Wall clock time and date at job start Tue Mar 31 2020 12:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36553 * 126.44964 * 2 1 4 4 C 1.47577 * 125.91653 * 359.95893 * 3 2 1 5 5 O 1.21593 * 120.00079 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99657 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99665 * 179.72390 * 6 4 3 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 C 1.52997 * 109.47000 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.46940 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00213 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00116 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00201 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47129 * 60.00316 * 14 12 10 16 16 H 1.48498 * 109.47276 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47240 * 300.00255 * 14 12 10 18 18 N 1.34617 * 108.16618 * 180.22142 * 3 2 1 19 19 C 1.32261 * 109.02484 * 359.59679 * 18 3 2 20 20 C 1.41132 * 132.03566 * 180.13592 * 19 18 3 21 21 C 1.36041 * 119.33503 * 180.31524 * 20 19 18 22 22 Cl 1.73604 * 120.15095 * 180.02562 * 21 20 19 23 23 C 1.40694 * 119.69867 * 359.97438 * 21 20 19 24 24 C 1.34803 * 120.32528 * 359.97438 * 23 21 20 25 25 N 1.36253 * 126.45408 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47142 * 90.02228 * 1 2 3 27 27 H 1.08996 * 109.47078 * 210.02834 * 1 2 3 28 28 H 1.09006 * 109.46806 * 330.02287 * 1 2 3 29 29 H 0.97001 * 120.00485 * 0.02562 * 6 4 3 30 30 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 31 31 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 32 32 H 1.08995 * 109.46638 * 300.00121 * 8 7 6 33 33 H 1.09006 * 109.47139 * 60.00254 * 8 7 6 34 34 H 1.08995 * 109.47672 * 299.99669 * 9 8 7 35 35 H 1.09007 * 109.47288 * 60.00489 * 9 8 7 36 36 H 0.97000 * 120.00572 * 179.97438 * 13 12 10 37 37 H 1.07997 * 120.33126 * 0.32871 * 20 19 18 38 38 H 1.07999 * 119.83596 * 180.02562 * 23 21 20 39 39 H 1.08005 * 119.67385 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3183 1.0984 0.0000 4 6 1.8712 2.5048 -0.0009 5 8 0.6835 2.7652 -0.0021 6 7 2.7795 3.5006 -0.0002 7 6 2.3357 4.8967 -0.0072 8 6 3.5560 5.8197 -0.0119 9 6 3.0925 7.2778 -0.0198 10 6 4.2944 8.1869 -0.0238 11 1 5.2893 7.7668 -0.0214 12 6 4.1239 9.5551 -0.0306 13 7 2.9125 10.0668 -0.0330 14 14 5.6137 10.6820 -0.0363 15 1 6.4307 10.4164 -1.2476 16 1 5.1639 12.0972 -0.0426 17 1 6.4310 10.4282 1.1774 18 7 3.5965 0.6761 -0.0049 19 6 3.6137 -0.6464 0.0008 20 6 4.6740 -1.5777 0.0017 21 6 4.3922 -2.9086 0.0018 22 17 5.6801 -4.0727 0.0036 23 6 3.0521 -3.3373 0.0015 24 6 2.0493 -2.4365 0.0017 25 7 2.3166 -1.0959 0.0005 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8897 0.5143 28 1 -0.3633 0.8903 0.5135 29 1 3.7270 3.2929 0.0004 30 1 1.7359 5.0830 -0.8982 31 1 1.7361 5.0919 0.8818 32 1 4.1557 5.6335 0.8789 33 1 4.1557 5.6247 -0.9010 34 1 2.4930 7.4637 -0.9109 35 1 2.4926 7.4732 0.8691 36 1 2.7924 11.0293 -0.0373 37 1 5.6989 -1.2373 0.0025 38 1 2.8258 -4.3934 0.0020 39 1 1.0244 -2.7773 0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155474977.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:19 Heat of formation + Delta-G solvation = 27.294371 kcal Electronic energy + Delta-G solvation = -22994.931229 eV Core-core repulsion = 19350.074756 eV Total energy + Delta-G solvation = -3644.856472 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.36106 -39.45419 -38.08182 -36.75217 -35.43460 -34.40791 -33.25045 -31.63286 -31.22504 -30.51394 -27.42919 -26.66099 -24.91857 -23.24787 -22.94198 -21.86577 -20.66049 -19.89341 -18.12570 -17.63995 -17.17825 -16.69056 -16.33741 -15.90296 -15.50785 -15.18057 -15.13364 -14.42156 -14.09417 -13.94137 -13.60667 -13.53914 -13.47160 -13.03444 -12.71711 -12.61268 -12.23915 -12.07876 -11.80235 -11.65061 -11.61300 -10.85349 -10.83669 -10.75400 -10.64648 -10.59920 -10.02427 -9.81536 -9.37834 -9.35841 -9.09731 -8.73590 -8.33427 -8.22625 -5.98346 -4.01103 0.01978 0.58757 1.39393 1.77308 1.92725 2.77055 3.32359 3.35221 3.39536 3.42292 3.45681 3.63616 3.98315 4.05549 4.33600 4.47703 4.55104 4.62139 4.87139 4.88884 5.13496 5.29975 5.34539 5.37333 5.48393 5.71855 5.75572 5.79975 5.82122 6.05176 6.20798 6.44674 6.51951 6.64935 6.87579 7.04370 7.20356 7.67250 7.77995 7.80252 8.00601 8.34741 8.42718 9.05300 9.62779 11.12914 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.002116 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.054766 B =13231.251120 C =14625.237910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.022 3.978 3 C 0.012 3.988 4 C 0.594 3.406 5 O -0.537 6.537 6 N -0.705 5.705 7 C 0.116 3.884 8 C -0.122 4.122 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 N -0.449 5.449 19 C 0.226 3.774 20 C -0.056 4.056 21 C -0.025 4.025 22 Cl -0.044 7.044 23 C -0.135 4.135 24 C 0.076 3.924 25 N -0.369 5.369 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.408 0.592 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -33.084 0.129 33.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C -0.121 4.121 4 C 0.378 3.622 5 O -0.415 6.415 6 N -0.355 5.355 7 C -0.006 4.006 8 C -0.160 4.160 9 C -0.013 4.013 10 C -0.560 4.560 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.534 5.534 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 N -0.170 5.170 19 C -0.019 4.019 20 C -0.077 4.077 21 C -0.057 4.057 22 Cl -0.015 7.015 23 C -0.157 4.157 24 C -0.045 4.045 25 N -0.043 5.043 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.243 0.757 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.182 0.818 38 H 0.179 0.821 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.480 -32.208 0.122 32.243 hybrid contribution 0.844 -0.148 -0.018 0.857 sum -0.636 -32.356 0.105 32.363 Atomic orbital electron populations 1.20503 0.84878 1.04683 1.03874 1.21306 0.95088 0.83777 1.09237 1.20631 0.88679 0.94447 1.08378 1.16831 0.85745 0.82478 0.77154 1.90766 1.15945 1.83545 1.51243 1.46036 1.10166 1.06647 1.72631 1.21727 0.98827 0.77871 1.02181 1.21901 0.95314 0.97643 1.01109 1.19027 0.96830 0.87814 0.97651 1.21178 0.92846 0.91103 1.50881 0.92665 1.25027 0.95782 0.98363 0.95319 1.69953 1.20723 1.12073 1.50603 0.86639 0.82998 0.79633 0.78603 1.20245 1.21310 1.20250 1.70861 1.20497 1.06045 1.19606 1.20487 0.83198 0.90642 1.07600 1.20125 0.98747 0.88871 0.99993 1.20489 0.89933 0.90283 1.05044 1.98408 1.48634 1.57787 1.96713 1.20647 0.89637 1.00925 1.04470 1.21585 1.01504 0.79925 1.01461 1.42746 1.08892 1.05759 1.46868 0.90012 0.91659 0.87220 0.75713 0.91462 0.91453 0.92594 0.92605 0.96243 0.96242 0.92908 0.81817 0.82059 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.72 36.01 0.35 -0.38 16 2 C 0.02 0.26 7.06 -81.24 -0.57 -0.31 16 3 C 0.01 0.17 6.94 -83.44 -0.58 -0.41 16 4 C 0.59 9.70 7.82 -12.45 -0.10 9.61 16 5 O -0.54 -9.74 14.73 5.28 0.08 -9.66 16 6 N -0.71 -11.44 5.55 -61.33 -0.34 -11.78 16 7 C 0.12 2.12 5.67 -4.04 -0.02 2.09 16 8 C -0.12 -2.47 5.27 -26.73 -0.14 -2.61 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 N -0.45 -6.23 11.01 -9.36 -0.10 -6.33 16 19 C 0.23 2.57 7.79 -156.04 -1.22 1.35 16 20 C -0.06 -0.48 9.88 -39.27 -0.39 -0.87 16 21 C -0.02 -0.17 6.33 -39.44 -0.25 -0.42 16 22 Cl -0.04 -0.27 28.97 -51.86 -1.50 -1.78 16 23 C -0.14 -0.68 9.79 -39.87 -0.39 -1.07 16 24 C 0.08 0.45 10.82 -16.60 -0.18 0.27 16 25 N -0.37 -3.61 2.93 -58.19 -0.17 -3.78 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 28 H 0.11 1.20 6.43 -51.93 -0.33 0.86 16 29 H 0.41 6.10 8.17 -40.82 -0.33 5.76 16 30 H 0.07 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 37 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.16 0.34 8.06 -52.49 -0.42 -0.08 16 39 H 0.17 0.41 8.05 -52.48 -0.42 -0.01 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -33.49 353.92 -9.89 -43.37 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.86 Total: 0.01 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -4.04 Total: -5.83 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.12 Total: -48.19 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.08 Total: -9.66 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.50 Total: -1.78 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.49 -9.89 -43.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155474977.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.667 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds