Wall clock time and date at job start Tue Mar 31 2020 13:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35607 * 117.00112 * 2 1 4 4 C 1.38515 * 120.08050 * 359.97438 * 3 2 1 5 5 C 1.38027 * 120.31147 * 180.27890 * 4 3 2 6 6 C 1.39960 * 120.46652 * 359.49292 * 5 4 3 7 7 C 1.48316 * 119.92140 * 180.25784 * 6 5 4 8 8 C 1.39566 * 120.56178 * 130.25092 * 7 6 5 9 9 C 1.38550 * 118.37438 * 179.97438 * 8 7 6 10 10 C 1.38188 * 119.41020 * 359.97438 * 9 8 7 11 11 N 1.31963 * 121.10070 * 0.02562 * 10 9 8 12 12 C 1.32148 * 121.77796 * 359.72056 * 11 10 9 13 13 O 1.35622 * 119.77160 * 180.27055 * 12 11 10 14 14 C 1.42903 * 117.00085 * 0.26713 * 13 12 11 15 15 F 1.39892 * 109.46836 * 300.00469 * 14 13 12 16 16 F 1.39906 * 109.46627 * 59.99951 * 14 13 12 17 17 C 1.38638 * 120.15619 * 0.50674 * 6 5 4 18 18 C 1.40521 * 119.68446 * 359.74885 * 17 6 5 19 19 C 1.41174 * 120.22699 * 179.97438 * 18 17 6 20 20 H 1.08006 * 119.99932 * 154.46629 * 19 18 17 21 21 C 1.39904 * 120.00165 * 334.46111 * 19 18 17 22 22 N 1.30878 * 119.99789 * 343.18828 * 21 19 18 23 23 Si 1.86795 * 120.00039 * 163.18726 * 21 19 18 24 24 H 1.48502 * 109.47412 * 60.00173 * 23 21 19 25 25 H 1.48501 * 109.47091 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47099 * 300.00309 * 23 21 19 27 27 H 1.09003 * 109.47020 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 300.00301 * 1 2 3 29 29 H 1.08998 * 109.47363 * 60.00255 * 1 2 3 30 30 H 1.08006 * 119.84259 * 359.97438 * 4 3 2 31 31 H 1.08008 * 119.76545 * 179.72210 * 5 4 3 32 32 H 1.08002 * 120.81383 * 359.97438 * 8 7 6 33 33 H 1.08005 * 120.29469 * 180.02562 * 9 8 7 34 34 H 1.08001 * 119.45122 * 179.97438 * 10 9 8 35 35 H 1.08991 * 109.47265 * 179.97438 * 14 13 12 36 36 H 1.07997 * 120.15642 * 179.73105 * 17 6 5 37 37 H 0.97005 * 120.00000 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2919 2.3710 -0.0005 5 6 1.9136 3.6033 -0.0063 6 6 3.3103 3.6936 -0.0011 7 6 3.9656 5.0241 -0.0016 8 6 4.9722 5.3198 0.9189 9 6 5.5539 6.5766 0.8775 10 6 5.1253 7.4919 -0.0649 11 7 4.1715 7.1889 -0.9250 12 6 3.5893 6.0026 -0.9292 13 8 2.6169 5.7329 -1.8353 14 6 2.2798 6.7738 -2.7545 15 9 1.8335 7.8947 -2.0463 16 9 3.4092 7.1162 -3.5058 17 6 4.0826 2.5423 -0.0005 18 6 3.4565 1.2843 0.0000 19 6 4.2318 0.1045 0.0000 20 1 3.8232 -0.8102 0.4036 21 6 5.5293 0.1201 -0.5229 22 7 5.9110 1.1038 -1.2973 23 14 6.7171 -1.2628 -0.1157 24 1 6.1552 -2.5534 -0.5890 25 1 8.0175 -1.0124 -0.7877 26 1 6.9231 -1.3219 1.3538 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.2134 2.3131 -0.0014 31 1 1.3180 4.5044 -0.0113 32 1 5.2899 4.5868 1.6457 33 1 6.3358 6.8383 1.5750 34 1 5.5780 8.4720 -0.0975 35 1 1.4910 6.4276 -3.4221 36 1 5.1603 2.6119 -0.0009 37 1 6.8108 1.1149 -1.6595 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242630120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:34 Heat of formation + Delta-G solvation = -145.453602 kcal Electronic energy + Delta-G solvation = -26811.647555 eV Core-core repulsion = 22575.210738 eV Total energy + Delta-G solvation = -4236.436818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.00044 -48.13176 -41.60839 -40.32043 -38.79663 -37.90660 -35.64563 -33.78608 -32.23755 -31.57264 -29.59222 -28.01658 -27.24511 -26.94539 -24.59190 -23.94962 -22.73310 -21.71875 -20.18460 -19.43315 -18.98225 -18.80121 -18.25229 -17.41682 -17.30249 -16.57258 -16.49489 -16.31525 -16.18157 -15.86246 -15.58877 -14.90470 -14.88074 -14.51872 -14.48082 -14.28608 -14.15354 -13.98769 -13.62924 -13.50352 -13.41556 -13.14445 -13.05442 -12.81058 -12.57439 -12.50078 -12.11745 -11.86214 -11.66229 -11.32103 -11.04299 -10.75368 -10.64092 -9.69972 -9.38942 -8.68633 -8.45712 -6.20700 -0.01465 0.24551 0.97008 1.10014 1.39778 1.50035 1.53107 1.63511 2.24717 2.62932 2.67381 2.82310 2.92368 3.24621 3.62289 3.68718 3.82156 3.92063 4.01278 4.08410 4.31366 4.38204 4.44095 4.51027 4.59011 4.65468 4.76578 4.98207 5.03359 5.18436 5.25014 5.37829 5.44616 5.47883 5.80079 5.83419 5.99227 6.12734 6.30072 6.48795 6.77493 6.79908 6.93597 7.22910 8.39136 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.012321 B = 0.004682 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.079404 B = 5978.866819 C = 7202.657193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.009 3.991 4 C -0.180 4.180 5 C -0.169 4.169 6 C -0.068 4.068 7 C -0.093 4.093 8 C -0.052 4.052 9 C -0.179 4.179 10 C 0.119 3.881 11 N -0.542 5.542 12 C 0.289 3.711 13 O -0.320 6.320 14 C 0.415 3.585 15 F -0.205 7.205 16 F -0.210 7.210 17 C -0.136 4.136 18 C 0.057 3.943 19 C -0.483 4.483 20 H 0.070 0.930 21 C 0.036 3.964 22 N -0.830 5.830 23 Si 0.978 3.022 24 H -0.264 1.264 25 H -0.268 1.268 26 H -0.259 1.259 27 H 0.111 0.889 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.130 0.870 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.179 0.821 34 H 0.197 0.803 35 H 0.225 0.775 36 H 0.111 0.889 37 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.467 9.518 1.186 10.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.253 6.253 3 C -0.035 4.035 4 C -0.199 4.199 5 C -0.188 4.188 6 C -0.069 4.069 7 C -0.095 4.095 8 C -0.077 4.077 9 C -0.199 4.199 10 C -0.037 4.037 11 N -0.263 5.263 12 C 0.112 3.888 13 O -0.232 6.232 14 C 0.325 3.675 15 F -0.187 7.187 16 F -0.191 7.191 17 C -0.156 4.156 18 C 0.055 3.945 19 C -0.513 4.513 20 H 0.088 0.912 21 C -0.178 4.178 22 N -0.457 5.457 23 Si 0.799 3.201 24 H -0.189 1.189 25 H -0.192 1.192 26 H -0.183 1.183 27 H 0.129 0.871 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.127 0.873 32 H 0.164 0.836 33 H 0.197 0.803 34 H 0.214 0.786 35 H 0.241 0.759 36 H 0.129 0.871 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.605 9.846 0.371 10.492 hybrid contribution 0.526 -0.865 0.371 1.078 sum -3.079 8.981 0.742 9.523 Atomic orbital electron populations 1.23102 0.78557 1.04235 1.01061 1.85909 1.21571 1.27868 1.89998 1.19503 0.92247 0.83948 1.07833 1.20835 0.98996 0.91809 1.08218 1.20342 0.92646 0.95995 1.09829 1.18331 0.93323 0.90466 1.04819 1.19124 0.99749 0.93637 0.97017 1.21848 0.92172 0.97740 0.95981 1.22342 1.02791 0.93019 1.01733 1.23052 0.90600 1.01007 0.89021 1.67334 1.13234 1.17730 1.28039 1.19729 0.89522 0.90214 0.89342 1.86903 1.51782 1.41156 1.43322 1.24001 0.85423 0.75679 0.82363 1.93046 1.89011 1.55951 1.80697 1.93050 1.56961 1.92742 1.76395 1.21030 0.98690 0.90065 1.05784 1.17337 0.88824 0.94391 0.93969 1.19456 0.98613 0.96525 1.36672 0.91216 1.26632 0.99764 0.99388 0.91985 1.69893 1.19950 1.32626 1.23251 0.85321 0.76858 0.78232 0.79704 1.18893 1.19237 1.18328 0.87070 0.92754 0.93087 0.85238 0.87327 0.83622 0.80316 0.78632 0.75935 0.87080 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.81 113.37 1.11 1.92 16 2 O -0.34 -15.57 9.77 -89.18 -0.87 -16.45 16 3 C 0.01 0.47 6.72 23.11 0.16 0.63 16 4 C -0.18 -7.84 9.01 22.29 0.20 -7.64 16 5 C -0.17 -7.39 8.79 22.64 0.20 -7.19 16 6 C -0.07 -3.18 5.29 -20.08 -0.11 -3.29 16 7 C -0.09 -3.75 5.49 -19.85 -0.11 -3.86 16 8 C -0.05 -1.74 9.65 22.66 0.22 -1.52 16 9 C -0.18 -4.54 10.09 22.33 0.23 -4.31 16 10 C 0.12 3.15 11.17 84.66 0.95 4.10 16 11 N -0.54 -18.58 8.07 -308.17 -2.49 -21.07 16 12 C 0.29 11.14 7.11 85.07 0.60 11.75 16 13 O -0.32 -11.73 8.77 -89.35 -0.78 -12.51 16 14 C 0.41 11.50 6.06 113.37 0.69 12.19 16 15 F -0.21 -6.05 16.56 44.97 0.74 -5.30 16 16 F -0.21 -6.64 16.58 44.97 0.75 -5.89 16 17 C -0.14 -7.10 8.15 22.92 0.19 -6.91 16 18 C 0.06 3.14 5.57 -21.23 -0.12 3.02 16 19 C -0.48 -26.80 8.70 23.39 0.20 -26.60 16 20 H 0.07 3.88 7.65 -2.91 -0.02 3.85 16 21 C 0.04 1.84 5.15 85.24 0.44 2.28 16 22 N -0.83 -44.18 10.96 21.82 0.24 -43.94 16 23 Si 0.98 39.25 29.59 68.60 2.03 41.28 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 25 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 27 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 29 H 0.05 1.50 7.65 -2.39 -0.02 1.49 16 30 H 0.13 4.69 6.27 -2.91 -0.02 4.67 16 31 H 0.11 4.33 7.68 -2.91 -0.02 4.31 16 32 H 0.15 4.65 8.06 -2.91 -0.02 4.63 16 33 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.20 3.46 8.06 -2.91 -0.02 3.43 16 35 H 0.22 3.60 8.14 -2.39 -0.02 3.59 16 36 H 0.11 6.05 6.17 -2.91 -0.02 6.03 16 37 H 0.29 13.87 8.30 -92.70 -0.77 13.10 16 Total: -1.00 -71.12 330.24 5.59 -65.53 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 1.13 Total: 23.80 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 4.84 Total: -25.44 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -2.25 Total: -65.01 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.66 Total: -28.96 kcal Atomic # 9 Polarization: -12.68 SS G_CDS: 1.49 Total: -11.19 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -71.12 5.59 -65.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242630120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.921 kcal (2) G-P(sol) polarization free energy of solvation -71.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds