Wall clock time and date at job start Tue Mar 31 2020 12:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46802 * 2 1 4 4 C 1.50694 * 109.47216 * 239.99706 * 2 1 3 5 5 H 1.08008 * 119.99860 * 269.55117 * 4 2 1 6 6 C 1.37872 * 120.00132 * 89.55681 * 4 2 1 7 7 N 1.31510 * 120.00175 * 352.46216 * 6 4 2 8 8 Si 1.86802 * 120.00060 * 172.47032 * 6 4 2 9 9 H 1.48504 * 109.47278 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46682 * 299.99649 * 8 6 4 11 11 H 1.48498 * 109.47322 * 59.99207 * 8 6 4 12 12 N 1.46901 * 109.46644 * 119.99253 * 2 1 3 13 13 C 1.46896 * 111.00303 * 275.00225 * 12 2 1 14 14 H 1.09001 * 109.46984 * 35.00161 * 13 12 2 15 15 C 1.53006 * 109.46894 * 275.00260 * 13 12 2 16 16 C 1.50698 * 109.47425 * 155.00594 * 13 12 2 17 17 N 1.30390 * 126.18331 * 44.68340 * 16 13 12 18 18 N 1.28671 * 109.52004 * 179.89051 * 17 16 13 19 19 C 1.31234 * 109.24965 * 0.38704 * 18 17 16 20 20 C 1.47849 * 126.37989 * 179.76848 * 19 18 17 21 21 C 1.39580 * 120.13657 * 179.71807 * 20 19 18 22 22 C 1.37950 * 119.88047 * 179.74336 * 21 20 19 23 23 C 1.38353 * 120.15417 * 0.54056 * 22 21 20 24 24 C 1.38436 * 120.28127 * 359.73451 * 23 22 21 25 25 Cl 1.73604 * 119.94522 * 180.02562 * 24 23 22 26 26 C 1.38112 * 120.11705 * 359.97438 * 24 23 22 27 27 O 1.34411 * 126.18565 * 225.00658 * 16 13 12 28 28 H 1.09000 * 109.46949 * 61.82124 * 1 2 3 29 29 H 1.09001 * 109.46791 * 181.81831 * 1 2 3 30 30 H 1.08999 * 109.47483 * 301.82082 * 1 2 3 31 31 H 0.97000 * 119.99879 * 354.58429 * 7 6 4 32 32 H 1.00908 * 110.99817 * 151.04897 * 12 2 1 33 33 H 1.08998 * 109.47008 * 60.00216 * 15 13 12 34 34 H 1.08999 * 109.46853 * 179.97438 * 15 13 12 35 35 H 1.09001 * 109.47223 * 299.99754 * 15 13 12 36 36 H 1.07999 * 120.06138 * 0.02562 * 21 20 19 37 37 H 1.08005 * 119.92285 * 180.25512 * 22 21 20 38 38 H 1.08006 * 119.85974 * 179.71689 * 23 22 21 39 39 H 1.07997 * 120.08460 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2193 -1.7738 -1.2014 6 6 2.2535 -0.0030 -2.3929 7 7 1.8881 1.2576 -2.4752 8 14 3.0720 -0.8352 -3.8514 9 1 3.1934 0.1337 -4.9702 10 1 4.4232 -1.3085 -3.4569 11 1 2.2497 -1.9927 -4.2865 12 7 2.0196 -0.6924 1.1996 13 6 2.0823 0.2228 2.3469 14 1 1.2575 0.9331 2.2906 15 6 3.4110 0.9811 2.3224 16 6 1.9785 -0.5673 3.6260 17 7 2.6099 -1.6747 3.9001 18 7 2.2868 -2.0730 5.0802 19 6 1.4250 -1.2309 5.6003 20 6 0.8019 -1.3277 6.9375 21 6 -0.0987 -0.3501 7.3635 22 6 -0.6810 -0.4484 8.6101 23 6 -0.3659 -1.5074 9.4428 24 6 0.5309 -2.4777 9.0293 25 17 0.9195 -3.8031 10.0810 26 6 1.1160 -2.3937 7.7811 27 8 1.2138 -0.2610 4.6881 28 1 -0.3633 0.4853 -0.9059 29 1 -0.3633 -1.0272 0.0326 30 1 -0.3634 0.5418 0.8732 31 1 1.3932 1.6675 -1.7486 32 1 2.9173 -1.1204 1.0290 33 1 3.4861 1.5526 1.3973 34 1 3.4574 1.6605 3.1735 35 1 4.2359 0.2708 2.3787 36 1 -0.3427 0.4795 6.7164 37 1 -1.3811 0.3054 8.9388 38 1 -0.8211 -1.5773 10.4197 39 1 1.8158 -3.1506 7.4592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:25 Heat of formation + Delta-G solvation = 49.880399 kcal Electronic energy + Delta-G solvation = -23497.461083 eV Core-core repulsion = 19853.584014 eV Total energy + Delta-G solvation = -3643.877069 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.05389 -39.70104 -37.19007 -36.89262 -36.08159 -33.87652 -32.75535 -31.30629 -30.78539 -29.12941 -27.35553 -25.17688 -24.67904 -24.36691 -22.89745 -21.99448 -21.34262 -20.07153 -18.30643 -17.49461 -17.22327 -16.59201 -16.22728 -15.79367 -15.10988 -14.90734 -14.56000 -14.19027 -14.06896 -13.86580 -13.76180 -13.05351 -12.59099 -12.36871 -12.33547 -12.22329 -12.07502 -11.99702 -11.75012 -11.50662 -11.39100 -11.32394 -11.22410 -10.91662 -10.78988 -10.67150 -10.42015 -10.20928 -10.13360 -9.33886 -8.81147 -8.68001 -8.46173 -7.68078 -6.49224 -4.22571 0.13226 0.67297 1.52436 1.59077 2.17445 2.49616 3.19279 3.40805 3.40990 3.60049 3.63395 4.23765 4.43015 4.44912 4.51702 4.58081 4.71914 4.85901 5.03748 5.13047 5.20604 5.25292 5.29597 5.37026 5.43763 5.57897 5.65625 5.75591 5.88306 5.92296 5.95192 6.14468 6.24791 6.40349 6.64836 6.74501 6.85504 7.38547 7.66030 7.89376 8.34359 8.39682 8.44386 8.73516 9.50702 10.88489 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.029710 B = 0.002286 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.210984 B =12245.628149 C =12606.441501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.197 3.803 3 H 0.015 0.985 4 C -0.600 4.600 5 H 0.058 0.942 6 C 0.025 3.975 7 N -0.906 5.906 8 Si 1.067 2.933 9 H -0.283 1.283 10 H -0.286 1.286 11 H -0.287 1.287 12 N -0.671 5.671 13 C 0.174 3.826 14 H 0.102 0.898 15 C -0.173 4.173 16 C 0.207 3.793 17 N -0.274 5.274 18 N -0.266 5.266 19 C 0.177 3.823 20 C 0.004 3.996 21 C -0.084 4.084 22 C -0.106 4.106 23 C -0.093 4.093 24 C -0.036 4.036 25 Cl -0.059 7.059 26 C -0.064 4.064 27 O -0.221 6.221 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.013 0.987 31 H 0.270 0.730 32 H 0.352 0.648 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.894 -1.277 24.228 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.090 3.910 3 H 0.033 0.967 4 C -0.638 4.638 5 H 0.077 0.923 6 C -0.180 4.180 7 N -0.542 5.542 8 Si 0.895 3.105 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.213 1.213 12 N -0.306 5.306 13 C 0.061 3.939 14 H 0.120 0.880 15 C -0.232 4.232 16 C -0.003 4.003 17 N -0.120 5.120 18 N -0.114 5.114 19 C -0.031 4.031 20 C 0.002 3.998 21 C -0.104 4.104 22 C -0.124 4.124 23 C -0.112 4.112 24 C -0.063 4.063 25 Cl -0.030 7.030 26 C -0.084 4.084 27 O -0.100 6.100 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.173 0.827 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.103 -2.393 22.755 23.090 hybrid contribution -0.699 1.046 1.551 1.997 sum -3.802 -1.348 24.306 24.638 Atomic orbital electron populations 1.21874 0.98559 1.00035 0.98095 1.19374 0.91724 0.93321 0.86538 0.96740 1.21960 1.48892 0.96812 0.96154 0.92328 1.25855 0.95902 0.95552 1.00728 1.70814 1.35626 1.12436 1.35307 0.83566 0.76281 0.75148 0.75496 1.20825 1.21275 1.21313 1.60531 1.34262 1.31463 1.04300 1.19954 0.99282 0.91299 0.83387 0.87992 1.22478 0.96631 1.00886 1.03246 1.28647 0.87685 0.94132 0.89859 1.74427 1.22142 1.09192 1.06237 1.74706 1.11013 1.22916 1.02754 1.25102 0.98787 0.86399 0.92857 1.17021 0.98595 0.97070 0.87128 1.21420 0.94466 0.97824 0.96651 1.21062 0.99959 0.98137 0.93219 1.21284 0.96206 0.92986 1.00725 1.20699 1.00511 0.92507 0.92583 1.98395 1.93339 1.46000 1.65271 1.21040 0.98829 0.97396 0.91175 1.84810 1.55587 1.45711 1.23924 0.93234 0.93596 0.96760 0.91903 0.82694 0.89904 0.92459 0.91270 0.84256 0.83959 0.84207 0.83129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.28 37.16 0.34 -2.50 16 2 C 0.20 4.61 2.05 -68.86 -0.14 4.47 16 3 H 0.01 0.36 5.93 -51.93 -0.31 0.06 16 4 C -0.60 -15.88 8.28 -34.45 -0.29 -16.16 16 5 H 0.06 1.59 7.83 -52.48 -0.41 1.18 16 6 C 0.02 0.68 5.44 -17.82 -0.10 0.58 16 7 N -0.91 -25.77 13.55 55.43 0.75 -25.02 16 8 Si 1.07 24.20 29.91 -169.99 -5.08 19.11 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 12 N -0.67 -13.88 6.03 -102.17 -0.62 -14.50 16 13 C 0.17 3.01 2.94 -68.86 -0.20 2.81 16 14 H 0.10 1.70 7.13 -51.93 -0.37 1.33 16 15 C -0.17 -2.65 9.13 37.16 0.34 -2.31 16 16 C 0.21 3.61 7.32 -12.89 -0.09 3.52 16 17 N -0.27 -5.13 12.21 32.58 0.40 -4.74 16 18 N -0.27 -4.61 11.92 32.07 0.38 -4.22 16 19 C 0.18 2.65 7.99 -13.88 -0.11 2.54 16 20 C 0.00 0.05 5.87 -104.99 -0.62 -0.57 16 21 C -0.08 -0.74 9.73 -39.19 -0.38 -1.13 16 22 C -0.11 -0.69 10.03 -39.64 -0.40 -1.09 16 23 C -0.09 -0.63 9.82 -39.47 -0.39 -1.02 16 24 C -0.04 -0.32 6.31 -39.55 -0.25 -0.57 16 25 Cl -0.06 -0.49 28.95 -51.86 -1.50 -1.99 16 26 C -0.06 -0.67 9.48 -39.15 -0.37 -1.04 16 27 O -0.22 -3.50 10.67 4.02 0.04 -3.45 16 28 H 0.05 1.16 7.76 -51.93 -0.40 0.75 16 29 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.01 0.27 7.45 -51.93 -0.39 -0.12 16 31 H 0.27 7.57 6.45 -40.82 -0.26 7.30 16 32 H 0.35 7.46 8.09 -39.29 -0.32 7.15 16 33 H 0.08 1.35 7.43 -51.93 -0.39 0.96 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 36 H 0.14 1.11 7.93 -52.49 -0.42 0.70 16 37 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.15 1.62 7.86 -52.49 -0.41 1.21 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -29.80 352.61 -7.55 -37.35 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.58 Total: 4.62 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.65 Total: -12.48 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.92 Total: -48.47 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -5.08 Total: 19.11 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.80 -7.55 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.232 kcal (2) G-P(sol) polarization free energy of solvation -29.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds