Wall clock time and date at job start Tue Mar 31 2020 12:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37840 * 119.51751 * 2 1 4 4 C 1.39936 * 119.14271 * 180.02562 * 3 2 1 5 5 C 1.48292 * 120.87636 * 179.97438 * 4 3 2 6 6 C 1.39455 * 120.05323 * 359.74445 * 5 4 3 7 7 C 1.37822 * 119.94288 * 179.74059 * 6 5 4 8 8 C 1.39013 * 120.05535 * 0.51289 * 7 6 5 9 9 O 1.35686 * 119.94833 * 179.73856 * 8 7 6 10 10 C 1.34808 * 117.00071 * 174.47278 * 9 8 7 11 11 H 1.08002 * 119.99861 * 5.06227 * 10 9 8 12 12 C 1.38660 * 120.00073 * 185.05608 * 10 9 8 13 13 N 1.31544 * 120.00213 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00038 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47247 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47072 * 120.00153 * 14 12 10 17 17 H 1.48505 * 109.47133 * 240.00333 * 14 12 10 18 18 C 1.39011 * 120.10496 * 359.76661 * 8 7 6 19 19 C 1.37821 * 120.05271 * 359.97438 * 18 8 7 20 20 C 1.39603 * 118.24799 * 359.97438 * 4 3 2 21 21 C 1.38641 * 118.96035 * 0.02562 * 20 4 3 22 22 O 1.35692 * 119.61991 * 180.02562 * 21 20 4 23 23 C 1.42910 * 116.99762 * 180.02562 * 22 21 20 24 24 F 1.39892 * 109.47104 * 59.99476 * 23 22 21 25 25 F 1.39902 * 109.46868 * 299.99398 * 23 22 21 26 26 N 1.32002 * 119.52669 * 180.29508 * 2 1 3 27 27 H 1.08997 * 109.47386 * 90.00696 * 1 2 3 28 28 H 1.09004 * 109.46927 * 210.00060 * 1 2 3 29 29 H 1.08996 * 109.47386 * 329.99318 * 1 2 3 30 30 H 1.08004 * 120.42799 * 359.97438 * 3 2 1 31 31 H 1.07995 * 120.02620 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.97289 * 180.25152 * 7 6 5 33 33 H 0.96995 * 120.00358 * 179.97438 * 13 12 10 34 34 H 1.08007 * 119.97238 * 179.97438 * 18 8 7 35 35 H 1.07994 * 120.02644 * 180.02562 * 19 18 8 36 36 H 1.07998 * 120.52184 * 180.02562 * 20 4 3 37 37 H 1.08993 * 109.47071 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.1995 0.0000 4 6 3.5854 1.1903 -0.0005 5 6 4.3548 2.4581 -0.0011 6 6 3.6852 3.6814 -0.0065 7 6 4.4024 4.8582 -0.0017 8 6 5.7922 4.8266 -0.0021 9 8 6.4961 5.9865 -0.0027 10 6 7.8358 5.8895 0.1125 11 1 8.3084 4.9184 0.1176 12 6 8.6069 7.0365 0.2245 13 7 8.0313 8.2192 0.2187 14 14 10.4633 6.9020 0.3834 15 1 10.8595 5.4710 0.3632 16 1 11.1097 7.6102 -0.7504 17 1 10.8964 7.5180 1.6634 18 6 6.4619 3.6084 -0.0026 19 6 5.7490 2.4289 -0.0021 20 6 4.2381 -0.0437 -0.0005 21 6 3.4796 -1.2043 -0.0005 22 8 4.1002 -2.4110 0.0000 23 6 3.2644 -3.5702 -0.0005 24 9 2.4576 -3.5628 -1.1433 25 9 2.4560 -3.5628 1.1412 26 7 2.1575 -1.1486 -0.0059 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6452 2.1343 -0.0004 31 1 2.6055 3.7064 -0.0107 32 1 3.8843 5.8058 -0.0017 33 1 8.5706 9.0216 0.2974 34 1 7.5417 3.5863 -0.0034 35 1 6.2697 1.4828 -0.0021 36 1 5.3169 -0.0936 -0.0005 37 1 3.8855 -4.4659 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:04 Heat of formation + Delta-G solvation = -116.724638 kcal Electronic energy + Delta-G solvation = -25437.547133 eV Core-core repulsion = 21202.356096 eV Total energy + Delta-G solvation = -4235.191036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.096 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.13791 -47.26327 -40.63213 -39.18648 -38.09222 -36.69717 -33.31126 -32.39828 -31.90556 -30.46240 -28.55293 -27.75986 -26.15590 -25.52159 -23.16174 -22.89121 -21.62864 -20.57426 -18.92583 -18.28521 -18.09743 -17.92684 -17.32310 -16.11215 -15.88185 -15.61718 -15.18637 -14.84629 -14.60978 -14.33320 -14.03183 -13.84282 -13.65464 -13.64828 -13.50073 -13.43239 -13.21224 -12.88523 -12.58251 -12.38038 -12.29355 -12.24425 -11.99278 -11.72888 -11.49550 -11.17069 -11.11948 -10.70216 -10.53909 -9.75784 -9.63677 -9.49938 -8.92574 -8.58430 -8.40711 -7.23141 -6.65319 -4.21099 0.93623 1.17612 2.07804 2.38803 2.39865 3.02749 3.04100 3.09894 3.40874 3.76857 3.81727 4.03852 4.35534 4.48312 4.62966 4.69987 4.91512 5.00841 5.04471 5.12493 5.21546 5.37657 5.44602 5.51043 5.56445 5.69642 5.90744 5.92254 6.02927 6.04022 6.28618 6.41881 6.49521 6.71039 6.88328 6.95151 7.07388 7.17736 7.24490 7.59153 7.79730 7.85803 8.79595 9.45924 10.51476 Molecular weight = 321.10amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.002521 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.845578 B =11106.211153 C =12101.107071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.169 3.831 3 C -0.210 4.210 4 C 0.081 3.919 5 C -0.177 4.177 6 C -0.044 4.044 7 C -0.195 4.195 8 C 0.166 3.834 9 O -0.164 6.164 10 C -0.393 4.393 11 H 0.097 0.903 12 C 0.041 3.959 13 N -0.853 5.853 14 Si 0.944 3.056 15 H -0.265 1.265 16 H -0.274 1.274 17 H -0.274 1.274 18 C -0.238 4.238 19 C -0.040 4.040 20 C -0.199 4.199 21 C 0.312 3.688 22 O -0.320 6.320 23 C 0.425 3.575 24 F -0.195 7.195 25 F -0.195 7.195 26 N -0.544 5.544 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.273 0.727 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.142 0.858 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 -18.111 -0.253 20.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.034 3.966 3 C -0.230 4.230 4 C 0.074 3.926 5 C -0.178 4.178 6 C -0.062 4.062 7 C -0.214 4.214 8 C 0.109 3.891 9 O -0.065 6.065 10 C -0.468 4.468 11 H 0.115 0.885 12 C -0.165 4.165 13 N -0.486 5.486 14 Si 0.769 3.231 15 H -0.189 1.189 16 H -0.199 1.199 17 H -0.199 1.199 18 C -0.257 4.257 19 C -0.058 4.058 20 C -0.219 4.219 21 C 0.135 3.865 22 O -0.233 6.233 23 C 0.335 3.665 24 F -0.177 7.177 25 F -0.177 7.177 26 N -0.268 5.268 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.157 0.843 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.132 0.868 36 H 0.160 0.840 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.357 -18.430 -0.263 20.671 hybrid contribution 1.221 0.523 0.062 1.330 sum -8.135 -17.907 -0.201 19.669 Atomic orbital electron populations 1.20710 0.88651 1.03429 1.03101 1.20700 0.96374 0.86844 0.92716 1.21866 0.93978 0.99087 1.08044 1.18938 0.92420 0.92040 0.89208 1.18016 0.92726 0.90521 1.16549 1.20699 0.98522 0.90881 0.96133 1.20155 0.91289 0.98299 1.11706 1.19531 0.91555 0.86545 0.91431 1.83945 1.20770 1.25805 1.75984 1.21500 0.78259 0.95073 1.51987 0.88536 1.25381 1.00933 0.94111 0.96050 1.70034 1.36673 0.97705 1.44170 0.85589 0.79979 0.79095 0.78480 1.18870 1.19931 1.19914 1.21107 1.00824 0.91737 1.12054 1.20846 0.92596 0.97334 0.95043 1.20984 1.01243 0.89151 1.10525 1.19331 0.88373 0.84421 0.94355 1.86782 1.35748 1.12544 1.88187 1.23045 0.81145 0.90004 0.72311 1.93092 1.76288 1.96637 1.51668 1.93094 1.76205 1.96639 1.51760 1.67030 1.07502 1.31338 1.20923 0.90340 0.90607 0.90431 0.84345 0.86398 0.85965 0.91666 0.85036 0.86838 0.84038 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.16 36.00 0.37 -0.62 16 2 C 0.17 2.27 6.77 -82.67 -0.56 1.71 16 3 C -0.21 -2.86 9.12 -39.09 -0.36 -3.22 16 4 C 0.08 1.25 5.91 -104.62 -0.62 0.63 16 5 C -0.18 -3.00 5.88 -104.85 -0.62 -3.62 16 6 C -0.04 -0.74 9.44 -39.28 -0.37 -1.11 16 7 C -0.20 -3.85 9.98 -39.45 -0.39 -4.24 16 8 C 0.17 3.76 6.65 -39.01 -0.26 3.50 16 9 O -0.16 -4.42 9.75 0.31 0.00 -4.41 16 10 C -0.39 -10.36 9.48 30.89 0.29 -10.07 16 11 H 0.10 2.34 5.19 -52.49 -0.27 2.07 16 12 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 13 N -0.85 -23.81 13.67 55.48 0.76 -23.06 16 14 Si 0.94 19.44 29.55 -169.99 -5.02 14.42 16 15 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 C -0.24 -4.86 9.15 -39.45 -0.36 -5.22 16 19 C -0.04 -0.70 9.44 -39.28 -0.37 -1.07 16 20 C -0.20 -2.95 9.43 -38.92 -0.37 -3.32 16 21 C 0.31 4.65 7.18 -17.19 -0.12 4.52 16 22 O -0.32 -4.08 10.41 -18.78 -0.20 -4.27 16 23 C 0.43 4.26 6.06 101.05 0.61 4.88 16 24 F -0.20 -2.37 16.56 2.25 0.04 -2.33 16 25 F -0.20 -2.37 16.57 2.25 0.04 -2.33 16 26 N -0.54 -8.16 7.97 -9.64 -0.08 -8.23 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.14 1.59 6.33 -52.48 -0.33 1.26 16 31 H 0.12 1.61 6.28 -52.49 -0.33 1.28 16 32 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.13 2.66 5.62 -52.48 -0.30 2.37 16 35 H 0.11 1.69 6.29 -52.49 -0.33 1.36 16 36 H 0.14 1.91 6.33 -52.49 -0.33 1.57 16 37 H 0.17 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -31.25 330.86 -5.83 -37.08 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.14 Total: 4.40 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -3.22 Total: -16.26 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.68 Total: -31.29 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.19 Total: -8.68 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.66 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.25 -5.83 -37.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.640 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds