Wall clock time and date at job start Tue Mar 31 2020 13:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34749 * 116.99802 * 2 1 4 4 O 1.21504 * 120.00304 * 359.97438 * 3 2 1 5 5 C 1.47471 * 119.99756 * 180.02562 * 3 2 1 6 6 C 1.39815 * 120.09115 * 359.97438 * 5 3 2 7 7 C 1.37667 * 119.90396 * 179.97438 * 6 5 3 8 8 C 1.39038 * 120.09206 * 0.02562 * 7 6 5 9 9 O 1.35693 * 119.90466 * 179.97438 * 8 7 6 10 10 C 1.42901 * 117.00163 * 5.30292 * 9 8 7 11 11 C 1.52998 * 109.47318 * 180.63197 * 10 9 8 12 12 C 1.50705 * 115.55300 * 271.92185 * 11 10 9 13 13 H 1.08000 * 119.99572 * 114.82472 * 12 11 10 14 14 C 1.37872 * 120.00036 * 294.83042 * 12 11 10 15 15 N 1.31516 * 120.00108 * 355.78318 * 14 12 11 16 16 Si 1.86802 * 120.00089 * 175.78053 * 14 12 11 17 17 H 1.48500 * 109.46795 * 89.99937 * 16 14 12 18 18 H 1.48502 * 109.47060 * 209.99864 * 16 14 12 19 19 H 1.48493 * 109.46934 * 329.99850 * 16 14 12 20 20 C 1.53002 * 117.49816 * 126.21278 * 11 10 9 21 21 C 1.52997 * 60.00037 * 252.51255 * 20 11 10 22 22 C 1.38985 * 120.18737 * 0.27069 * 8 7 6 23 23 N 1.48017 * 119.95476 * 179.72764 * 22 8 7 24 24 O 1.21809 * 120.00378 * 185.23002 * 23 22 8 25 25 O 1.21797 * 119.99903 * 5.23318 * 23 22 8 26 26 C 1.37709 * 120.09680 * 359.44934 * 22 8 7 27 27 H 1.08998 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46864 * 300.00264 * 1 2 3 29 29 H 1.08999 * 109.46894 * 60.00316 * 1 2 3 30 30 H 1.08000 * 120.04773 * 359.96296 * 6 5 3 31 31 H 1.07995 * 119.95067 * 179.97438 * 7 6 5 32 32 H 1.09003 * 109.46757 * 60.63731 * 10 9 8 33 33 H 1.08998 * 109.47318 * 300.63705 * 10 9 8 34 34 H 0.96997 * 120.00532 * 185.03201 * 15 14 12 35 35 H 1.09002 * 117.49761 * 0.02562 * 20 11 10 36 36 H 1.09005 * 117.49593 * 145.02252 * 20 11 10 37 37 H 1.09002 * 117.50008 * 252.50756 * 21 20 11 38 38 H 1.09000 * 117.52159 * 107.48124 * 21 20 11 39 39 H 1.08002 * 120.05260 * 180.29458 * 26 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5364 1.2778 -0.0006 6 6 4.2997 0.1064 -0.0006 7 6 5.6743 0.1830 -0.0016 8 6 6.3035 1.4228 -0.0022 9 8 7.6585 1.4938 -0.0027 10 6 8.3727 0.2617 -0.1203 11 6 9.8770 0.5389 -0.0866 12 6 10.5137 0.8338 -1.4203 13 1 10.9356 1.8091 -1.6134 14 6 10.5576 -0.1413 -2.3940 15 7 10.1191 -1.3531 -2.1313 16 14 11.2397 0.2586 -4.0864 17 1 12.7009 -0.0058 -4.1062 18 1 10.5692 -0.5905 -5.1036 19 1 10.9914 1.6898 -4.3946 20 6 10.7131 -0.2246 0.9425 21 6 10.4339 1.2669 1.1385 22 6 5.5484 2.5897 0.0040 23 7 6.2236 3.9069 0.0095 24 8 5.5667 4.9276 0.1111 25 8 7.4360 3.9701 -0.0876 26 6 4.1730 2.5222 -0.0007 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.8118 -0.8570 0.0004 31 1 6.2646 -0.7213 -0.0012 32 1 8.1131 -0.2201 -1.0630 33 1 8.1054 -0.3938 0.7084 34 1 10.2166 -2.0578 -2.7907 35 1 10.1915 -0.9246 1.5952 36 1 11.7240 -0.5138 0.6548 37 1 11.2610 1.9589 0.9799 38 1 9.7285 1.5488 1.9202 39 1 3.5869 3.4294 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594879970.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:37 Heat of formation + Delta-G solvation = -83.147619 kcal Electronic energy + Delta-G solvation = -26831.692532 eV Core-core repulsion = 22709.045020 eV Total energy + Delta-G solvation = -4122.647512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.28140 -41.86255 -41.13848 -39.19156 -37.86792 -37.54301 -37.37986 -34.10911 -33.45001 -32.10789 -29.07635 -28.51297 -27.52783 -27.31005 -24.98740 -23.82304 -22.96275 -22.32005 -21.10428 -20.64119 -19.71752 -19.11239 -18.70413 -18.56861 -18.09457 -17.91312 -17.48101 -17.02881 -16.87608 -16.46174 -15.89305 -15.56358 -15.13993 -15.01015 -14.55496 -14.39239 -13.93460 -13.79491 -13.49806 -13.21504 -12.97753 -12.88512 -12.80761 -12.65228 -12.43961 -12.23893 -12.19048 -12.18189 -12.03812 -11.85309 -11.84490 -11.47952 -10.95319 -10.83991 -10.54751 -10.14525 -9.87229 -8.17094 -6.25156 -1.24258 -0.70976 0.15710 0.31047 1.16402 1.38900 1.42778 1.49030 1.52155 1.78133 2.18155 2.40889 3.08125 3.11888 3.33372 3.41063 3.51212 3.56909 3.67069 4.05537 4.18071 4.31054 4.34773 4.36894 4.38536 4.44914 4.60163 4.66914 4.70826 4.75551 4.78894 4.98501 5.00476 5.17466 5.18991 5.24521 5.48476 5.57731 5.76252 6.05126 6.35515 6.50414 6.52771 6.76084 7.41467 8.90428 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.003658 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.660909 B = 7651.721839 C = 8329.725060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.526 3.474 4 O -0.530 6.530 5 C -0.176 4.176 6 C 0.055 3.945 7 C -0.220 4.220 8 C 0.224 3.776 9 O -0.283 6.283 10 C 0.105 3.895 11 C 0.013 3.987 12 C -0.510 4.510 13 H 0.044 0.956 14 C 0.036 3.964 15 N -0.900 5.900 16 Si 0.940 3.060 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.280 1.280 20 C -0.154 4.154 21 C -0.181 4.181 22 C -0.117 4.117 23 N 0.040 4.960 24 O -0.175 6.175 25 O -0.180 6.180 26 C 0.048 3.952 27 H 0.138 0.862 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.198 0.802 31 H 0.177 0.823 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.919 -4.162 5.529 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.372 3.628 4 O -0.421 6.421 5 C -0.178 4.178 6 C 0.037 3.963 7 C -0.239 4.239 8 C 0.171 3.829 9 O -0.191 6.191 10 C 0.032 3.968 11 C 0.013 3.987 12 C -0.547 4.547 13 H 0.062 0.938 14 C -0.165 4.165 15 N -0.538 5.538 16 Si 0.766 3.234 17 H -0.200 1.200 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.191 4.191 21 C -0.218 4.218 22 C -0.202 4.202 23 N 0.552 4.448 24 O -0.389 6.389 25 O -0.390 6.390 26 C 0.029 3.971 27 H 0.156 0.844 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.216 0.784 31 H 0.194 0.806 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -18.346 -4.515 5.425 19.656 hybrid contribution 0.791 0.759 -1.038 1.510 sum -17.555 -3.756 4.386 18.480 Atomic orbital electron populations 1.23667 0.73600 1.06223 1.02877 1.86513 1.25636 1.30576 1.83701 1.20558 0.88011 0.82015 0.72177 1.90874 1.67048 1.36960 1.47222 1.18740 0.90524 0.93050 1.15532 1.21995 0.91672 0.99762 0.82846 1.21679 0.96574 0.95929 1.09716 1.19562 0.85077 0.92768 0.85462 1.86461 1.13121 1.37421 1.82138 1.22795 0.91517 0.81298 1.01224 1.18803 0.88519 1.01457 0.89958 1.20716 1.38200 0.98225 0.97606 0.93784 1.25463 0.95130 0.95030 1.00867 1.69950 1.46224 1.01284 1.36307 0.85823 0.78802 0.77976 0.80755 1.19976 1.20322 1.20483 1.22768 1.00780 0.93091 1.02482 1.22774 1.03132 0.94798 1.01065 1.20388 0.92827 0.80797 1.26235 1.43551 1.01204 1.02798 0.97206 1.94446 1.65712 1.25008 1.53689 1.94713 0.95914 1.94059 1.54350 1.20863 0.89544 1.00487 0.86229 0.84401 0.91564 0.91746 0.78450 0.80559 0.91038 0.90956 0.92544 0.89220 0.91000 0.90662 0.89604 0.81167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.57 113.37 1.20 1.48 16 2 O -0.35 -5.36 9.81 -56.59 -0.56 -5.91 16 3 C 0.53 10.94 7.89 70.26 0.55 11.49 16 4 O -0.53 -13.88 16.13 19.82 0.32 -13.56 16 5 C -0.18 -3.74 5.87 -20.09 -0.12 -3.86 16 6 C 0.06 0.96 9.61 22.52 0.22 1.18 16 7 C -0.22 -5.16 9.03 22.33 0.20 -4.96 16 8 C 0.22 7.28 6.67 22.64 0.15 7.43 16 9 O -0.28 -11.37 8.01 -68.98 -0.55 -11.92 16 10 C 0.11 4.24 4.57 71.98 0.33 4.57 16 11 C 0.01 0.61 1.59 -52.93 -0.08 0.52 16 12 C -0.51 -27.22 8.82 25.60 0.23 -26.99 16 13 H 0.04 2.47 7.82 -2.91 -0.02 2.45 16 14 C 0.04 1.88 5.25 84.65 0.44 2.32 16 15 N -0.90 -46.32 12.46 21.45 0.27 -46.05 16 16 Si 0.94 42.06 29.54 68.60 2.03 44.09 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 C -0.15 -6.40 9.88 30.59 0.30 -6.10 16 21 C -0.18 -7.54 9.82 30.59 0.30 -7.24 16 22 C -0.12 -3.81 6.85 36.43 0.25 -3.56 16 23 N 0.04 1.53 4.45 -46.33 -0.21 1.33 16 24 O -0.17 -6.50 18.45 18.88 0.35 -6.15 16 25 O -0.18 -8.03 17.24 25.61 0.44 -7.59 16 26 C 0.05 1.26 9.09 22.52 0.20 1.46 16 27 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.20 1.87 7.60 -2.91 -0.02 1.85 16 31 H 0.18 3.73 6.28 -2.91 -0.02 3.71 16 32 H 0.07 3.12 6.93 -2.39 -0.02 3.10 16 33 H 0.07 2.44 7.12 -2.39 -0.02 2.42 16 34 H 0.27 13.03 8.32 -92.71 -0.77 12.26 16 35 H 0.09 3.26 8.04 -2.39 -0.02 3.24 16 36 H 0.07 3.18 8.14 -2.38 -0.02 3.16 16 37 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 39 H 0.17 4.34 7.20 -2.91 -0.02 4.32 16 Total: -1.00 -65.43 351.08 7.36 -58.07 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.10 Total: 9.96 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.18 Total: -22.26 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.06 Total: -44.72 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: 0.00 Total: -45.13 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -65.43 7.36 -58.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594879970.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.082 kcal (2) G-P(sol) polarization free energy of solvation -65.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds