Wall clock time and date at job start Tue Mar 31 2020 12:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46661 * 2 1 4 4 C 1.53004 * 109.46787 * 119.99651 * 2 1 3 5 5 C 1.50703 * 109.46676 * 184.99868 * 4 2 1 6 6 C 1.38419 * 122.54129 * 269.73468 * 5 4 2 7 7 C 1.33395 * 114.91930 * 179.76223 * 6 5 4 8 8 S 1.75883 * 109.59252 * 0.47943 * 7 6 5 9 9 C 1.33389 * 122.53435 * 90.03192 * 5 4 2 10 10 N 1.46494 * 109.47022 * 239.99776 * 2 1 3 11 11 C 1.39932 * 120.00098 * 85.00484 * 10 2 1 12 12 C 1.38713 * 120.07753 * 359.97438 * 11 10 2 13 13 C 1.38209 * 120.02003 * 179.97438 * 12 11 10 14 14 C 1.38538 * 120.17023 * 0.28035 * 13 12 11 15 15 F 1.35099 * 119.91804 * 179.72524 * 14 13 12 16 16 C 1.38350 * 120.15797 * 359.44236 * 14 13 12 17 17 C 1.38719 * 119.98208 * 0.55882 * 16 14 13 18 18 O 1.35801 * 120.08570 * 179.74288 * 17 16 14 19 19 C 1.34800 * 117.00396 * 354.40093 * 18 17 16 20 20 H 1.08006 * 119.99762 * 5.05961 * 19 18 17 21 21 C 1.38629 * 120.00195 * 185.06333 * 19 18 17 22 22 N 1.31578 * 119.99748 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99943 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47019 * 89.99957 * 23 21 19 25 25 H 1.48500 * 109.47000 * 210.00365 * 23 21 19 26 26 H 1.48505 * 109.46987 * 330.00142 * 23 21 19 27 27 H 1.09004 * 109.47088 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47370 * 299.99848 * 1 2 3 29 29 H 1.08997 * 109.46927 * 60.00511 * 1 2 3 30 30 H 1.08999 * 109.47280 * 305.00309 * 4 2 1 31 31 H 1.09000 * 109.46991 * 65.00126 * 4 2 1 32 32 H 1.08003 * 122.54060 * 0.02562 * 6 5 4 33 33 H 1.07993 * 125.20316 * 180.21105 * 7 6 5 34 34 H 1.07998 * 125.20523 * 0.02562 * 9 5 4 35 35 H 0.97001 * 120.00014 * 264.99642 * 10 2 1 36 36 H 1.08008 * 119.99262 * 0.02562 * 12 11 10 37 37 H 1.07992 * 119.91755 * 180.02562 * 13 12 11 38 38 H 1.08003 * 120.01017 * 180.27315 * 16 14 13 39 39 H 0.97001 * 119.99477 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 6 4.3798 -1.5550 0.7382 7 6 5.6830 -1.3085 0.8814 8 16 5.9052 0.1763 1.7977 9 6 4.1645 0.3893 1.9319 10 7 2.0183 -0.6906 -1.1961 11 6 2.1521 0.0074 -2.4015 12 6 1.8222 1.3532 -2.4658 13 6 1.9553 2.0416 -3.6568 14 6 2.4123 1.3896 -4.7905 15 9 2.5352 2.0662 -5.9535 16 6 2.7488 0.0489 -4.7332 17 6 2.6177 -0.6483 -3.5412 18 8 2.9424 -1.9657 -3.4838 19 6 3.2749 -2.5653 -4.6445 20 1 3.3542 -1.9821 -5.5501 21 6 3.5149 -3.9303 -4.6757 22 7 3.4177 -4.6407 -3.5725 23 14 3.9749 -4.7611 -6.2843 24 1 5.4513 -4.7492 -6.4431 25 1 3.4894 -6.1645 -6.2730 26 1 3.3495 -4.0300 -7.4156 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.6053 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2057 32 1 4.0068 -2.4201 0.2101 33 1 6.4796 -1.9284 0.4976 34 1 3.6746 1.2078 2.4384 35 1 2.2491 -1.6318 -1.1525 36 1 1.4621 1.8635 -1.5846 37 1 1.6984 3.0894 -3.7049 38 1 3.1090 -0.4559 -5.6174 39 1 3.5853 -5.5959 -3.5944 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783589619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:11 Heat of formation + Delta-G solvation = -15.413549 kcal Electronic energy + Delta-G solvation = -24544.683505 eV Core-core repulsion = 20880.098823 eV Total energy + Delta-G solvation = -3664.584682 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.094 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.02437 -39.39244 -38.41179 -36.66449 -35.30608 -32.32982 -31.66217 -29.58574 -29.25135 -27.25183 -26.74280 -25.36175 -23.09794 -22.33342 -21.31642 -20.18854 -18.61609 -18.15967 -17.73730 -17.31027 -16.19220 -15.86816 -15.17874 -15.09456 -14.81677 -14.56504 -14.20595 -13.87338 -13.66914 -13.41198 -13.26471 -12.95346 -12.82622 -12.60367 -12.48014 -12.19937 -12.09865 -11.81650 -11.59524 -11.56002 -11.24682 -11.18870 -10.93912 -10.77118 -10.56228 -10.51600 -10.32558 -9.56821 -9.24389 -8.85121 -8.59808 -8.18928 -7.71296 -6.48757 -6.39753 -4.02679 1.19416 1.84139 2.14901 2.15226 2.26994 2.92599 3.11692 3.13736 3.17856 3.92618 4.03358 4.49372 4.90458 5.00382 5.05978 5.09630 5.12903 5.30910 5.32532 5.45130 5.59028 5.64149 5.71345 5.78035 5.81652 5.87980 5.92635 6.10447 6.15321 6.29094 6.40739 6.49877 6.60000 6.61498 6.70472 6.84182 7.05518 7.12828 7.26628 7.65010 7.93742 8.08465 8.46191 8.98818 9.65499 10.69414 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.004961 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.669720 B = 5642.995714 C = 7120.885224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.161 3.839 3 H 0.074 0.926 4 C -0.069 4.069 5 C -0.085 4.085 6 C -0.116 4.116 7 C -0.204 4.204 8 S 0.067 5.933 9 C -0.219 4.219 10 N -0.735 5.735 11 C 0.161 3.839 12 C -0.149 4.149 13 C -0.194 4.194 14 C 0.083 3.917 15 F -0.159 7.159 16 C -0.241 4.241 17 C 0.120 3.880 18 O -0.176 6.176 19 C -0.385 4.385 20 H 0.090 0.910 21 C 0.041 3.959 22 N -0.864 5.864 23 Si 0.938 3.062 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.267 1.267 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.407 0.593 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.137 0.863 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 7.703 10.873 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.054 3.946 3 H 0.092 0.908 4 C -0.109 4.109 5 C -0.098 4.098 6 C -0.146 4.146 7 C -0.339 4.339 8 S 0.330 5.670 9 C -0.354 4.354 10 N -0.368 5.368 11 C 0.059 3.941 12 C -0.173 4.173 13 C -0.214 4.214 14 C 0.062 3.938 15 F -0.138 7.138 16 C -0.262 4.262 17 C 0.065 3.935 18 O -0.080 6.080 19 C -0.461 4.461 20 H 0.108 0.892 21 C -0.163 4.163 22 N -0.500 5.500 23 Si 0.763 3.237 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.162 0.838 33 H 0.180 0.820 34 H 0.177 0.823 35 H 0.243 0.757 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.154 0.846 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.215 8.232 11.722 14.325 hybrid contribution -0.776 -1.384 -1.721 2.341 sum -0.562 6.848 10.001 12.133 Atomic orbital electron populations 1.22330 0.96333 1.02452 1.01739 1.20719 0.92873 0.96576 0.84450 0.90819 1.20659 0.90096 1.02234 0.97953 1.18842 0.96757 0.94954 0.99237 1.20211 0.92251 1.01186 1.00983 1.25556 1.00619 1.00915 1.06808 1.84078 1.05827 1.22838 1.54242 1.25314 0.96027 1.04376 1.09676 1.44379 1.74197 1.12534 1.05711 1.17066 1.00540 0.91233 0.85243 1.19946 1.07905 0.91877 0.97547 1.20293 1.09303 0.99659 0.92171 1.17227 1.04938 0.90284 0.81367 1.91373 1.94440 1.80329 1.47620 1.20789 1.12123 0.93341 0.99953 1.18590 0.96925 0.86392 0.91563 1.83882 1.74473 1.15984 1.33695 1.21269 1.47469 0.91376 0.85972 0.89243 1.25197 0.96970 0.95172 0.98963 1.70013 1.45817 1.07406 1.26718 0.85752 0.78946 0.78664 0.80373 1.19949 1.20311 1.19194 0.92282 0.92486 0.91963 0.89985 0.90240 0.83786 0.82043 0.82325 0.75701 0.86166 0.86689 0.84578 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.43 37.16 0.35 -1.63 16 2 C 0.16 2.09 2.26 -67.93 -0.15 1.94 16 3 H 0.07 0.96 6.49 -51.93 -0.34 0.62 16 4 C -0.07 -0.79 5.01 -27.88 -0.14 -0.93 16 5 C -0.09 -1.13 4.83 -106.25 -0.51 -1.64 16 6 C -0.12 -1.75 9.55 -41.21 -0.39 -2.14 16 7 C -0.20 -2.91 11.23 29.04 0.33 -2.58 16 8 S 0.07 0.84 23.34 -107.50 -2.51 -1.67 16 9 C -0.22 -2.66 10.98 29.04 0.32 -2.34 16 10 N -0.73 -12.67 4.77 -51.99 -0.25 -12.91 16 11 C 0.16 3.19 6.66 -83.52 -0.56 2.63 16 12 C -0.15 -2.63 8.85 -39.42 -0.35 -2.98 16 13 C -0.19 -3.54 10.02 -39.48 -0.40 -3.94 16 14 C 0.08 1.70 7.29 -39.43 -0.29 1.41 16 15 F -0.16 -3.19 17.26 2.25 0.04 -3.15 16 16 C -0.24 -5.44 9.14 -39.36 -0.36 -5.80 16 17 C 0.12 2.81 6.67 -38.94 -0.26 2.55 16 18 O -0.18 -4.67 9.00 -0.02 0.00 -4.67 16 19 C -0.38 -10.40 9.49 30.88 0.29 -10.11 16 20 H 0.09 2.31 5.21 -52.48 -0.27 2.04 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -23.97 13.67 55.48 0.76 -23.21 16 23 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.80 7.71 -51.93 -0.40 0.40 16 30 H 0.08 0.75 8.12 -51.93 -0.42 0.32 16 31 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.14 2.33 7.91 -52.48 -0.42 1.91 16 33 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 34 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.41 7.74 7.61 -40.82 -0.31 7.43 16 36 H 0.12 1.78 6.12 -52.48 -0.32 1.46 16 37 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.14 3.13 5.64 -52.48 -0.30 2.84 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -28.71 347.52 -8.41 -37.12 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.45 Total: 12.55 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: -2.22 Total: -24.57 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.51 Total: -36.12 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.00 Total: -4.67 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.51 Total: -1.67 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.71 -8.41 -37.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783589619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.702 kcal (2) G-P(sol) polarization free energy of solvation -28.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds