Wall clock time and date at job start Tue Mar 31 2020 13:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34687 * 116.99530 * 2 1 4 4 O 1.21438 * 120.00162 * 359.97438 * 3 2 1 5 5 C 1.47963 * 119.99787 * 180.02562 * 3 2 1 6 6 C 1.39775 * 119.94534 * 359.97438 * 5 3 2 7 7 C 1.37624 * 120.19151 * 180.02562 * 6 5 3 8 8 C 1.39718 * 120.08206 * 359.97438 * 7 6 5 9 9 C 1.47605 * 120.05421 * 179.97438 * 8 7 6 10 10 O 1.21480 * 119.99798 * 185.43108 * 9 8 7 11 11 O 1.34732 * 119.99973 * 5.42627 * 9 8 7 12 12 C 1.40255 * 119.89083 * 0.02562 * 8 7 6 13 13 N 1.39296 * 120.09566 * 179.97438 * 12 8 7 14 14 C 1.34776 * 119.99944 * 215.55201 * 13 12 8 15 15 O 1.21268 * 120.00143 * 355.55710 * 14 13 12 16 16 C 1.50704 * 119.99858 * 175.56186 * 14 13 12 17 17 C 1.52999 * 109.47065 * 179.97438 * 16 14 13 18 18 C 1.50704 * 109.47065 * 179.97438 * 17 16 14 19 19 H 1.07994 * 119.99981 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99556 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99642 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00485 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47237 * 89.99467 * 22 20 18 24 24 H 1.48501 * 109.47208 * 209.99569 * 22 20 18 25 25 H 1.48499 * 109.46723 * 329.99413 * 22 20 18 26 26 C 1.38743 * 119.80952 * 0.24909 * 12 8 7 27 27 H 1.09004 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47338 * 300.00179 * 1 2 3 29 29 H 1.08996 * 109.47052 * 60.00274 * 1 2 3 30 30 H 1.08000 * 119.90333 * 359.97438 * 6 5 3 31 31 H 1.08004 * 119.96083 * 179.97438 * 7 6 5 32 32 H 0.96699 * 116.99809 * 180.02562 * 11 9 8 33 33 H 0.97003 * 120.00060 * 35.54686 * 13 12 8 34 34 H 1.08999 * 109.47249 * 299.99651 * 16 14 13 35 35 H 1.09005 * 109.46916 * 59.99732 * 16 14 13 36 36 H 1.08999 * 109.46955 * 300.00019 * 17 16 14 37 37 H 1.08996 * 109.47227 * 60.00020 * 17 16 14 38 38 H 0.96995 * 120.00032 * 180.02562 * 21 20 18 39 39 H 1.08008 * 120.04421 * 179.72861 * 26 12 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4020 2.2185 -0.0005 5 6 3.5410 1.2776 -0.0006 6 6 4.3012 0.1047 -0.0006 7 6 5.6759 0.1709 -0.0006 8 6 6.3172 1.4121 -0.0011 9 6 7.7916 1.4824 -0.0005 10 8 8.3484 2.5575 0.0986 11 8 8.5198 0.3541 -0.1098 12 6 5.5578 2.5913 -0.0011 13 7 6.1928 3.8311 -0.0011 14 6 5.6548 4.8638 0.6775 15 8 4.5782 4.7370 1.2211 16 6 6.3911 6.1760 0.7608 17 6 5.5682 7.1714 1.5812 18 6 6.3048 8.4835 1.6650 19 1 7.2641 8.5960 1.1819 20 6 5.7540 9.5401 2.3585 21 7 6.3970 10.6850 2.4321 22 14 4.0950 9.3453 3.1947 23 1 4.2949 8.8605 4.5841 24 1 3.3981 10.6563 3.2233 25 1 3.2733 8.3642 2.4415 26 6 4.1722 2.5193 0.0047 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.8084 -0.8563 0.0003 31 1 6.2596 -0.7378 -0.0002 32 1 9.4820 0.4504 -0.1043 33 1 7.0223 3.9512 -0.4895 34 1 7.3575 6.0206 1.2405 35 1 6.5434 6.5716 -0.2434 36 1 4.6021 7.3267 1.1011 37 1 5.4156 6.7761 2.5854 38 1 6.0097 11.4283 2.9202 39 1 3.5837 3.4250 0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598962022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:04 Heat of formation + Delta-G solvation = -206.822569 kcal Electronic energy + Delta-G solvation = -26261.223259 eV Core-core repulsion = 22133.212798 eV Total energy + Delta-G solvation = -4128.010460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.34862 -41.48861 -40.89299 -39.36359 -37.62788 -37.26344 -35.95556 -35.59655 -33.47234 -33.00105 -31.18585 -28.93953 -28.14546 -26.44527 -24.73803 -23.29816 -22.95884 -22.00075 -21.30712 -19.54321 -19.28080 -19.16895 -18.53602 -18.11617 -17.79133 -17.50515 -17.30003 -16.91211 -16.62461 -16.29614 -15.78241 -15.50693 -15.24489 -14.87677 -14.75483 -14.65377 -14.55385 -14.36341 -13.80219 -13.72023 -13.49598 -13.18381 -12.96033 -12.80780 -12.59923 -12.19060 -12.03090 -11.97625 -11.88945 -11.86805 -11.81539 -11.49494 -11.43653 -10.93013 -10.80849 -10.40986 -9.47770 -8.34293 -6.37419 -1.02483 0.03477 0.86588 1.30556 1.32598 1.42452 1.44184 1.47810 1.62761 1.88103 1.95002 2.32194 2.55755 3.01205 3.49507 3.51335 3.67837 3.91311 3.96743 4.03027 4.23697 4.30171 4.31806 4.33257 4.39569 4.64773 4.70076 4.83352 4.92552 4.92812 5.08989 5.14594 5.19233 5.29810 5.37622 5.51010 5.56134 5.58886 6.18244 6.26019 6.51859 6.68322 6.89039 6.98671 7.27749 8.81482 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.003728 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.006444 B = 7509.131128 C = 9959.255836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.507 3.493 4 O -0.533 6.533 5 C -0.080 4.080 6 C -0.078 4.078 7 C -0.032 4.032 8 C -0.134 4.134 9 C 0.537 3.463 10 O -0.537 6.537 11 O -0.491 6.491 12 C 0.188 3.812 13 N -0.657 5.657 14 C 0.516 3.484 15 O -0.553 6.553 16 C -0.113 4.113 17 C 0.005 3.995 18 C -0.530 4.530 19 H 0.051 0.949 20 C 0.016 3.984 21 N -0.942 5.942 22 Si 0.937 3.063 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.263 1.263 26 C -0.100 4.100 27 H 0.145 0.855 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.185 0.815 31 H 0.193 0.807 32 H 0.438 0.562 33 H 0.431 0.569 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.013 0.987 37 H 0.010 0.990 38 H 0.268 0.732 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -33.329 -8.701 34.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.258 6.258 3 C 0.352 3.648 4 O -0.424 6.424 5 C -0.082 4.082 6 C -0.097 4.097 7 C -0.050 4.050 8 C -0.138 4.138 9 C 0.382 3.618 10 O -0.428 6.428 11 O -0.305 6.305 12 C 0.091 3.909 13 N -0.307 5.307 14 C 0.306 3.694 15 O -0.430 6.430 16 C -0.153 4.153 17 C -0.033 4.033 18 C -0.568 4.568 19 H 0.070 0.930 20 C -0.182 4.182 21 N -0.583 5.583 22 Si 0.761 3.239 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.120 4.120 27 H 0.162 0.838 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.202 0.798 31 H 0.210 0.790 32 H 0.301 0.699 33 H 0.274 0.726 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.077 0.923 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.485 -32.640 -8.215 33.837 hybrid contribution 0.068 1.288 0.332 1.331 sum -3.416 -31.352 -7.883 32.508 Atomic orbital electron populations 1.23662 0.73992 1.06338 1.02537 1.86502 1.25322 1.30407 1.83592 1.21398 0.89343 0.81842 0.72212 1.90886 1.67478 1.37602 1.46424 1.19226 0.89335 0.94750 1.04903 1.21738 0.93469 0.98137 0.96313 1.21700 0.94209 0.96686 0.92374 1.19254 0.89933 0.93756 1.10875 1.20510 0.87848 0.81732 0.71675 1.90839 1.73355 1.31278 1.47352 1.84465 1.27509 1.34252 1.84251 1.17662 0.90911 0.85221 0.97081 1.43777 1.28341 1.07793 1.50777 1.21570 0.85386 0.86293 0.76114 1.90676 1.22543 1.83402 1.46422 1.21518 1.00100 0.89692 1.03941 1.19241 0.95464 0.93145 0.95421 1.21385 1.05975 0.96188 1.33212 0.93035 1.25773 1.00967 0.94831 0.96650 1.70017 1.40618 1.03747 1.43876 0.85851 0.80592 0.77796 0.79615 1.19312 1.20145 1.18767 1.21205 0.93088 0.98529 0.99203 0.83756 0.92350 0.91905 0.79767 0.78976 0.69857 0.72582 0.87675 0.87289 0.96847 0.97129 0.92287 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.34 -6.02 9.80 -55.96 -0.55 -6.57 16 3 C 0.51 12.80 7.90 70.40 0.56 13.35 16 4 O -0.53 -18.10 16.12 20.04 0.32 -17.78 16 5 C -0.08 -1.85 5.87 -20.07 -0.12 -1.97 16 6 C -0.08 -1.04 9.59 22.50 0.22 -0.82 16 7 C -0.03 -0.37 9.59 22.48 0.22 -0.16 16 8 C -0.13 -2.56 5.89 -19.96 -0.12 -2.68 16 9 C 0.54 9.38 8.25 70.29 0.58 9.96 16 10 O -0.54 -12.86 14.75 19.90 0.29 -12.56 16 11 O -0.49 -4.14 12.68 -56.42 -0.72 -4.86 16 12 C 0.19 5.12 6.30 38.57 0.24 5.36 16 13 N -0.66 -19.84 4.53 -303.04 -1.37 -21.21 16 14 C 0.52 19.77 7.67 87.66 0.67 20.44 16 15 O -0.55 -25.21 13.42 -2.99 -0.04 -25.25 16 16 C -0.11 -4.54 5.64 29.85 0.17 -4.37 16 17 C 0.01 0.27 3.33 29.85 0.10 0.37 16 18 C -0.53 -31.33 9.66 25.60 0.25 -31.08 16 19 H 0.05 3.20 7.99 -2.91 -0.02 3.18 16 20 C 0.02 0.95 5.47 84.65 0.46 1.41 16 21 N -0.94 -60.00 13.96 21.45 0.30 -59.70 16 22 Si 0.94 47.98 27.47 68.60 1.88 49.86 16 23 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 25 H -0.26 -13.51 6.54 99.48 0.65 -12.86 16 26 C -0.10 -2.98 8.22 22.64 0.19 -2.80 16 27 H 0.14 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.19 1.15 7.59 -2.91 -0.02 1.13 16 31 H 0.19 0.74 7.61 -2.91 -0.02 0.72 16 32 H 0.44 0.13 9.11 -74.06 -0.67 -0.54 16 33 H 0.43 11.36 6.57 -92.71 -0.61 10.75 16 34 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 35 H 0.11 3.95 8.14 -2.38 -0.02 3.94 16 36 H 0.01 0.71 7.16 -2.39 -0.02 0.69 16 37 H 0.01 0.55 7.53 -2.39 -0.02 0.53 16 38 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 39 H 0.13 4.87 5.81 -2.91 -0.02 4.85 16 Total: -1.00 -85.67 345.79 4.53 -81.14 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -0.21 Total: 8.35 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.61 Total: 8.57 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.07 Total: -80.91 kcal Atomic # 8 Polarization: -66.33 SS G_CDS: -0.69 Total: -67.01 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.88 Total: 49.86 kcal Total: -85.67 4.53 -81.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598962022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.680 kcal (2) G-P(sol) polarization free energy of solvation -85.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds