Wall clock time and date at job start Tue Mar 31 2020 12:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47017 * 2 1 4 4 H 1.09003 * 109.47155 * 305.00290 * 3 2 1 5 5 C 1.50696 * 109.47372 * 184.99922 * 3 2 1 6 6 H 1.08000 * 120.00289 * 240.00322 * 5 3 2 7 7 C 1.37885 * 119.99773 * 59.99757 * 5 3 2 8 8 N 1.31516 * 119.99841 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00034 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.46956 * 90.00088 * 9 7 5 11 11 H 1.48498 * 109.47227 * 210.00394 * 9 7 5 12 12 H 1.48502 * 109.46812 * 330.00272 * 9 7 5 13 13 N 1.46508 * 109.47150 * 64.99732 * 3 2 1 14 14 C 1.37894 * 120.00171 * 275.00470 * 13 3 2 15 15 N 1.32580 * 120.89046 * 0.02562 * 14 13 3 16 16 C 1.32493 * 121.47510 * 179.97438 * 15 14 13 17 17 Cl 1.73602 * 118.54966 * 180.02562 * 16 15 14 18 18 N 1.31309 * 122.89672 * 359.97438 * 16 15 14 19 19 C 1.34082 * 120.45934 * 0.03959 * 18 16 15 20 20 C 1.40642 * 121.94408 * 180.21401 * 19 18 16 21 21 O 1.35885 * 120.31380 * 0.02562 * 20 19 18 22 22 C 1.42898 * 117.00089 * 180.23109 * 21 20 19 23 23 C 1.37748 * 119.37471 * 180.24536 * 20 19 18 24 24 C 1.39160 * 120.81455 * 359.49495 * 23 20 19 25 25 C 1.36359 * 120.96594 * 0.25724 * 24 23 20 26 26 C 1.39974 * 119.75820 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.46929 * 299.99651 * 1 2 3 28 28 H 1.08996 * 109.47454 * 59.99717 * 1 2 3 29 29 H 1.08998 * 109.46957 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46946 * 240.00339 * 2 1 3 31 31 H 1.09000 * 109.47218 * 119.99827 * 2 1 3 32 32 H 0.97002 * 119.99714 * 180.02562 * 8 7 5 33 33 H 0.96996 * 119.99315 * 94.99838 * 13 3 2 34 34 H 1.09001 * 109.47373 * 59.99457 * 22 21 20 35 35 H 1.08997 * 109.47636 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.46973 * 300.00091 * 22 21 20 37 37 H 1.08002 * 119.59573 * 179.77972 * 23 20 19 38 38 H 1.08001 * 119.51744 * 180.27857 * 24 23 20 39 39 H 1.08005 * 120.11619 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0050 0.8802 -1.3812 10 1 6.5538 -0.3518 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0976 1.2518 14 6 0.4069 2.6775 1.3697 15 7 -0.4539 2.6522 0.3616 16 6 -1.6536 3.2053 0.4623 17 17 -2.7206 3.1272 -0.9049 18 7 -2.0716 3.8089 1.5509 19 6 -1.2791 3.8912 2.6293 20 6 -1.6964 4.5265 3.8127 21 8 -2.9342 5.0813 3.8935 22 6 -3.2829 5.7129 5.1270 23 6 -0.8369 4.5849 4.8875 24 6 0.4308 4.0151 4.8183 25 6 0.8577 3.3890 3.6846 26 6 0.0123 3.3151 2.5715 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8293 -0.0610 -2.9499 33 1 2.2719 2.1232 1.9978 34 1 -2.5842 6.5246 5.3298 35 1 -4.2942 6.1134 5.0571 36 1 -3.2359 4.9827 5.9350 37 1 -1.1524 5.0750 5.7968 38 1 1.0860 4.0692 5.6751 39 1 1.8442 2.9511 3.6461 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:19 Heat of formation + Delta-G solvation = 13.299229 kcal Electronic energy + Delta-G solvation = -24744.314478 eV Core-core repulsion = 21098.851131 eV Total energy + Delta-G solvation = -3645.463347 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.44068 -40.31216 -38.49764 -38.04675 -37.30922 -35.36951 -33.60536 -33.02384 -31.32343 -30.74328 -28.76166 -28.16603 -25.45022 -25.32273 -24.51129 -22.65572 -21.80333 -20.35580 -19.46952 -18.76803 -18.30109 -17.21647 -16.97191 -16.96201 -16.57059 -16.34928 -16.26316 -15.59558 -15.53823 -14.81940 -14.71809 -14.50545 -13.72088 -13.63913 -13.58403 -13.17034 -13.05992 -12.96436 -12.81867 -12.59194 -12.45139 -12.31951 -12.16163 -12.09166 -11.97977 -11.85906 -11.71344 -11.50304 -11.02177 -10.52655 -10.30786 -10.11826 -9.55790 -8.43481 -8.15408 -6.32561 -0.51658 -0.34773 0.48735 0.93146 1.45827 1.47002 1.56353 1.98530 2.03476 2.35883 2.49270 3.01433 3.14837 3.23117 3.49974 3.66144 3.90091 4.03268 4.18562 4.39585 4.46301 4.46680 4.53885 4.57144 4.59632 4.79118 4.79657 5.06261 5.11768 5.12657 5.27802 5.35812 5.44297 5.57550 5.60851 5.66361 5.72229 5.85636 6.10090 6.25588 6.42405 6.65809 6.82464 7.22718 7.39083 8.89250 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.004134 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.727224 B = 6770.747303 C = 8122.657569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C 0.283 3.717 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.071 0.929 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.266 1.266 13 N -0.655 5.655 14 C 0.477 3.523 15 N -0.598 5.598 16 C 0.395 3.605 17 Cl 0.012 6.988 18 N -0.552 5.552 19 C 0.146 3.854 20 C 0.121 3.879 21 O -0.322 6.322 22 C 0.014 3.986 23 C -0.163 4.163 24 C -0.082 4.082 25 C -0.109 4.109 26 C -0.180 4.180 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.265 0.735 33 H 0.416 0.584 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.175 0.825 38 H 0.175 0.825 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 8.025 17.043 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.157 4.157 3 C 0.180 3.820 4 H 0.037 0.963 5 C -0.590 4.590 6 H 0.089 0.911 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.190 1.190 13 N -0.283 5.283 14 C 0.220 3.780 15 N -0.331 5.331 16 C 0.098 3.902 17 Cl 0.039 6.961 18 N -0.277 5.277 19 C 0.022 3.978 20 C 0.073 3.927 21 O -0.235 6.235 22 C -0.080 4.080 23 C -0.185 4.185 24 C -0.100 4.100 25 C -0.130 4.130 26 C -0.189 4.189 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.255 0.745 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.091 0.909 37 H 0.193 0.807 38 H 0.192 0.808 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.242 7.849 15.712 19.402 hybrid contribution 1.336 -0.182 -0.016 1.348 sum -6.907 7.667 15.696 18.785 Atomic orbital electron populations 1.21653 0.96932 0.98690 1.00296 1.21779 0.93716 0.98930 1.01269 1.18597 0.93664 0.89265 0.80474 0.96294 1.21522 0.91261 1.39347 1.06855 0.91071 1.25661 1.02899 0.94354 0.95012 1.70031 1.36896 1.37982 1.09758 0.85430 0.79549 0.78779 0.77087 1.19792 1.21442 1.19021 1.45215 1.10524 1.54079 1.18436 1.18691 0.86561 0.85486 0.87262 1.67432 1.04262 1.28736 1.32654 1.22453 0.87500 0.91384 0.88899 1.98371 1.61702 1.96569 1.39416 1.68145 1.36499 1.23266 0.99805 1.18154 0.89822 0.97899 0.91951 1.18625 0.86502 0.95452 0.92091 1.86184 1.28483 1.69368 1.39423 1.23462 1.03119 0.97527 0.83909 1.21649 0.94637 1.03808 0.98360 1.21038 0.95537 0.95230 0.98243 1.20915 0.99522 1.00679 0.91841 1.18910 0.97192 1.06192 0.96575 0.95012 0.94007 0.94311 0.90618 0.94514 0.92569 0.74464 0.90907 0.86748 0.90853 0.80743 0.80781 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.45 71.98 0.61 -4.54 16 2 C -0.12 -5.55 5.45 30.60 0.17 -5.38 16 3 C 0.28 13.61 2.25 44.24 0.10 13.71 16 4 H 0.02 1.08 7.57 -2.39 -0.02 1.07 16 5 C -0.55 -27.72 8.73 25.60 0.22 -27.50 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.32 16 7 C 0.02 1.12 5.29 84.66 0.45 1.57 16 8 N -0.91 -50.02 11.29 21.45 0.24 -49.77 16 9 Si 0.97 40.73 29.54 68.60 2.03 42.75 16 10 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 13 N -0.66 -25.81 5.07 -326.66 -1.66 -27.47 16 14 C 0.48 18.80 6.09 134.01 0.82 19.62 16 15 N -0.60 -25.84 6.55 -187.44 -1.23 -27.07 16 16 C 0.39 16.17 8.15 180.82 1.47 17.64 16 17 Cl 0.01 0.42 29.24 -2.72 -0.08 0.34 16 18 N -0.55 -21.88 10.22 -184.36 -1.88 -23.76 16 19 C 0.15 5.14 6.63 40.20 0.27 5.41 16 20 C 0.12 3.31 6.73 22.74 0.15 3.46 16 21 O -0.32 -8.38 10.33 -92.26 -0.95 -9.34 16 22 C 0.01 0.18 9.81 113.37 1.11 1.29 16 23 C -0.16 -2.99 9.03 22.38 0.20 -2.79 16 24 C -0.08 -1.42 9.95 22.05 0.22 -1.20 16 25 C -0.11 -2.62 9.52 22.25 0.21 -2.41 16 26 C -0.18 -6.02 5.75 -21.21 -0.12 -6.14 16 27 H 0.03 1.35 5.59 -2.38 -0.01 1.34 16 28 H 0.04 1.94 7.70 -2.39 -0.02 1.92 16 29 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 4.01 5.95 -2.39 -0.01 4.00 16 31 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.42 13.82 6.78 -92.71 -0.63 13.19 16 34 H 0.07 0.68 7.67 -2.39 -0.02 0.66 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.07 0.68 7.67 -2.38 -0.02 0.66 16 37 H 0.18 1.72 6.26 -2.91 -0.02 1.70 16 38 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.15 2.95 6.57 -2.91 -0.02 2.93 16 Total: -1.00 -66.76 335.69 2.83 -63.94 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.48 Total: 17.64 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.88 Total: 12.75 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -4.53 Total: -128.08 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.95 Total: -9.34 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -0.08 Total: 0.34 kcal Total: -66.76 2.83 -63.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.234 kcal (2) G-P(sol) polarization free energy of solvation -66.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds