Wall clock time and date at job start Tue Mar 31 2020 13:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35950 * 117.00388 * 2 1 4 4 C 1.38605 * 120.00711 * 0.02562 * 3 2 1 5 5 C 1.38841 * 119.93596 * 179.97438 * 4 3 2 6 6 N 1.39795 * 120.01413 * 179.97438 * 5 4 3 7 7 C 1.39783 * 119.99591 * 140.00314 * 6 5 4 8 8 C 1.38775 * 120.10792 * 352.44683 * 7 6 5 9 9 C 1.38186 * 119.99186 * 180.02562 * 8 7 6 10 10 C 1.38351 * 120.20561 * 359.97438 * 9 8 7 11 11 C 1.38176 * 120.21482 * 0.02829 * 10 9 8 12 12 C 1.38719 * 120.00500 * 359.67741 * 11 10 9 13 13 O 1.35792 * 120.10357 * 180.32204 * 12 11 10 14 14 C 1.34799 * 117.00107 * 6.38237 * 13 12 11 15 15 H 1.08000 * 119.99631 * 354.71249 * 14 13 12 16 16 C 1.38622 * 120.00102 * 174.71003 * 14 13 12 17 17 N 1.31581 * 119.99857 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47524 * 90.00046 * 18 16 14 20 20 H 1.48507 * 109.46820 * 209.99664 * 18 16 14 21 21 H 1.48496 * 109.47366 * 329.99559 * 18 16 14 22 22 C 1.38916 * 119.96118 * 359.97438 * 5 4 3 23 23 C 1.38354 * 120.02497 * 0.02562 * 22 5 4 24 24 F 1.35101 * 119.97212 * 179.97438 * 23 22 5 25 25 C 1.38570 * 120.06116 * 359.73989 * 23 22 5 26 26 F 1.35104 * 119.98228 * 180.25485 * 25 23 22 27 27 H 1.09002 * 109.46585 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46967 * 299.99928 * 1 2 3 29 29 H 1.08996 * 109.46836 * 60.00212 * 1 2 3 30 30 H 1.08003 * 120.03005 * 359.97438 * 4 3 2 31 31 H 0.96993 * 120.00267 * 319.99444 * 6 5 4 32 32 H 1.08005 * 120.00516 * 359.97438 * 8 7 6 33 33 H 1.07999 * 119.89444 * 179.97438 * 9 8 7 34 34 H 1.08002 * 119.89471 * 180.02562 * 10 9 8 35 35 H 1.08000 * 119.99917 * 179.97438 * 11 10 9 36 36 H 0.97002 * 119.99535 * 180.02562 * 17 16 14 37 37 H 1.08002 * 119.98905 * 180.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2916 2.3739 0.0005 5 6 1.9236 3.6101 0.0011 6 7 1.1640 4.7837 0.0011 7 6 1.5626 5.8741 0.7796 8 6 2.6184 5.7443 1.6708 9 6 3.0101 6.8236 2.4396 10 6 2.3531 8.0356 2.3239 11 6 1.3007 8.1744 1.4393 12 6 0.9041 7.0984 0.6588 13 8 -0.1257 7.2344 -0.2159 14 6 -0.6343 8.4726 -0.3747 15 1 -0.2805 9.2850 0.2428 16 6 -1.6113 8.7033 -1.3306 17 7 -2.0427 7.7134 -2.0826 18 14 -2.3155 10.4193 -1.5511 19 1 -1.5099 11.1599 -2.5549 20 1 -3.7213 10.3210 -2.0198 21 1 -2.2755 11.1413 -0.2541 22 6 3.3110 3.6801 0.0016 23 6 4.0627 2.5186 0.0011 24 9 5.4119 2.5878 0.0011 25 6 3.4330 1.2842 0.0054 26 9 4.1686 0.1510 0.0101 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2130 2.3181 0.0005 31 1 0.3606 4.8414 -0.5392 32 1 3.1334 4.7995 1.7641 33 1 3.8318 6.7207 3.1330 34 1 2.6637 8.8760 2.9270 35 1 0.7899 9.1220 1.3521 36 1 -2.7261 7.8750 -2.7517 37 1 3.8030 4.6415 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:06 Heat of formation + Delta-G solvation = -102.421887 kcal Electronic energy + Delta-G solvation = -26170.180438 eV Core-core repulsion = 21935.609615 eV Total energy + Delta-G solvation = -4234.570823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.096 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.51113 -49.55023 -41.60786 -40.76041 -39.21838 -37.89665 -35.90702 -34.23071 -31.68165 -31.17233 -30.63394 -29.10204 -28.13185 -27.30059 -24.20657 -24.00052 -22.91895 -22.49536 -19.92901 -19.61943 -19.37345 -18.67905 -18.42573 -17.65086 -17.56787 -17.16016 -16.92499 -16.56089 -16.36341 -15.98686 -15.89701 -15.73313 -15.56955 -15.38904 -15.31354 -14.85385 -14.30761 -14.08889 -14.01187 -13.54143 -13.41804 -13.15740 -12.86883 -12.67051 -12.49862 -12.45007 -12.35077 -12.20783 -12.07943 -11.41459 -11.23555 -10.76893 -9.90550 -9.56229 -9.21677 -8.43950 -8.17865 -6.06678 -0.28061 -0.08886 0.63723 0.80698 1.38006 1.45317 1.52983 1.82415 2.15103 2.18382 2.25147 2.86872 2.91816 3.18874 3.25447 3.42925 3.55781 3.88307 3.95177 4.06674 4.13276 4.31987 4.36476 4.37467 4.56573 4.59179 4.67355 4.73488 4.75641 4.88936 4.99249 5.10349 5.14414 5.35762 5.44476 5.62581 5.81846 5.97594 6.05414 6.09439 6.40148 6.55537 7.02767 7.79826 8.78323 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.014949 B = 0.003564 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.577313 B = 7854.106109 C = 9117.880284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.316 6.316 3 C 0.163 3.837 4 C -0.231 4.231 5 C 0.247 3.753 6 N -0.672 5.672 7 C 0.111 3.889 8 C -0.146 4.146 9 C -0.150 4.150 10 C -0.108 4.108 11 C -0.213 4.213 12 C 0.073 3.927 13 O -0.225 6.225 14 C -0.405 4.405 15 H 0.099 0.901 16 C -0.018 4.018 17 N -0.916 5.916 18 Si 1.010 2.990 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.255 1.255 22 C -0.210 4.210 23 C 0.140 3.860 24 F -0.124 7.124 25 C -0.021 4.021 26 F -0.135 7.135 27 H 0.130 0.870 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.163 0.837 31 H 0.416 0.584 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.270 0.730 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.436 -9.570 6.008 13.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.229 6.229 3 C 0.114 3.886 4 C -0.253 4.253 5 C 0.146 3.854 6 N -0.295 5.295 7 C 0.014 3.986 8 C -0.167 4.167 9 C -0.169 4.169 10 C -0.127 4.127 11 C -0.233 4.233 12 C 0.022 3.978 13 O -0.132 6.132 14 C -0.481 4.481 15 H 0.116 0.884 16 C -0.215 4.215 17 N -0.555 5.555 18 Si 0.831 3.169 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.179 1.179 22 C -0.232 4.232 23 C 0.119 3.881 24 F -0.102 7.102 25 C -0.043 4.043 26 F -0.114 7.114 27 H 0.148 0.852 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.180 0.820 31 H 0.253 0.747 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.079 0.921 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.380 -9.986 5.771 13.180 hybrid contribution -0.685 0.807 -0.634 1.234 sum 5.695 -9.179 5.137 11.961 Atomic orbital electron populations 1.23537 0.75160 1.06404 1.02913 1.86125 1.24369 1.24630 1.87773 1.18253 0.89362 0.85831 0.95106 1.21042 1.01826 0.89200 1.13231 1.17157 0.89573 0.85905 0.92812 1.41954 1.28929 1.10167 1.48413 1.17219 0.98592 0.85452 0.97343 1.20988 0.97478 1.00944 0.97295 1.20990 1.02156 0.92216 1.01560 1.21073 0.94936 0.98670 0.98007 1.21165 1.02244 0.98832 1.01038 1.19381 0.91041 0.93663 0.93760 1.83821 1.42222 1.31961 1.55188 1.21691 1.21029 0.84879 1.20530 0.88416 1.26346 0.96776 1.03776 0.94644 1.70142 1.29727 1.33595 1.22003 0.84688 0.77508 0.75303 0.79437 1.19320 1.19903 1.17867 1.20871 0.92906 0.98153 1.11307 1.16849 0.77254 0.91727 1.02294 1.91527 1.28020 1.96997 1.93671 1.16697 0.87107 0.81644 1.18841 1.91459 1.76500 1.48308 1.95114 0.85242 0.91156 0.91300 0.81960 0.74650 0.83824 0.83219 0.83976 0.86030 0.92084 0.82827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.37 10.36 -92.98 -0.96 -8.33 16 3 C 0.16 4.21 6.69 22.51 0.15 4.36 16 4 C -0.23 -5.88 8.96 22.50 0.20 -5.68 16 5 C 0.25 7.29 5.93 38.18 0.23 7.51 16 6 N -0.67 -23.82 5.47 -180.12 -0.99 -24.81 16 7 C 0.11 4.28 6.45 38.32 0.25 4.53 16 8 C -0.15 -4.67 7.98 22.39 0.18 -4.49 16 9 C -0.15 -4.36 10.04 22.28 0.22 -4.14 16 10 C -0.11 -3.43 10.04 22.28 0.22 -3.21 16 11 C -0.21 -8.60 9.16 22.37 0.20 -8.40 16 12 C 0.07 3.32 6.66 22.70 0.15 3.47 16 13 O -0.22 -12.17 9.02 -22.90 -0.21 -12.38 16 14 C -0.40 -22.01 9.49 67.91 0.64 -21.36 16 15 H 0.10 4.92 5.21 -2.91 -0.02 4.91 16 16 C -0.02 -0.95 5.49 84.82 0.47 -0.48 16 17 N -0.92 -52.59 13.67 21.61 0.30 -52.29 16 18 Si 1.01 41.01 29.55 68.60 2.03 43.04 16 19 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 22 C -0.21 -5.94 7.33 22.46 0.16 -5.77 16 23 C 0.14 3.88 7.30 22.38 0.16 4.04 16 24 F -0.12 -3.45 17.18 44.97 0.77 -2.68 16 25 C -0.02 -0.59 7.31 22.50 0.16 -0.43 16 26 F -0.13 -4.02 17.02 44.97 0.77 -3.26 16 27 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 29 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 30 H 0.16 3.55 6.29 -2.91 -0.02 3.54 16 31 H 0.42 16.02 8.22 -92.71 -0.76 15.26 16 32 H 0.14 4.03 5.25 -2.91 -0.02 4.02 16 33 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 34 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 35 H 0.12 5.02 5.65 -2.91 -0.02 5.00 16 36 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 37 H 0.15 4.37 6.47 -2.91 -0.02 4.35 16 Total: -1.00 -64.41 327.20 6.63 -57.78 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.40 Total: 31.65 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 4.52 Total: -28.73 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -0.69 Total: -77.10 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -1.17 Total: -20.71 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 1.54 Total: -5.93 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -64.41 6.63 -57.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.643 kcal (2) G-P(sol) polarization free energy of solvation -64.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds