.99321 1.18960 0.92300 0.92082 0.84788 0.99547 1.21352 1.31702 1.12074 0.91251 0.92690 1.25488 0.95355 0.95652 1.01164 1.69978 1.38052 1.23984 1.22972 0.85764 0.78755 0.78825 0.79180 1.20111 1.21262 1.19911 1.60598 1.46981 1.17042 1.06541 1.20516 0.93923 1.01947 0.81797 1.28969 0.89367 0.86975 0.94819 1.72008 1.23819 1.16957 1.09642 1.24214 0.95095 0.94349 0.93077 1.17624 1.02276 0.89644 0.94188 1.21265 0.97034 0.90582 0.99828 1.21229 0.99043 0.99777 0.92631 1.21273 1.00219 0.89697 0.93773 1.98393 1.97116 1.40566 1.66644 1.21192 0.99808 0.90367 1.01164 1.21229 0.96616 0.99524 0.92093 1.74828 1.21722 1.03028 1.10338 1.85275 1.50385 1.37380 1.24684 0.93016 0.95256 0.94675 0.92073 0.94732 0.92954 0.84380 0.89879 0.86403 0.83750 0.82031 0.81852 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.61 9.46 71.98 0.68 -3.93 16 2 C -0.10 -4.48 5.58 30.59 0.17 -4.31 16 3 C 0.23 10.19 2.30 44.17 0.10 10.29 16 4 H -0.01 -0.64 7.84 -2.39 -0.02 -0.66 16 5 C -0.53 -26.48 7.34 25.60 0.19 -26.29 16 6 H 0.05 2.77 7.60 -2.91 -0.02 2.75 16 7 C 0.02 1.21 5.30 84.65 0.45 1.66 16 8 N -0.91 -49.17 11.34 21.45 0.24 -48.93 16 9 Si 0.95 41.77 29.54 68.60 2.03 43.80 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 N -0.68 -25.40 5.50 -499.46 -2.75 -28.15 16 14 C 0.15 4.52 6.08 85.56 0.52 5.04 16 15 C 0.22 6.67 8.05 88.36 0.71 7.38 16 16 N -0.49 -15.11 11.26 -302.47 -3.41 -18.51 16 17 C 0.20 5.93 7.80 137.28 1.07 7.00 16 18 C -0.04 -0.84 5.88 -20.04 -0.12 -0.96 16 19 C -0.07 -1.36 9.70 22.48 0.22 -1.14 16 20 C -0.11 -1.74 9.81 22.26 0.22 -1.52 16 21 C -0.02 -0.35 6.32 22.37 0.14 -0.21 16 22 Cl -0.06 -0.78 28.95 -2.72 -0.08 -0.86 16 23 C -0.11 -1.64 9.81 22.26 0.22 -1.42 16 24 C -0.07 -1.45 9.69 22.47 0.22 -1.23 16 25 N -0.39 -11.98 11.86 -59.11 -0.70 -12.68 16 26 O 0.08 2.51 11.29 74.58 0.84 3.35 16 27 H 0.05 2.08 7.50 -2.38 -0.02 2.06 16 28 H 0.03 1.33 7.37 -2.39 -0.02 1.31 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 3.07 6.13 -2.39 -0.01 3.05 16 31 H 0.03 1.34 7.43 -2.38 -0.02 1.33 16 32 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 33 H 0.34 12.95 8.24 -89.70 -0.74 12.21 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.12 3.26 7.40 -2.39 -0.02 3.25 16 36 H 0.14 2.95 7.88 -2.91 -0.02 2.92 16 37 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.14 2.65 7.87 -2.91 -0.02 2.63 16 Total: -1.00 -56.35 350.13 1.32 -55.03 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.35 Total: 16.59 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 4.79 Total: -9.64 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -6.61 Total: -108.26 kcal Atomic # 8 Polarization: 2.51 SS G_CDS: 0.84 Total: 3.35 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -56.35 1.32 -55.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568182461.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.901 kcal (2) G-P(sol) polarization free energy of solvation -56.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds