Wall clock time and date at job start Tue Mar 31 2020 13:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35273 * 117.00435 * 2 1 4 4 N 1.32274 * 120.82690 * 6.86539 * 3 2 1 5 5 C 1.33036 * 121.46264 * 180.27621 * 4 3 2 6 6 N 1.38543 * 118.63061 * 179.74982 * 5 4 3 7 7 C 1.38472 * 120.00191 * 184.17312 * 6 5 4 8 8 C 1.38933 * 119.99904 * 241.09313 * 7 6 5 9 9 H 1.08002 * 119.99656 * 188.82326 * 8 7 6 10 10 C 1.40867 * 120.00463 * 8.81541 * 8 7 6 11 11 N 1.30321 * 120.00109 * 144.26195 * 10 8 7 12 12 Si 1.86797 * 119.99717 * 324.26642 * 10 8 7 13 13 H 1.48502 * 109.47216 * 87.05997 * 12 10 8 14 14 H 1.48501 * 109.47068 * 207.05965 * 12 10 8 15 15 H 1.48504 * 109.47592 * 327.06079 * 12 10 8 16 16 C 1.41124 * 120.00059 * 61.08064 * 7 6 5 17 17 C 1.43201 * 120.00397 * 201.42794 * 16 7 6 18 18 N 8.67523 * 107.91260 * 353.40036 * 2 1 3 19 19 C 1.43197 * 119.99737 * 21.43641 * 16 7 6 20 20 N 6.07799 * 93.55138 * 327.91726 * 2 1 3 21 21 N 1.31898 * 122.73636 * 359.47261 * 5 4 3 22 22 C 1.34037 * 120.36347 * 0.25060 * 21 5 4 23 23 C 1.40196 * 121.92752 * 180.02562 * 22 21 5 24 24 C 1.36309 * 119.58925 * 179.97438 * 23 22 21 25 25 C 1.39222 * 121.03047 * 0.04782 * 24 23 22 26 26 C 1.36374 * 120.90904 * 359.94865 * 25 24 23 27 27 C 1.39983 * 119.51751 * 0.02618 * 26 25 24 28 28 H 1.09005 * 109.47061 * 303.58294 * 1 2 3 29 29 H 1.09004 * 109.47036 * 63.57871 * 1 2 3 30 30 H 1.08999 * 109.47558 * 183.58006 * 1 2 3 31 31 H 0.97001 * 119.99470 * 4.44453 * 6 5 4 32 32 H 0.96995 * 119.99785 * 180.02562 * 11 10 8 33 33 H 1.07997 * 120.20690 * 359.95797 * 23 22 21 34 34 H 1.08004 * 119.48362 * 179.97438 * 24 23 22 35 35 H 1.07999 * 119.54570 * 179.97438 * 25 24 23 36 36 H 1.08001 * 120.24285 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0432 1.2052 0.0000 4 7 1.3462 2.3212 0.1358 5 6 1.9366 3.5134 0.1321 6 7 1.1492 4.6445 0.2734 7 6 1.7221 5.9022 0.1870 8 6 1.6635 6.7682 1.2718 9 1 1.9809 7.7946 1.1611 10 6 1.1899 6.3078 2.5160 11 7 1.7175 6.7557 3.6203 12 14 -0.1941 5.0550 2.5830 13 1 0.3737 3.6853 2.5019 14 1 -0.9385 5.2076 3.8589 15 1 -1.1178 5.2762 1.4414 16 6 2.3658 6.3042 -1.0028 17 6 3.3312 7.3614 -0.9727 18 7 4.0972 8.2000 -0.9487 19 6 2.0533 5.6549 -2.2403 20 7 1.8054 5.1399 -3.2221 21 7 3.2408 3.6631 0.0049 22 6 4.0354 2.5925 -0.1334 23 6 5.4253 2.7135 -0.2704 24 6 6.1883 1.5923 -0.4076 25 6 5.6089 0.3264 -0.4149 26 6 4.2602 0.1725 -0.2837 27 6 3.4478 1.3034 -0.1405 28 1 -0.3633 0.5685 0.8562 29 1 -0.3633 0.4573 -0.9204 30 1 -0.3634 -1.0256 0.0642 31 1 0.1972 4.5554 0.4368 32 1 1.3916 6.4383 4.4770 33 1 5.8887 3.6890 -0.2676 34 1 7.2589 1.6876 -0.5135 35 1 6.2362 -0.5458 -0.5254 36 1 3.8222 -0.8146 -0.2904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158213534.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:21 Heat of formation + Delta-G solvation = 107.294767 kcal Electronic energy + Delta-G solvation = -26024.995886 eV Core-core repulsion = 22282.500998 eV Total energy + Delta-G solvation = -3742.494889 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.097 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24911 -38.84720 -38.34102 -36.56681 -35.05351 -34.53544 -34.04573 -33.07791 -31.48249 -30.43317 -29.01382 -27.57531 -27.28128 -24.24353 -23.51136 -22.02051 -21.43578 -19.42515 -19.14819 -18.16369 -17.44641 -17.20841 -16.74167 -16.27159 -15.73992 -15.61948 -15.16702 -14.58267 -14.45764 -14.13211 -13.68942 -13.37636 -13.26323 -12.76370 -12.47049 -12.35177 -12.20349 -12.10032 -12.02444 -11.80996 -11.57249 -11.54807 -11.43389 -11.35674 -10.87780 -10.75493 -10.68577 -10.53939 -10.09490 -10.00029 -9.62697 -8.93615 -8.82910 -8.28841 -7.93203 -7.24240 -5.39898 0.62242 1.05741 2.00883 2.16983 2.47648 2.57072 2.70733 2.77606 3.15583 3.25513 3.31117 3.87657 4.03216 4.23025 4.35668 4.43337 4.46475 4.78514 4.81497 4.98689 5.09102 5.14766 5.20028 5.30631 5.38438 5.48970 5.58167 5.65992 5.79438 6.06295 6.14719 6.30868 6.31431 6.54644 6.58049 6.83312 6.90110 7.03407 7.10428 7.20737 7.45205 7.55889 7.79636 8.09324 8.72586 8.90111 9.12640 9.33112 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.010390 B = 0.006194 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.208635 B = 4519.161280 C = 5568.537067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.297 6.297 3 C 0.432 3.568 4 N -0.620 5.620 5 C 0.610 3.390 6 N -0.651 5.651 7 C 0.344 3.656 8 C -0.329 4.329 9 H 0.129 0.871 10 C 0.076 3.924 11 N -0.696 5.696 12 Si 0.911 3.089 13 H -0.246 1.246 14 H -0.272 1.272 15 H -0.245 1.245 16 C -0.300 4.300 17 C 0.328 3.672 18 N -0.540 5.540 19 C 0.315 3.685 20 N -0.548 5.548 21 N -0.538 5.538 22 C 0.230 3.770 23 C -0.116 4.116 24 C -0.069 4.069 25 C -0.159 4.159 26 C -0.045 4.045 27 C -0.210 4.210 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.409 0.591 32 H 0.309 0.691 33 H 0.141 0.859 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.244 -14.781 4.121 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.199 6.199 3 C 0.232 3.768 4 N -0.358 5.358 5 C 0.254 3.746 6 N -0.289 5.289 7 C 0.244 3.756 8 C -0.355 4.355 9 H 0.146 0.854 10 C -0.160 4.160 11 N -0.312 5.312 12 Si 0.735 3.265 13 H -0.170 1.170 14 H -0.198 1.198 15 H -0.170 1.170 16 C -0.318 4.318 17 C 0.021 3.979 18 N -0.223 5.223 19 C 0.009 3.991 20 N -0.231 5.231 21 N -0.264 5.264 22 C 0.100 3.900 23 C -0.135 4.135 24 C -0.090 4.090 25 C -0.178 4.178 26 C -0.065 4.065 27 C -0.217 4.217 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.253 0.747 32 H 0.121 0.879 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.747 -13.473 3.025 13.919 hybrid contribution -1.004 -1.291 0.645 1.758 sum -2.751 -14.764 3.670 15.460 Atomic orbital electron populations 1.23001 0.76527 1.03275 1.03213 1.86140 1.23507 1.23957 1.86323 1.19822 0.88141 0.84153 0.84692 1.67125 1.41790 0.98235 1.28682 1.18635 0.85714 0.83655 0.86618 1.42159 1.09719 1.02170 1.74878 1.16620 0.88947 0.79566 0.90499 1.20280 1.24504 1.00442 0.90305 0.85362 1.26831 0.97281 0.97039 0.94872 1.69451 1.29890 1.31284 1.00576 0.86340 0.79529 0.81030 0.79592 1.16979 1.19832 1.16994 1.12294 1.20518 1.12139 0.86856 1.24622 0.90651 0.90628 0.91988 1.81036 1.16361 1.15849 1.09023 1.25172 0.91019 0.91064 0.91808 1.81024 1.15849 1.14572 1.11628 1.68640 1.02370 1.30906 1.24469 1.18642 0.94389 0.85992 0.90974 1.20679 0.90540 1.00015 1.02281 1.20961 1.00093 0.92096 0.95881 1.20754 0.94783 0.97489 1.04811 1.20728 0.93461 0.97118 0.95222 1.18517 0.91123 0.96701 1.15406 0.91530 0.91904 0.88222 0.74737 0.87871 0.84076 0.85365 0.85779 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.52 101.05 1.06 1.43 16 2 O -0.30 -4.06 9.84 -17.51 -0.17 -4.24 16 3 C 0.43 7.29 7.56 -16.12 -0.12 7.17 16 4 N -0.62 -11.59 9.29 -13.57 -0.13 -11.71 16 5 C 0.61 12.62 7.54 -322.67 -2.43 10.19 16 6 N -0.65 -13.22 2.79 -11.40 -0.03 -13.25 16 7 C 0.34 7.47 5.29 -83.51 -0.44 7.03 16 8 C -0.33 -7.06 8.95 -38.33 -0.34 -7.40 16 9 H 0.13 2.93 7.36 -52.49 -0.39 2.54 16 10 C 0.08 1.50 5.45 -17.20 -0.09 1.40 16 11 N -0.70 -14.00 13.90 55.60 0.77 -13.23 16 12 Si 0.91 15.04 24.79 -169.99 -4.21 10.83 16 13 H -0.25 -4.25 6.92 56.52 0.39 -3.86 16 14 H -0.27 -4.25 7.11 56.52 0.40 -3.84 16 15 H -0.25 -3.78 6.57 56.52 0.37 -3.41 16 16 C -0.30 -7.01 5.02 -104.95 -0.53 -7.54 16 17 C 0.33 8.06 14.11 -22.47 -0.32 7.74 16 18 N -0.54 -13.71 18.54 41.84 0.78 -12.93 16 19 C 0.32 7.67 14.38 -22.47 -0.32 7.35 16 20 N -0.55 -13.78 18.54 41.84 0.78 -13.00 16 21 N -0.54 -11.49 8.90 -11.95 -0.11 -11.60 16 22 C 0.23 4.32 6.61 -84.86 -0.56 3.76 16 23 C -0.12 -1.85 10.01 -39.54 -0.40 -2.24 16 24 C -0.07 -0.86 9.95 -39.91 -0.40 -1.26 16 25 C -0.16 -1.85 9.96 -39.89 -0.40 -2.25 16 26 C -0.04 -0.59 9.60 -39.60 -0.38 -0.97 16 27 C -0.21 -3.52 5.75 -106.69 -0.61 -4.14 16 28 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.41 7.54 4.97 -40.82 -0.20 7.33 16 32 H 0.31 5.37 8.28 -40.82 -0.34 5.03 16 33 H 0.14 2.24 8.06 -52.49 -0.42 1.82 16 34 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.42 7.71 -52.49 -0.40 1.01 16 LS Contribution 334.61 15.07 5.04 5.04 Total: -1.00 -28.68 334.61 -6.26 -34.94 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -2.69 Total: 8.88 kcal Atomic # 6 Polarization: 26.55 SS G_CDS: -6.28 Total: 20.26 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: 2.06 Total: -75.72 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.17 Total: -4.24 kcal Atomic # 14 Polarization: 15.04 SS G_CDS: -4.21 Total: 10.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.68 -6.26 -34.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158213534.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.237 kcal (2) G-P(sol) polarization free energy of solvation -28.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds