Wall clock time and date at job start Tue Mar 31 2020 12:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47175 * 2 1 4 4 C 1.53004 * 109.46731 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46879 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00213 * 275.77876 * 5 4 3 7 7 H 1.08005 * 119.99406 * 35.45936 * 6 5 4 8 8 C 1.38807 * 120.00255 * 215.46581 * 6 5 4 9 9 N 1.31621 * 119.99843 * 23.27066 * 8 6 5 10 10 Si 1.86799 * 120.00013 * 203.27275 * 8 6 5 11 11 H 1.48501 * 109.46823 * 89.99839 * 10 8 6 12 12 H 1.48495 * 109.47303 * 209.99945 * 10 8 6 13 13 H 1.48496 * 109.47103 * 329.99926 * 10 8 6 14 14 C 1.46504 * 120.00129 * 95.77873 * 5 4 3 15 15 C 1.50704 * 109.46933 * 269.99975 * 14 5 4 16 16 C 1.33586 * 125.09719 * 90.00320 * 15 14 5 17 17 C 1.37976 * 115.08450 * 179.97438 * 16 15 14 18 18 C 1.35033 * 114.65068 * 0.02562 * 17 16 15 19 19 C 1.47257 * 125.28534 * 179.97438 * 18 17 16 20 20 C 1.35033 * 125.28534 * 179.97438 * 19 18 17 21 21 C 1.37973 * 114.64796 * 179.73524 * 20 19 18 22 22 C 1.33580 * 115.08850 * 359.97438 * 21 20 19 23 23 S 1.75848 * 109.80592 * 0.02562 * 22 21 20 24 24 S 1.75856 * 125.09632 * 270.26169 * 15 14 5 25 25 H 1.09004 * 109.46859 * 59.99831 * 1 2 3 26 26 H 1.08994 * 109.47473 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46922 * 300.00291 * 1 2 3 28 28 H 1.09008 * 109.46549 * 239.99847 * 2 1 3 29 29 H 1.08996 * 109.46749 * 120.00514 * 2 1 3 30 30 H 1.08997 * 109.47040 * 60.00309 * 3 2 1 31 31 H 1.09004 * 109.47365 * 299.99859 * 3 2 1 32 32 H 1.08997 * 109.47344 * 60.00204 * 4 3 2 33 33 H 1.09004 * 109.46843 * 299.99887 * 4 3 2 34 34 H 0.97008 * 119.99608 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47002 * 150.00167 * 14 5 4 36 36 H 1.08998 * 109.47210 * 29.99529 * 14 5 4 37 37 H 1.08003 * 122.45679 * 0.02562 * 16 15 14 38 38 H 1.08007 * 122.67479 * 179.97438 * 17 16 15 39 39 H 1.08002 * 122.67349 * 359.74971 * 20 19 18 40 40 H 1.08005 * 122.45475 * 179.97438 * 21 20 19 41 41 H 1.08001 * 125.09520 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.1737 3.5096 -1.1795 7 1 3.4538 3.3510 -1.9689 8 6 5.2156 4.4087 -1.3606 9 7 6.3178 4.2903 -0.6511 10 14 5.0534 5.7867 -2.6113 11 1 4.4649 6.9826 -1.9565 12 1 6.3948 6.1270 -3.1497 13 1 4.1715 5.3461 -3.7218 14 6 4.4237 3.4709 1.2625 15 6 3.2162 4.1640 1.8393 16 6 2.3373 3.6062 2.6766 17 6 1.3068 4.4312 3.0778 18 6 1.3481 5.6772 2.5588 19 6 0.3692 6.7438 2.8280 20 6 0.4108 7.9898 2.3094 21 6 -0.6233 8.8128 2.7056 22 6 -1.5052 8.2533 3.5384 23 16 -1.0404 6.5899 3.8688 24 16 2.7492 5.8263 1.5059 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9331 0.9287 -0.8908 33 1 3.9337 0.9283 0.8892 34 1 7.0458 4.9189 -0.7774 35 1 5.2107 4.2029 1.0812 36 1 4.7816 2.7192 1.9660 37 1 2.4274 2.5846 3.0153 38 1 0.5285 4.1062 3.7524 39 1 1.1913 8.3161 1.6379 40 1 -0.7131 9.8346 2.3672 41 1 -2.3731 8.7487 3.9481 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139022398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:10 Heat of formation + Delta-G solvation = 57.424343 kcal Electronic energy + Delta-G solvation = -22088.238071 eV Core-core repulsion = 18993.025053 eV Total energy + Delta-G solvation = -3095.213018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 321.092 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.30045 -38.59881 -37.52229 -35.57681 -33.43220 -32.43462 -30.21766 -29.01430 -27.09549 -25.75809 -24.50322 -23.75019 -22.49831 -21.71676 -20.51303 -20.34946 -18.84084 -17.83008 -17.36484 -16.76099 -16.34297 -16.26165 -15.67402 -15.49087 -15.29148 -14.74749 -14.54809 -13.95648 -13.86285 -13.79937 -13.59977 -13.46532 -13.39805 -13.18599 -13.02370 -12.83871 -12.73850 -12.41020 -12.20172 -12.09450 -11.99139 -11.83884 -11.76546 -11.61041 -11.39186 -11.27614 -10.54617 -10.38927 -9.46609 -9.36229 -8.72272 -8.63812 -7.89949 -5.45821 -0.57479 0.27659 0.62356 0.95306 1.08960 1.37148 1.41193 1.45234 1.49702 1.69761 2.12178 2.46847 3.18746 3.68296 3.72693 4.16887 4.18700 4.20952 4.34782 4.43831 4.44339 4.56594 4.57321 4.62864 4.68504 4.80904 4.91327 5.02734 5.06586 5.07798 5.09706 5.20127 5.21120 5.32009 5.37205 5.42631 5.50107 5.52838 5.57344 5.66327 5.68643 5.77776 6.41086 7.10629 7.79536 8.31502 9.06664 Molecular weight = 321.09amu Principal moments of inertia in cm(-1) A = 0.010404 B = 0.004889 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.564702 B = 5725.184095 C = 7458.963462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.126 4.126 4 C 0.147 3.853 5 N -0.585 5.585 6 C -0.256 4.256 7 H 0.049 0.951 8 C -0.021 4.021 9 N -0.908 5.908 10 Si 0.929 3.071 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.271 1.271 14 C 0.203 3.797 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.115 4.115 18 C -0.156 4.156 19 C -0.125 4.125 20 C -0.154 4.154 21 C -0.136 4.136 22 C -0.211 4.211 23 S 0.139 5.861 24 S 0.095 5.905 25 H 0.043 0.957 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.129 0.871 40 H 0.165 0.835 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.838 2.037 9.925 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.165 4.165 4 C 0.022 3.978 5 N -0.304 5.304 6 C -0.386 4.386 7 H 0.067 0.933 8 C -0.219 4.219 9 N -0.551 5.551 10 Si 0.758 3.242 11 H -0.209 1.209 12 H -0.216 1.216 13 H -0.196 1.196 14 C 0.075 3.925 15 C -0.273 4.273 16 C -0.182 4.182 17 C -0.148 4.148 18 C -0.275 4.275 19 C -0.243 4.243 20 C -0.186 4.186 21 C -0.166 4.166 22 C -0.347 4.347 23 S 0.403 5.597 24 S 0.360 5.640 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.146 0.854 40 H 0.182 0.818 41 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.659 2.096 9.871 17.796 hybrid contribution 0.460 0.895 -1.042 1.449 sum -14.199 2.992 8.829 16.986 Atomic orbital electron populations 1.21722 0.95325 1.01899 1.01324 1.21445 0.96250 0.95786 1.01944 1.22036 0.97293 0.96693 1.00511 1.21030 0.92865 0.84930 0.98972 1.43941 1.75513 1.09467 1.01510 1.19061 1.05488 1.20047 0.94038 0.93338 1.25526 0.93921 1.02668 0.99813 1.70086 1.03923 1.36734 1.44372 0.85841 0.77014 0.81250 0.80132 1.20868 1.21555 1.19608 1.19472 0.91158 0.95997 0.85902 1.26036 1.04665 0.95689 1.00876 1.19969 0.95229 1.01619 1.01431 1.20396 1.00366 0.91855 1.02170 1.22235 1.01260 0.97421 1.06556 1.22310 1.00117 0.96210 1.05700 1.20603 1.01762 0.92917 1.03363 1.20202 0.94249 1.02217 0.99896 1.26103 1.05919 0.97094 1.05537 1.83932 1.17969 1.12321 1.45512 1.84516 1.20454 1.13414 1.45584 0.93774 0.91401 0.92932 0.92447 0.91276 0.92545 0.95174 0.94897 0.93091 0.93662 0.90656 0.92450 0.83232 0.82965 0.85363 0.81776 0.78417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.91 71.98 0.71 -2.72 16 2 C -0.12 -3.16 5.93 30.60 0.18 -2.97 16 3 C -0.13 -4.42 5.50 30.59 0.17 -4.26 16 4 C 0.15 5.95 5.72 86.38 0.49 6.45 16 5 N -0.59 -28.12 2.43 -706.32 -1.72 -29.84 16 6 C -0.26 -13.73 9.46 84.03 0.79 -12.93 16 7 H 0.05 2.69 7.93 -2.91 -0.02 2.67 16 8 C -0.02 -1.14 4.93 84.86 0.42 -0.72 16 9 N -0.91 -51.41 11.44 21.65 0.25 -51.16 16 10 Si 0.93 44.29 29.61 68.60 2.03 46.32 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 14 C 0.20 9.29 5.82 85.63 0.50 9.79 16 15 C -0.15 -6.14 6.06 24.63 0.15 -5.99 16 16 C -0.15 -5.25 8.42 21.15 0.18 -5.07 16 17 C -0.12 -3.67 9.88 21.47 0.21 -3.46 16 18 C -0.16 -5.35 6.41 23.91 0.15 -5.20 16 19 C -0.12 -3.73 6.41 23.91 0.15 -3.57 16 20 C -0.15 -4.32 9.88 21.47 0.21 -4.11 16 21 C -0.14 -2.87 10.16 21.15 0.21 -2.66 16 22 C -0.21 -3.84 11.22 66.76 0.75 -3.09 16 23 S 0.14 3.09 22.89 -56.49 -1.29 1.80 16 24 S 0.10 3.85 22.87 -56.49 -1.29 2.55 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.54 8.14 -2.38 -0.02 1.53 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 2.01 6.39 -2.39 -0.02 2.00 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16 33 H 0.05 1.88 7.83 -2.39 -0.02 1.86 16 34 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 35 H 0.08 3.98 5.44 -2.39 -0.01 3.97 16 36 H 0.06 2.45 7.85 -2.39 -0.02 2.43 16 37 H 0.15 4.52 8.04 -2.91 -0.02 4.49 16 38 H 0.15 3.97 7.89 -2.91 -0.02 3.95 16 39 H 0.13 3.76 7.89 -2.91 -0.02 3.73 16 40 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 41 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -60.40 366.90 4.27 -56.12 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.01 Total: 14.72 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 5.29 Total: -40.52 kcal Atomic # 7 Polarization: -79.52 SS G_CDS: -1.47 Total: -80.99 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 6.94 SS G_CDS: -2.59 Total: 4.35 kcal Total: -60.40 4.27 -56.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139022398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.546 kcal (2) G-P(sol) polarization free energy of solvation -60.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds