Wall clock time and date at job start Tue Mar 31 2020 12:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47204 * 2 1 4 4 C 1.50701 * 109.47601 * 240.00222 * 2 1 3 5 5 O 1.20821 * 120.00234 * 240.00205 * 4 2 1 6 6 O 1.34230 * 119.99680 * 59.99292 * 4 2 1 7 7 C 1.50707 * 109.47450 * 120.00171 * 2 1 3 8 8 O 1.20824 * 120.00113 * 120.00181 * 7 2 1 9 9 O 1.34231 * 119.99830 * 300.00343 * 7 2 1 10 10 C 1.45197 * 117.00139 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47465 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00005 * 4.96584 * 11 10 9 13 13 N 1.34770 * 120.00492 * 184.96687 * 11 10 9 14 14 C 1.37147 * 119.99781 * 4.32112 * 13 11 10 15 15 H 1.07995 * 120.00010 * 59.09810 * 14 13 11 16 16 C 1.38884 * 119.99883 * 239.09893 * 14 13 11 17 17 N 1.31422 * 120.00499 * 357.01000 * 16 14 13 18 18 Si 1.86799 * 120.00016 * 177.00957 * 16 14 13 19 19 H 1.48500 * 109.47268 * 90.00076 * 18 16 14 20 20 H 1.48501 * 109.47289 * 209.99776 * 18 16 14 21 21 H 1.48501 * 109.47210 * 330.00013 * 18 16 14 22 22 C 1.39789 * 120.00753 * 184.32306 * 13 11 10 23 23 C 1.38956 * 120.08191 * 174.20367 * 22 13 11 24 24 C 1.38089 * 119.92073 * 179.97438 * 23 22 13 25 25 C 1.38308 * 120.07812 * 359.97438 * 24 23 22 26 26 C 1.38311 * 120.15557 * 0.04622 * 25 24 23 27 27 C 1.38079 * 120.07818 * 359.94713 * 26 25 24 28 28 H 1.08996 * 109.47411 * 59.99945 * 1 2 3 29 29 H 1.09003 * 109.46778 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47082 * 299.99368 * 1 2 3 31 31 H 0.96701 * 116.99956 * 180.02562 * 6 4 2 32 32 H 1.09008 * 109.46632 * 59.99677 * 10 9 7 33 33 H 1.08997 * 109.47121 * 300.00653 * 10 9 7 34 34 H 0.97000 * 120.00596 * 184.99456 * 17 16 14 35 35 H 1.08001 * 120.04075 * 359.70007 * 23 22 13 36 36 H 1.07994 * 119.95928 * 179.97438 * 24 23 22 37 37 H 1.07999 * 119.92431 * 179.97438 * 25 24 23 38 38 H 1.07996 * 119.95917 * 179.97438 * 26 25 24 39 39 H 1.08005 * 120.04136 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7270 -1.6927 -1.1196 6 8 1.7080 -0.2517 -2.4496 7 6 2.0324 -0.7105 1.2305 8 8 2.7271 -1.6928 1.1196 9 8 1.7081 -0.2519 2.4496 10 6 2.2268 -0.9864 3.5897 11 6 1.7629 -0.3293 4.8640 12 8 0.9916 0.6055 4.8182 13 7 2.2052 -0.7802 6.0545 14 6 3.1446 -1.7782 6.1037 15 1 4.1070 -1.6374 5.6342 16 6 2.8584 -2.9697 6.7573 17 7 1.7101 -3.1190 7.3788 18 14 4.1056 -4.3604 6.7529 19 1 5.0057 -4.2217 7.9259 20 1 3.3954 -5.6625 6.8252 21 1 4.9073 -4.3024 5.5043 22 6 1.7064 -0.2310 7.2392 23 6 2.0692 -0.7742 8.4656 24 6 1.5749 -0.2287 9.6339 25 6 0.7201 0.8575 9.5844 26 6 0.3565 1.4005 8.3654 27 6 0.8470 0.8601 7.1932 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 2.0535 -0.7409 -3.2088 32 1 3.3164 -0.9861 3.5568 33 1 1.8627 -2.0132 3.5565 34 1 1.5391 -3.9218 7.8957 35 1 2.7335 -1.6249 8.5049 36 1 1.8562 -0.6506 10.5874 37 1 0.3346 1.2819 10.4996 38 1 -0.3115 2.2483 8.3304 39 1 0.5630 1.2849 6.2417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609706517.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:20 Heat of formation + Delta-G solvation = -151.174693 kcal Electronic energy + Delta-G solvation = -26923.659361 eV Core-core repulsion = 22798.061974 eV Total energy + Delta-G solvation = -4125.597387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05078 -40.00061 -39.43663 -37.31667 -36.45190 -35.79539 -35.10325 -33.86305 -32.07962 -29.79884 -29.55256 -27.45554 -25.66966 -25.23663 -23.35114 -21.79296 -21.21474 -20.32388 -19.63540 -18.36350 -17.94282 -17.31893 -16.80198 -16.62388 -15.92261 -15.81510 -15.70371 -15.53306 -15.17926 -14.41323 -14.36974 -13.75366 -13.64382 -13.16752 -13.05984 -12.89092 -12.60584 -12.42864 -12.29396 -12.13599 -12.01486 -11.77475 -11.64816 -11.53149 -11.37607 -11.09519 -10.87100 -10.71793 -10.51249 -10.35103 -10.06645 -10.01356 -9.25977 -8.83158 -8.25661 -7.80644 -6.98756 -6.34704 -4.71362 1.98922 2.13860 2.30109 2.36677 2.56350 3.00971 3.06050 3.10867 3.13403 3.58470 3.88334 4.18372 4.57548 4.65781 4.68672 4.74539 5.07573 5.13683 5.41694 5.48212 5.52861 5.72709 5.84053 5.87017 5.91356 6.03349 6.15225 6.26166 6.60652 6.69805 6.73066 6.86654 7.11959 7.16287 7.49361 7.58143 7.65155 7.67962 7.73422 7.89515 7.99458 8.36954 8.72970 9.08465 9.45964 10.36971 Molecular weight = 321.11amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.003778 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.991015 B = 7408.692120 C = 9071.591782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 H 0.146 0.854 4 C 0.479 3.521 5 O -0.469 6.469 6 O -0.514 6.514 7 C 0.458 3.542 8 O -0.468 6.468 9 O -0.333 6.333 10 C 0.074 3.926 11 C 0.498 3.502 12 O -0.547 6.547 13 N -0.378 5.378 14 C -0.380 4.380 15 H 0.097 0.903 16 C 0.057 3.943 17 N -0.840 5.840 18 Si 0.918 3.082 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.262 1.262 22 C 0.178 3.822 23 C -0.089 4.089 24 C -0.128 4.128 25 C -0.169 4.169 26 C -0.124 4.124 27 C -0.190 4.190 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.413 0.587 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.277 0.723 35 H 0.137 0.863 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 4.983 -10.630 11.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 H 0.163 0.837 4 C 0.318 3.682 5 O -0.353 6.353 6 O -0.328 6.328 7 C 0.297 3.703 8 O -0.353 6.353 9 O -0.248 6.248 10 C -0.002 4.002 11 C 0.289 3.711 12 O -0.430 6.430 13 N -0.088 5.088 14 C -0.507 4.507 15 H 0.114 0.886 16 C -0.154 4.154 17 N -0.471 5.471 18 Si 0.743 3.257 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.186 1.186 22 C 0.083 3.917 23 C -0.110 4.110 24 C -0.147 4.147 25 C -0.188 4.188 26 C -0.143 4.143 27 C -0.210 4.210 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.273 0.727 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.155 0.845 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.301 4.817 -10.286 11.433 hybrid contribution 0.891 -1.443 -0.101 1.699 sum -0.410 3.374 -10.388 10.930 Atomic orbital electron populations 1.21768 0.88699 1.04170 1.05352 1.20399 1.00657 1.01778 0.86456 0.83679 1.22540 0.78166 0.83048 0.84484 1.90903 1.33428 1.24450 1.86517 1.84457 1.72682 1.59182 1.16441 1.22623 0.79055 0.83625 0.85007 1.90837 1.33448 1.24227 1.86742 1.86416 1.69393 1.55118 1.13913 1.22627 1.00326 0.95903 0.81378 1.20206 0.81418 0.84404 0.85120 1.90230 1.36757 1.29745 1.86296 1.40785 1.35023 1.31698 1.01260 1.19426 0.96131 0.92456 1.42728 0.88593 1.25708 0.96298 0.98268 0.95098 1.70026 1.21705 1.28167 1.27206 0.86039 0.80077 0.79966 0.79607 1.19675 1.20363 1.18641 1.18288 0.94833 0.91843 0.86772 1.21099 1.01187 0.98657 0.90060 1.20785 0.99495 0.97158 0.97313 1.20816 1.01964 0.99135 0.96909 1.20844 1.00745 1.00091 0.92639 1.22763 0.99459 0.97372 1.01372 0.89744 0.91467 0.88853 0.72727 0.88327 0.87872 0.91246 0.84510 0.87764 0.88191 0.87706 0.80981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.06 37.15 0.34 -0.97 16 2 C -0.07 -0.82 3.27 -92.92 -0.30 -1.12 16 3 H 0.15 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.48 5.62 7.62 36.01 0.27 5.89 16 5 O -0.47 -7.63 14.95 -26.86 -0.40 -8.04 16 6 O -0.51 -3.97 13.33 -39.26 -0.52 -4.50 16 7 C 0.46 7.39 7.25 36.01 0.26 7.65 16 8 O -0.47 -9.16 13.94 -26.86 -0.37 -9.54 16 9 O -0.33 -5.96 9.66 -45.89 -0.44 -6.40 16 10 C 0.07 1.47 4.85 36.00 0.17 1.65 16 11 C 0.50 11.56 7.65 -10.99 -0.08 11.47 16 12 O -0.55 -13.22 12.90 -14.05 -0.18 -13.40 16 13 N -0.38 -9.28 2.64 -58.98 -0.16 -9.43 16 14 C -0.38 -9.11 7.48 -14.93 -0.11 -9.22 16 15 H 0.10 2.18 7.66 -52.49 -0.40 1.78 16 16 C 0.06 1.34 4.04 -17.49 -0.07 1.27 16 17 N -0.84 -21.14 10.71 55.49 0.59 -20.55 16 18 Si 0.92 18.49 29.56 -169.99 -5.02 13.47 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 C 0.18 4.41 6.04 -83.69 -0.51 3.90 16 23 C -0.09 -2.11 7.72 -39.37 -0.30 -2.42 16 24 C -0.13 -2.67 10.04 -39.61 -0.40 -3.07 16 25 C -0.17 -3.31 10.04 -39.53 -0.40 -3.71 16 26 C -0.12 -2.55 10.04 -39.61 -0.40 -2.95 16 27 C -0.19 -4.43 9.05 -39.37 -0.36 -4.79 16 28 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 31 H 0.41 1.50 9.10 45.56 0.41 1.92 16 32 H 0.10 1.88 7.75 -51.92 -0.40 1.48 16 33 H 0.10 2.10 8.13 -51.93 -0.42 1.68 16 34 H 0.28 6.60 8.32 -40.82 -0.34 6.26 16 35 H 0.14 3.36 5.11 -52.49 -0.27 3.09 16 36 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.17 4.14 4.52 -56.31 -0.25 3.88 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -32.27 340.43 -6.69 -38.96 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.43 Total: 10.71 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -1.88 Total: 3.59 kcal Atomic # 7 Polarization: -30.42 SS G_CDS: 0.44 Total: -29.98 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.92 Total: -41.87 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.27 -6.69 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609706517.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.214 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds