Wall clock time and date at job start Tue Mar 31 2020 12:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34747 * 117.00183 * 2 1 4 4 O 1.21486 * 119.99475 * 0.02562 * 3 2 1 5 5 C 1.47576 * 120.00204 * 180.02562 * 3 2 1 6 6 C 1.39419 * 120.13326 * 53.75148 * 5 3 2 7 7 C 1.37916 * 120.08028 * 179.97438 * 6 5 3 8 8 C 1.39106 * 120.34598 * 0.02562 * 7 6 5 9 9 N 1.39446 * 119.87297 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00212 * 215.81501 * 9 8 7 11 11 O 1.21280 * 119.99910 * 355.17019 * 10 9 8 12 12 C 1.50703 * 120.00369 * 175.17007 * 10 9 8 13 13 H 1.09000 * 109.46819 * 299.99772 * 12 10 9 14 14 C 1.52995 * 109.46990 * 60.00169 * 12 10 9 15 15 C 1.50700 * 109.47033 * 180.02562 * 12 10 9 16 16 H 1.08002 * 120.00340 * 0.02562 * 15 12 10 17 17 C 1.37873 * 119.99812 * 180.02562 * 15 12 10 18 18 N 1.31517 * 120.00183 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00317 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.46633 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47469 * 119.99470 * 19 17 15 22 22 H 1.48500 * 109.47043 * 240.00108 * 19 17 15 23 23 C 1.39055 * 120.25745 * 359.74688 * 8 7 6 24 24 C 1.38979 * 119.91415 * 0.48721 * 23 8 7 25 25 C 1.47867 * 120.16859 * 179.78801 * 24 23 8 26 26 O 1.21446 * 120.00315 * 186.21534 * 25 24 23 27 27 O 1.34702 * 120.00212 * 6.49139 * 25 24 23 28 28 H 1.08995 * 109.47169 * 299.99850 * 1 2 3 29 29 H 1.09004 * 109.47283 * 60.00212 * 1 2 3 30 30 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.95758 * 359.97438 * 6 5 3 32 32 H 1.07997 * 119.83036 * 180.02562 * 7 6 5 33 33 H 0.97005 * 120.00244 * 35.80874 * 9 8 7 34 34 H 1.09003 * 109.47452 * 180.02562 * 14 12 10 35 35 H 1.09009 * 109.47331 * 299.99805 * 14 12 10 36 36 H 1.08999 * 109.47549 * 59.99578 * 14 12 10 37 37 H 0.96996 * 120.00512 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.04075 * 180.27891 * 23 8 7 39 39 H 0.96695 * 117.00301 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5375 1.2778 -0.0006 6 6 4.2733 0.6027 -0.9734 7 6 5.6506 0.6760 -0.9732 8 6 6.3145 1.4218 -0.0047 9 7 7.7073 1.4896 -0.0141 10 6 8.3879 1.5308 1.1485 11 8 7.7879 1.5974 2.2004 12 6 9.8945 1.4942 1.1414 13 1 10.2332 0.5714 0.6706 14 6 10.4301 2.6936 0.3569 15 6 10.4049 1.5515 2.5582 16 1 9.7082 1.6083 3.3814 17 6 11.7615 1.5314 2.8034 18 7 12.6101 1.4617 1.8010 19 14 12.3945 1.6031 4.5595 20 1 11.2453 1.6773 5.4971 21 1 13.1917 0.3841 4.8485 22 1 13.2493 2.8055 4.7288 23 6 5.5945 2.1047 0.9694 24 6 4.2065 2.0342 0.9823 25 6 3.4355 2.7543 2.0184 26 8 2.2333 2.6012 2.0968 27 8 4.0657 3.5844 2.8718 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.7643 0.0215 -1.7281 32 1 6.2166 0.1518 -1.7290 33 1 8.1864 1.5071 -0.8574 34 1 11.5197 2.6669 0.3514 35 1 10.0608 2.6517 -0.6679 36 1 10.0912 3.6164 0.8277 37 1 13.5644 1.4472 1.9735 38 1 6.1133 2.6863 1.7170 39 1 3.5196 4.0331 3.5316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598978135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:08 Heat of formation + Delta-G solvation = -176.905128 kcal Electronic energy + Delta-G solvation = -26659.685838 eV Core-core repulsion = 22532.972695 eV Total energy + Delta-G solvation = -4126.713143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08465 -39.98852 -39.74472 -38.04787 -36.48588 -35.93578 -34.51187 -33.96130 -31.66620 -31.09660 -29.81992 -27.69709 -25.28811 -25.12840 -24.21078 -22.55781 -22.02012 -20.63982 -19.67570 -18.45840 -18.08459 -17.59678 -17.03333 -16.51402 -16.29121 -16.19286 -15.66783 -15.62611 -15.06138 -14.72438 -14.63878 -14.03914 -13.86900 -13.39547 -13.37367 -13.14000 -12.93917 -12.66678 -12.53322 -12.19577 -11.92686 -11.68451 -11.54873 -11.14257 -10.93290 -10.88898 -10.78403 -10.70197 -10.48713 -10.39536 -10.16088 -10.08732 -9.33605 -9.11992 -8.86306 -8.48058 -8.18503 -6.15182 -4.19377 0.33984 0.96922 2.24688 2.43175 2.63816 2.89634 3.25525 3.28040 3.33869 3.36666 3.45893 3.67702 4.37814 4.51778 4.67779 4.78510 4.97645 5.04876 5.07348 5.12258 5.18849 5.27116 5.36781 5.62321 5.76784 5.87908 6.03472 6.16525 6.26904 6.31925 6.42817 6.45355 6.64048 6.73300 6.90920 7.28381 7.57334 7.70090 7.73036 7.85910 7.93198 8.16337 8.78986 8.90485 9.47190 10.92377 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.003007 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.159064 B = 9309.440069 C = 9975.814403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.514 3.486 4 O -0.475 6.475 5 C -0.089 4.089 6 C -0.060 4.060 7 C -0.129 4.129 8 C 0.181 3.819 9 N -0.686 5.686 10 C 0.518 3.482 11 O -0.515 6.515 12 C 0.033 3.967 13 H 0.059 0.941 14 C -0.136 4.136 15 C -0.506 4.506 16 H 0.077 0.923 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.901 3.099 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.072 4.072 24 C -0.063 4.063 25 C 0.523 3.477 26 O -0.496 6.496 27 O -0.502 6.502 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.413 0.587 34 H 0.097 0.903 35 H 0.013 0.987 36 H 0.034 0.966 37 H 0.262 0.738 38 H 0.166 0.834 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.439 -1.523 -8.154 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.356 3.644 4 O -0.360 6.360 5 C -0.091 4.091 6 C -0.079 4.079 7 C -0.150 4.150 8 C 0.084 3.916 9 N -0.332 5.332 10 C 0.310 3.690 11 O -0.388 6.388 12 C 0.012 3.988 13 H 0.076 0.924 14 C -0.194 4.194 15 C -0.544 4.544 16 H 0.095 0.905 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.728 3.272 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.092 4.092 24 C -0.065 4.065 25 C 0.366 3.634 26 O -0.385 6.385 27 O -0.313 6.313 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.250 0.750 34 H 0.115 0.885 35 H 0.032 0.968 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.184 0.816 39 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -16.890 -1.416 -7.627 18.586 hybrid contribution 0.117 0.336 0.868 0.938 sum -16.773 -1.079 -6.759 18.116 Atomic orbital electron populations 1.23243 0.76270 1.03455 1.02631 1.86599 1.23351 1.32689 1.84594 1.20863 0.88604 0.81826 0.73085 1.90857 1.66194 1.35858 1.43080 1.18808 0.89605 1.02160 0.98557 1.20909 0.93171 0.96465 0.97378 1.21164 0.94183 0.98968 1.00646 1.18051 0.84863 0.93536 0.95160 1.44177 1.03149 1.74251 1.11626 1.22490 0.92705 0.72326 0.81492 1.90568 1.70717 1.46341 1.31187 1.18937 0.82756 0.97506 0.99624 0.92362 1.21796 1.05615 0.97308 0.94691 1.21147 0.91923 1.50403 0.90918 0.90532 1.24938 0.96707 0.94809 0.97628 1.69861 1.02403 1.50705 1.30428 0.86375 0.78821 0.77547 0.84414 1.19476 1.20979 1.20967 1.21713 0.91320 0.97020 0.99165 1.18709 0.93052 0.99848 0.94878 1.20751 0.85424 0.77041 0.80190 1.90953 1.15104 1.62276 1.70126 1.84609 1.45611 1.56316 1.44777 0.91726 0.92030 0.88166 0.83847 0.83934 0.74969 0.88450 0.96774 0.94651 0.92830 0.81621 0.72689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.36 -4.54 10.57 -40.62 -0.43 -4.97 16 3 C 0.51 7.66 6.07 34.54 0.21 7.87 16 4 O -0.47 -8.24 14.40 -27.30 -0.39 -8.63 16 5 C -0.09 -1.25 5.79 -104.63 -0.61 -1.85 16 6 C -0.06 -0.66 9.76 -39.26 -0.38 -1.04 16 7 C -0.13 -1.41 9.94 -39.38 -0.39 -1.80 16 8 C 0.18 2.59 6.28 -83.77 -0.53 2.07 16 9 N -0.69 -10.39 5.23 -9.88 -0.05 -10.44 16 10 C 0.52 10.50 6.98 -10.98 -0.08 10.43 16 11 O -0.52 -11.98 12.93 5.56 0.07 -11.91 16 12 C 0.03 0.74 2.65 -92.92 -0.25 0.49 16 13 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 14 C -0.14 -2.82 8.86 37.15 0.33 -2.49 16 15 C -0.51 -13.41 8.38 -34.44 -0.29 -13.70 16 16 H 0.08 2.15 6.75 -52.49 -0.35 1.80 16 17 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 18 N -0.89 -23.82 11.32 55.43 0.63 -23.19 16 19 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.07 -1.14 8.24 -39.00 -0.32 -1.46 16 24 C -0.06 -0.97 5.90 -104.67 -0.62 -1.59 16 25 C 0.52 8.20 8.16 34.67 0.28 8.48 16 26 O -0.50 -8.72 13.72 -27.26 -0.37 -9.09 16 27 O -0.50 -6.60 12.70 -40.50 -0.51 -7.11 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.41 4.96 8.11 -40.82 -0.33 4.63 16 34 H 0.10 2.27 6.07 -51.93 -0.32 1.96 16 35 H 0.01 0.22 7.46 -51.92 -0.39 -0.16 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.17 3.00 5.83 -52.49 -0.31 2.69 16 39 H 0.41 3.33 9.11 45.56 0.42 3.74 16 LS Contribution 343.05 15.07 5.17 5.17 Total: -1.00 -34.07 343.05 -5.95 -40.02 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.37 Total: 5.95 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -1.66 Total: 8.32 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.58 Total: -33.63 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.64 Total: -41.72 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.07 -5.95 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598978135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.888 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds