Wall clock time and date at job start Tue Mar 31 2020 13:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99973 * 2 1 4 4 H 1.08996 * 109.47272 * 30.00139 * 3 2 1 5 5 C 1.53007 * 109.47155 * 150.00288 * 3 2 1 6 6 N 1.46503 * 109.46672 * 295.00356 * 5 3 2 7 7 C 1.35310 * 125.86801 * 125.32835 * 6 5 3 8 8 C 1.35348 * 106.17503 * 180.10838 * 7 6 5 9 9 C 1.50700 * 126.75241 * 179.84708 * 8 7 6 10 10 C 1.50702 * 109.46869 * 124.71667 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 N 1.33770 * 106.49624 * 359.59617 * 8 7 6 19 19 N 1.28632 * 108.88455 * 0.25241 * 18 8 7 20 20 C 1.50702 * 109.47139 * 269.99912 * 3 2 1 21 21 C 1.38239 * 119.98901 * 324.73118 * 20 3 2 22 22 C 1.38216 * 120.01217 * 179.72490 * 21 20 3 23 23 C 1.38354 * 119.98339 * 0.54631 * 22 21 20 24 24 Cl 1.73602 * 120.00798 * 179.74900 * 23 22 21 25 25 C 1.38348 * 119.97280 * 359.72336 * 23 22 21 26 26 C 1.38207 * 119.99300 * 0.02562 * 25 23 22 27 27 H 1.09001 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47074 * 299.99406 * 1 2 3 29 29 H 1.08996 * 109.47384 * 60.00145 * 1 2 3 30 30 H 1.08989 * 109.47010 * 175.00015 * 5 3 2 31 31 H 1.08998 * 109.47091 * 54.99690 * 5 3 2 32 32 H 1.08000 * 126.91429 * 359.96633 * 7 6 5 33 33 H 1.09004 * 109.47210 * 4.71960 * 9 8 7 34 34 H 1.08994 * 109.47551 * 244.71612 * 9 8 7 35 35 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 36 36 H 1.07999 * 119.98829 * 359.97438 * 21 20 3 37 37 H 1.08003 * 120.00645 * 180.26964 * 22 21 20 38 38 H 1.08003 * 119.99977 * 179.97438 * 25 23 22 39 39 H 1.07995 * 119.99572 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 3.3589 1.2632 0.7212 6 7 3.1477 0.9329 2.1328 7 6 3.7341 -0.0842 2.8054 8 6 3.2570 -0.0243 4.0706 9 6 3.6050 -0.9469 5.2102 10 6 4.1084 -0.1365 6.3767 11 1 4.1698 0.9391 6.3007 12 6 4.4848 -0.7676 7.5434 13 7 4.9190 -0.0600 8.5634 14 14 4.3781 -2.6279 7.6752 15 1 5.6599 -3.2301 7.2283 16 1 4.1171 -3.0100 9.0863 17 1 3.2726 -3.1225 6.8158 18 7 2.4200 1.0184 4.1119 19 7 2.3773 1.5644 2.9480 20 6 2.2145 1.7644 -1.4208 21 6 2.5649 0.8516 -2.3981 22 6 2.7469 1.2710 -3.7025 23 6 2.5893 2.6065 -4.0277 24 17 2.8241 3.1350 -5.6646 25 6 2.2441 3.5204 -3.0481 26 6 2.0573 3.0990 -1.7451 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 3.8427 2.2369 0.6443 31 1 3.9931 0.5051 0.2617 32 1 4.4391 -0.8012 2.4113 33 1 4.3801 -1.6433 4.8902 34 1 2.7177 -1.5039 5.5107 35 1 5.1841 -0.5040 9.3839 36 1 2.6926 -0.1900 -2.1431 37 1 3.0164 0.5571 -4.4668 38 1 2.1214 4.5631 -3.3014 39 1 1.7874 3.8123 -0.9805 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603234360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:21 Heat of formation + Delta-G solvation = 50.172865 kcal Electronic energy + Delta-G solvation = -23519.186887 eV Core-core repulsion = 19875.322501 eV Total energy + Delta-G solvation = -3643.864386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.03850 -40.86182 -38.90590 -37.38592 -36.13066 -35.07322 -33.23124 -32.84634 -32.07929 -30.17896 -29.41462 -27.48901 -25.52714 -24.99501 -23.83606 -22.74844 -22.30582 -21.33529 -18.91445 -18.61119 -18.10544 -17.78167 -17.34516 -16.73416 -16.26446 -16.01871 -15.84554 -15.59119 -15.45167 -15.09227 -14.50065 -14.46473 -14.38526 -14.19629 -14.02965 -13.75500 -13.24126 -12.87230 -12.80854 -12.58852 -12.40344 -12.39325 -12.35897 -12.07489 -11.88481 -11.77553 -11.60387 -11.40153 -11.04944 -10.73623 -10.70366 -10.05359 -9.83102 -9.69627 -8.22392 -6.27274 -0.01685 0.28239 0.79717 1.11489 1.42320 1.46601 1.55090 1.58356 1.78862 2.42719 2.48875 2.54298 3.11730 3.50889 3.59491 3.73648 3.78205 3.87234 3.93264 4.08292 4.28946 4.30384 4.35780 4.41935 4.44777 4.45389 4.54091 4.65540 4.77203 4.78667 4.97510 5.08674 5.13986 5.21780 5.36106 5.39407 5.40163 5.64628 5.74156 5.84019 6.00801 6.34615 6.77900 7.34270 7.73322 8.95333 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.031581 B = 0.002245 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.387176 B =12470.069778 C =12608.925207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.126 3.874 4 H 0.079 0.921 5 C 0.117 3.883 6 N -0.280 5.280 7 C -0.041 4.041 8 C -0.009 4.009 9 C 0.067 3.933 10 C -0.516 4.516 11 H 0.018 0.982 12 C 0.000 4.000 13 N -0.955 5.955 14 Si 0.959 3.041 15 H -0.256 1.256 16 H -0.288 1.288 17 H -0.242 1.242 18 N -0.309 5.309 19 N -0.120 5.120 20 C -0.113 4.113 21 C -0.078 4.078 22 C -0.115 4.115 23 C -0.039 4.039 24 Cl -0.073 7.073 25 C -0.115 4.115 26 C -0.094 4.094 27 H 0.098 0.902 28 H 0.031 0.969 29 H 0.057 0.943 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.228 0.772 33 H 0.059 0.941 34 H 0.033 0.967 35 H 0.266 0.734 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 0.908 -32.662 33.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.305 6.305 3 C 0.067 3.933 4 H 0.097 0.903 5 C -0.003 4.003 6 N -0.075 5.075 7 C -0.192 4.192 8 C -0.147 4.147 9 C 0.028 3.972 10 C -0.554 4.554 11 H 0.037 0.963 12 C -0.196 4.196 13 N -0.596 5.596 14 Si 0.781 3.219 15 H -0.180 1.180 16 H -0.214 1.214 17 H -0.166 1.166 18 N -0.175 5.175 19 N -0.099 5.099 20 C -0.114 4.114 21 C -0.096 4.096 22 C -0.134 4.134 23 C -0.065 4.065 24 Cl -0.044 7.044 25 C -0.134 4.134 26 C -0.112 4.112 27 H 0.117 0.883 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.244 0.756 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.166 0.834 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.903 1.983 -32.516 33.107 hybrid contribution 0.546 -0.698 0.389 0.968 sum -5.356 1.284 -32.127 32.596 Atomic orbital electron populations 1.22882 0.79542 1.03805 1.00205 1.87884 1.21260 1.26448 1.94869 1.21097 0.94204 0.86227 0.91817 0.90256 1.22607 0.98246 1.06639 0.72778 1.47369 1.28752 1.19884 1.11496 1.23776 1.05386 0.97595 0.92408 1.22352 0.98383 0.97747 0.96225 1.17962 0.96919 0.92941 0.89415 1.21133 1.42611 0.93453 0.98216 0.96338 1.26089 0.94080 1.04704 0.94701 1.70091 1.46095 1.38441 1.04983 0.85544 0.80422 0.78230 0.77736 1.18005 1.21378 1.16574 1.74993 1.20242 1.09463 1.12851 1.78010 1.15244 1.20994 0.95615 1.20155 1.02066 0.94366 0.94817 1.21102 0.96519 1.00707 0.91299 1.21274 1.00439 0.94098 0.97548 1.21200 1.04042 0.95014 0.86256 1.98385 1.95375 1.90699 1.19937 1.21222 0.99859 1.00432 0.91838 1.21205 0.98343 0.95265 0.96436 0.88328 0.95008 0.92478 0.85350 0.84068 0.75580 0.92279 0.94912 0.92491 0.83572 0.83399 0.83438 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.81 113.37 1.23 1.78 16 2 O -0.39 -7.60 9.45 -148.98 -1.41 -9.01 16 3 C 0.13 2.14 2.40 29.85 0.07 2.21 16 4 H 0.08 1.56 7.55 -2.39 -0.02 1.54 16 5 C 0.12 2.07 6.10 86.38 0.53 2.60 16 6 N -0.28 -8.35 3.39 -347.73 -1.18 -9.53 16 7 C -0.04 -1.34 11.49 83.49 0.96 -0.38 16 8 C -0.01 -0.38 6.44 41.60 0.27 -0.12 16 9 C 0.07 3.22 4.62 29.10 0.13 3.35 16 10 C -0.52 -31.16 9.64 25.60 0.25 -30.91 16 11 H 0.02 1.28 7.98 -2.91 -0.02 1.25 16 12 C 0.00 0.01 5.47 84.66 0.46 0.47 16 13 N -0.96 -61.72 13.96 21.45 0.30 -61.42 16 14 Si 0.96 43.79 27.47 68.60 1.88 45.68 16 15 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 18 N -0.31 -14.87 12.40 -48.60 -0.60 -15.47 16 19 N -0.12 -4.69 12.82 37.02 0.47 -4.21 16 20 C -0.11 -1.50 4.96 -19.86 -0.10 -1.59 16 21 C -0.08 -0.94 9.35 22.26 0.21 -0.73 16 22 C -0.12 -1.34 9.83 22.29 0.22 -1.12 16 23 C -0.04 -0.50 6.32 22.32 0.14 -0.36 16 24 Cl -0.07 -0.95 28.96 -2.72 -0.08 -1.03 16 25 C -0.11 -1.36 9.83 22.29 0.22 -1.14 16 26 C -0.09 -1.13 9.68 22.26 0.22 -0.92 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 0.65 8.09 -2.38 -0.02 0.63 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.14 1.69 8.07 -2.39 -0.02 1.67 16 32 H 0.23 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.06 2.49 7.56 -2.38 -0.02 2.47 16 34 H 0.03 1.59 7.19 -2.39 -0.02 1.57 16 35 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 36 H 0.15 1.57 7.64 -2.91 -0.02 1.54 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -80.21 355.18 5.20 -75.01 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 1.00 Total: 6.84 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 4.80 Total: -26.86 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -1.01 Total: -90.64 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -1.41 Total: -9.01 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.68 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -80.21 5.20 -75.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603234360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.183 kcal (2) G-P(sol) polarization free energy of solvation -80.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds