Wall clock time and date at job start Tue Mar 31 2020 12:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.46876 * 2 1 4 4 C 1.36010 * 117.00256 * 180.02562 * 3 2 1 5 5 C 1.38725 * 119.97082 * 0.02562 * 4 3 2 6 6 C 1.38269 * 120.25627 * 179.97438 * 5 4 3 7 7 C 1.38225 * 120.20273 * 0.02562 * 6 5 4 8 8 F 1.35105 * 120.03021 * 180.02562 * 7 6 5 9 9 C 1.39618 * 119.94679 * 359.97438 * 7 6 5 10 10 C 1.48208 * 120.13071 * 179.97438 * 9 7 6 11 11 C 1.39468 * 119.65429 * 131.92488 * 10 9 7 12 12 C 1.38198 * 119.14379 * 179.75108 * 11 10 9 13 13 C 1.39437 * 118.46502 * 0.25372 * 12 11 10 14 14 O 1.35722 * 120.38417 * 179.97438 * 13 12 11 15 15 C 1.34801 * 117.00062 * 354.23128 * 14 13 12 16 16 H 1.08000 * 120.00055 * 354.64992 * 15 14 13 17 17 C 1.38650 * 120.00081 * 174.64685 * 15 14 13 18 18 N 1.31562 * 119.99687 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00019 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47317 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47011 * 120.00174 * 19 17 15 22 22 H 1.48498 * 109.47223 * 239.99967 * 19 17 15 23 23 C 1.38935 * 119.23388 * 0.02562 * 13 12 11 24 24 N 1.31690 * 120.78786 * 359.97438 * 23 13 12 25 25 C 1.38675 * 119.97671 * 180.23623 * 4 3 2 26 26 F 1.35101 * 120.09841 * 0.04349 * 25 4 3 27 27 H 1.08994 * 109.47430 * 60.00095 * 1 2 3 28 28 H 1.09003 * 109.46795 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47187 * 299.99528 * 1 2 3 30 30 H 1.09002 * 109.47187 * 240.00472 * 2 1 3 31 31 H 1.08994 * 109.47430 * 119.99904 * 2 1 3 32 32 H 1.07999 * 119.86958 * 359.95703 * 5 4 3 33 33 H 1.08000 * 119.89714 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.43054 * 0.02562 * 11 10 9 35 35 H 1.08008 * 120.76597 * 180.23242 * 12 11 10 36 36 H 0.97002 * 119.99859 * 180.02562 * 18 17 15 37 37 H 1.07996 * 119.60452 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5256 -0.0005 5 6 4.1992 0.4251 -0.0016 6 6 5.5708 0.5996 -0.0027 7 6 6.1099 1.8724 -0.0022 8 9 7.4507 2.0388 -0.0038 9 6 5.2678 2.9860 -0.0011 10 6 5.8414 4.3525 0.0000 11 6 5.3617 5.3030 -0.9009 12 6 5.9005 6.5755 -0.8872 13 6 6.9126 6.8589 0.0291 14 8 7.4698 8.0956 0.0759 15 6 7.0860 8.9759 -0.8700 16 1 6.4328 8.6589 -1.6696 17 6 7.5296 10.2884 -0.8165 18 7 8.3256 10.6745 0.1573 19 14 6.9983 11.5082 -2.1277 20 1 6.1099 10.8291 -3.1047 21 1 6.2655 12.6319 -1.4907 22 1 8.1967 12.0337 -2.8297 23 6 7.3449 5.8602 0.8929 24 7 6.8103 4.6574 0.8540 25 6 3.8840 2.8073 0.0044 26 9 3.0624 3.8798 0.0106 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7837 -0.5717 -0.0013 33 1 6.2230 -0.2613 -0.0039 34 1 4.5761 5.0492 -1.5973 35 1 5.5461 7.3330 -1.5708 36 1 8.6357 11.5928 0.1951 37 1 8.1287 6.0730 1.6047 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241056595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:31 Heat of formation + Delta-G solvation = -94.092017 kcal Electronic energy + Delta-G solvation = -25802.878613 eV Core-core repulsion = 21568.669001 eV Total energy + Delta-G solvation = -4234.209612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.096 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.73169 -48.60846 -40.15639 -39.58995 -37.74737 -36.88807 -32.68383 -32.19367 -31.88300 -31.29264 -29.27230 -28.35850 -25.77424 -24.44212 -23.17553 -22.74659 -22.24866 -21.09025 -18.69222 -18.13007 -17.74549 -17.41585 -17.09083 -16.59666 -15.92439 -15.68947 -15.50112 -15.13688 -15.00191 -14.69721 -14.57831 -14.28962 -14.04541 -13.62754 -13.31440 -13.29662 -13.11865 -12.84793 -12.55333 -12.43433 -12.23574 -11.96475 -11.84738 -11.72746 -11.57711 -11.17768 -11.03551 -10.87514 -10.57953 -9.88885 -9.31343 -9.11491 -8.92704 -8.73039 -8.18813 -7.41757 -6.67018 -4.23261 0.73873 1.01190 1.95864 2.11887 2.79190 3.02656 3.03943 3.10050 3.31181 3.79990 3.93720 4.32635 4.38913 4.46648 4.56933 4.62214 4.70502 4.81695 4.88597 4.92743 5.03166 5.10209 5.29011 5.44065 5.45736 5.64810 5.68396 5.73859 5.82881 5.88333 5.91975 5.97921 6.12114 6.43591 6.54661 6.77331 6.93905 7.09282 7.12062 7.36910 7.75639 8.65251 8.77269 9.40650 10.49084 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.020643 B = 0.002930 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.096414 B = 9552.493979 C =10563.199981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.307 6.307 4 C 0.086 3.914 5 C -0.164 4.164 6 C -0.127 4.127 7 C 0.112 3.888 8 F -0.120 7.120 9 C -0.031 4.031 10 C 0.024 3.976 11 C -0.082 4.082 12 C -0.203 4.203 13 C 0.114 3.886 14 O -0.155 6.155 15 C -0.393 4.393 16 H 0.096 0.904 17 C 0.043 3.957 18 N -0.849 5.849 19 Si 0.946 3.054 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.273 1.273 23 C 0.034 3.966 24 N -0.417 5.417 25 C 0.102 3.898 26 F -0.118 7.118 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.274 0.726 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.120 -20.053 -2.181 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.221 6.221 4 C 0.040 3.960 5 C -0.183 4.183 6 C -0.146 4.146 7 C 0.092 3.908 8 F -0.098 7.098 9 C -0.034 4.034 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.229 4.229 13 C 0.056 3.944 14 O -0.055 6.055 15 C -0.469 4.469 16 H 0.113 0.887 17 C -0.164 4.164 18 N -0.481 5.481 19 Si 0.770 3.230 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.198 1.198 23 C -0.131 4.131 24 N -0.127 5.127 25 C 0.081 3.919 26 F -0.097 7.097 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.158 0.842 36 H 0.084 0.916 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.676 -20.133 -1.400 22.831 hybrid contribution -0.447 1.282 -1.243 1.840 sum -11.123 -18.851 -2.643 22.047 Atomic orbital electron populations 1.21776 0.92557 1.02844 1.03799 1.22846 0.96096 0.81735 1.01523 1.86160 1.17573 1.29480 1.88903 1.18711 0.83621 0.92316 1.01324 1.20858 0.92831 0.97868 1.06781 1.20867 0.95249 0.95913 1.02532 1.17253 0.77884 0.92202 1.03480 1.91551 1.28481 1.96243 1.93504 1.18289 0.89995 0.92963 1.02119 1.18464 1.00531 0.91888 1.00144 1.21619 0.98313 0.92812 0.97438 1.21439 1.00425 0.97387 1.03635 1.20569 0.91714 0.87989 0.94176 1.83975 1.56570 1.16520 1.48434 1.21484 1.31815 0.89801 1.03777 0.88652 1.25398 0.95917 0.96821 0.98258 1.70045 1.29400 1.18535 1.30146 0.85571 0.78782 0.79507 0.79190 1.18857 1.19854 1.19847 1.21738 1.02870 0.86936 1.01518 1.67386 1.06807 1.19124 1.19335 1.16550 0.86338 0.81297 1.07679 1.91530 1.70984 1.53329 1.93828 0.91386 0.90290 0.91377 0.91797 0.91789 0.83847 0.83834 0.86154 0.84193 0.91551 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.31 -3.67 10.00 -19.77 -0.20 -3.87 16 4 C 0.09 1.12 6.69 -39.24 -0.26 0.85 16 5 C -0.16 -1.67 9.03 -39.39 -0.36 -2.03 16 6 C -0.13 -1.42 10.01 -39.57 -0.40 -1.82 16 7 C 0.11 1.72 7.23 -39.07 -0.28 1.44 16 8 F -0.12 -2.05 16.38 2.25 0.04 -2.01 16 9 C -0.03 -0.53 5.61 -104.81 -0.59 -1.12 16 10 C 0.02 0.48 5.97 -82.94 -0.49 -0.01 16 11 C -0.08 -1.62 8.85 -39.14 -0.35 -1.97 16 12 C -0.20 -4.42 9.22 -39.15 -0.36 -4.78 16 13 C 0.11 2.72 6.67 -38.88 -0.26 2.47 16 14 O -0.16 -4.26 9.76 0.22 0.00 -4.25 16 15 C -0.39 -10.50 9.46 30.88 0.29 -10.20 16 16 H 0.10 2.35 5.34 -52.49 -0.28 2.07 16 17 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 18 N -0.85 -23.80 13.67 55.48 0.76 -23.04 16 19 Si 0.95 19.61 29.55 -169.99 -5.02 14.59 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 C 0.03 0.76 11.14 -17.35 -0.19 0.56 16 24 N -0.42 -9.01 9.70 -9.62 -0.09 -9.11 16 25 C 0.10 1.63 7.14 -38.94 -0.28 1.35 16 26 F -0.12 -2.05 15.57 2.25 0.04 -2.02 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 32 H 0.14 0.95 6.28 -52.49 -0.33 0.62 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.12 2.08 7.63 -52.49 -0.40 1.68 16 35 H 0.14 2.93 5.83 -52.48 -0.31 2.62 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.16 3.19 8.06 -52.49 -0.42 2.76 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -31.14 333.43 -5.85 -36.99 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.36 Total: 1.87 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -3.04 Total: -14.16 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.67 Total: -32.15 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.20 Total: -8.12 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.07 Total: -4.03 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.14 -5.85 -36.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241056595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.103 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds