Wall clock time and date at job start Tue Mar 31 2020 13:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00041 * 2 1 4 4 H 1.09001 * 109.44906 * 329.96323 * 3 2 1 5 5 C 1.53034 * 109.46292 * 89.93209 * 3 2 1 6 6 C 1.53199 * 109.31366 * 181.38364 * 5 3 2 7 7 N 1.46924 * 108.77462 * 305.36497 * 6 5 3 8 8 S 1.65606 * 120.62781 * 233.63185 * 7 6 5 9 9 O 1.42101 * 104.27508 * 209.04786 * 8 7 6 10 10 O 1.42101 * 104.27391 * 336.90289 * 8 7 6 11 11 C 1.81393 * 104.44977 * 92.97670 * 8 7 6 12 12 C 1.53006 * 109.46961 * 179.97438 * 11 8 7 13 13 C 1.50702 * 109.47027 * 180.02562 * 12 11 8 14 14 H 1.07995 * 120.00183 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99641 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00329 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99690 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47304 * 90.00314 * 17 15 13 19 19 H 1.48505 * 109.47236 * 210.00457 * 17 15 13 20 20 H 1.48504 * 109.47020 * 330.00066 * 17 15 13 21 21 C 1.46924 * 118.73932 * 53.60597 * 7 6 5 22 22 H 1.09004 * 109.70119 * 66.25047 * 21 7 6 23 23 C 1.50700 * 109.58236 * 186.60393 * 21 7 6 24 24 O 1.20818 * 120.00516 * 52.88137 * 23 21 7 25 25 O 1.34230 * 119.99518 * 232.59797 * 23 21 7 26 26 C 1.53041 * 109.45820 * 209.99780 * 3 2 1 27 27 H 1.09008 * 109.47510 * 300.00537 * 1 2 3 28 28 H 1.08999 * 109.47146 * 59.99880 * 1 2 3 29 29 H 1.08999 * 109.47617 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.50005 * 301.33699 * 5 3 2 31 31 H 1.09001 * 109.49981 * 61.39775 * 5 3 2 32 32 H 1.08999 * 109.58743 * 65.15229 * 6 5 3 33 33 H 1.08998 * 109.58536 * 185.43085 * 6 5 3 34 34 H 1.08996 * 109.47568 * 299.99520 * 11 8 7 35 35 H 1.09004 * 109.47113 * 60.00222 * 11 8 7 36 36 H 1.09006 * 109.47096 * 299.99886 * 12 11 8 37 37 H 1.08996 * 109.47245 * 60.00014 * 12 11 8 38 38 H 0.96999 * 120.00422 * 180.02562 * 16 15 13 39 39 H 0.96701 * 116.99681 * 180.27892 * 25 23 21 40 40 H 1.09000 * 109.49865 * 58.66169 * 26 3 2 41 41 H 1.09005 * 109.52890 * 298.58062 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9989 -0.5145 5 6 2.2160 1.7720 1.4429 6 6 2.8071 3.1853 1.4390 7 7 4.0302 3.1841 0.6249 8 16 5.4573 3.7506 1.2455 9 8 6.1626 4.2389 0.1127 10 8 5.0612 4.6237 2.2943 11 6 6.2747 2.2775 1.9180 12 6 7.6211 2.6746 2.5269 13 6 8.3005 1.4507 3.0850 14 1 7.8204 0.4861 3.0123 15 6 9.5357 1.5624 3.6875 16 7 10.1206 2.7370 3.7756 17 14 10.3782 0.0453 4.3787 18 1 11.2238 -0.5740 3.3267 19 1 11.2288 0.4337 5.5324 20 1 9.3519 -0.9300 4.8267 21 6 3.9632 2.6704 -0.7499 22 1 3.3370 3.3246 -1.3566 23 6 5.3504 2.6132 -1.3359 24 8 6.2328 2.0376 -0.7445 25 8 5.6043 3.1968 -2.5177 26 6 3.3592 1.2629 -0.7215 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.2581 1.7796 1.9630 31 1 2.9002 1.0923 1.9509 32 1 2.0852 3.8821 1.0130 33 1 3.0452 3.4846 2.4597 34 1 5.6448 1.8319 2.6878 35 1 6.4371 1.5550 1.1181 36 1 8.2509 3.1201 1.7567 37 1 7.4591 3.3973 3.3266 38 1 10.9897 2.8155 4.1992 39 1 6.5081 3.1301 -2.8551 40 1 3.2150 0.9082 -1.7420 41 1 4.0335 0.5883 -0.1938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610240340.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:17 Heat of formation + Delta-G solvation = -199.793963 kcal Electronic energy + Delta-G solvation = -27133.216234 eV Core-core repulsion = 23140.954508 eV Total energy + Delta-G solvation = -3992.261726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.117 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.71595 -39.12465 -36.99713 -36.77001 -35.81971 -35.51541 -33.77362 -31.86658 -31.74559 -31.03397 -27.16261 -25.57200 -25.25467 -24.00389 -21.80384 -21.66327 -20.58996 -18.72985 -18.25067 -17.77567 -16.88299 -16.60116 -16.42086 -16.02844 -15.54885 -15.48729 -15.26867 -14.78107 -14.71219 -14.47076 -14.21506 -13.60094 -13.37222 -13.22863 -12.97586 -12.69366 -12.44303 -11.94943 -11.79367 -11.67631 -11.66005 -11.62078 -11.56041 -11.33034 -11.08556 -10.99313 -10.90803 -10.88965 -10.52612 -10.35879 -10.03996 -9.82223 -9.72977 -9.37084 -8.88795 -8.42021 -6.04577 -4.08746 0.70569 2.10139 2.62952 3.03577 3.31626 3.37085 3.40565 3.48670 4.26820 4.33655 4.37432 4.44515 4.60867 4.68892 4.77854 4.86499 4.94707 5.02226 5.05540 5.13175 5.21094 5.30693 5.34545 5.38421 5.46992 5.55158 5.76805 5.80076 5.85204 5.97605 6.02148 6.36756 6.51105 6.88170 6.88701 7.41107 7.47897 7.88675 7.95602 8.27833 8.94390 9.54911 11.06773 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.004440 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.909283 B = 6304.807661 C = 6878.676728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.097 3.903 4 H 0.067 0.933 5 C -0.162 4.162 6 C 0.127 3.873 7 N -0.999 5.999 8 S 2.581 3.419 9 O -0.963 6.963 10 O -0.964 6.964 11 C -0.580 4.580 12 C 0.033 3.967 13 C -0.512 4.512 14 H 0.061 0.939 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.174 3.826 22 H 0.108 0.892 23 C 0.485 3.515 24 O -0.498 6.498 25 O -0.503 6.503 26 C -0.125 4.125 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.148 0.852 36 H 0.032 0.968 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.418 0.582 40 H 0.089 0.911 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.556 -2.136 -11.042 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.040 3.960 4 H 0.085 0.915 5 C -0.201 4.201 6 C 0.002 3.998 7 N -0.837 5.837 8 S 2.683 3.317 9 O -0.953 6.953 10 O -0.954 6.954 11 C -0.714 4.714 12 C -0.006 4.006 13 C -0.552 4.552 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.532 5.532 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.065 3.935 22 H 0.126 0.874 23 C 0.326 3.674 24 O -0.387 6.387 25 O -0.314 6.314 26 C -0.164 4.164 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.166 0.834 36 H 0.050 0.950 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.278 0.722 40 H 0.107 0.893 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.217 -1.364 -10.717 22.923 hybrid contribution 0.892 -1.199 0.304 1.525 sum -19.325 -2.563 -10.413 22.101 Atomic orbital electron populations 1.22800 0.81003 1.02806 0.99982 1.87941 1.19645 1.27391 1.95036 1.21934 0.93901 0.84804 0.95410 0.91512 1.22519 1.02577 0.97519 0.97534 1.21402 0.85659 0.96378 0.96363 1.58123 1.26068 1.80322 1.19147 1.06073 0.72909 0.78240 0.74489 1.93469 1.72141 1.79667 1.50006 1.93522 1.80905 1.63274 1.57714 1.30606 1.11248 1.17584 1.11997 1.18914 0.87067 0.98592 0.96049 1.20998 1.03023 0.93480 1.37675 0.92039 1.25061 0.97216 0.96268 0.96006 1.69960 1.16259 1.23020 1.43945 0.86475 0.79471 0.82748 0.78612 1.20500 1.21080 1.19758 1.20162 0.91834 0.97365 0.84099 0.87412 1.22705 0.90127 0.74818 0.79715 1.90772 1.47013 1.41503 1.59373 1.84327 1.39298 1.71522 1.36267 1.21954 0.96845 0.94867 1.02771 0.93911 0.94025 0.89623 0.90117 0.89719 0.90746 0.87736 0.86888 0.83387 0.94992 0.95415 0.92662 0.72213 0.89251 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.38 -3.74 10.35 -35.23 -0.36 -4.10 16 3 C 0.10 0.87 2.57 -26.69 -0.07 0.80 16 4 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 5 C -0.16 -1.49 5.69 -26.61 -0.15 -1.64 16 6 C 0.13 1.36 6.33 -3.71 -0.02 1.33 16 7 N -1.00 -13.83 3.22 -107.70 -0.35 -14.18 16 8 S 2.58 49.83 4.74 -107.50 -0.51 49.32 16 9 O -0.96 -20.56 14.00 -68.13 -0.95 -21.51 16 10 O -0.96 -20.54 16.62 -57.54 -0.96 -21.49 16 11 C -0.58 -12.34 5.66 37.16 0.21 -12.12 16 12 C 0.03 0.90 4.98 -27.88 -0.14 0.76 16 13 C -0.51 -14.84 9.11 -34.44 -0.31 -15.15 16 14 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 17 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.17 2.07 3.32 -68.75 -0.23 1.84 16 22 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 23 C 0.49 7.15 4.56 36.01 0.16 7.32 16 24 O -0.50 -9.07 12.42 -26.54 -0.33 -9.40 16 25 O -0.50 -6.19 13.42 -42.09 -0.57 -6.76 16 26 C -0.13 -1.27 5.00 -26.61 -0.13 -1.41 16 27 H 0.04 0.24 7.84 -51.92 -0.41 -0.17 16 28 H 0.04 0.22 8.08 -51.93 -0.42 -0.20 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 1.19 7.01 -51.93 -0.36 0.83 16 34 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 35 H 0.15 3.12 5.44 -51.92 -0.28 2.84 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.42 3.81 9.10 45.56 0.41 4.23 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -37.71 344.79 -8.01 -45.72 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.21 Total: 2.38 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 0.31 Total: -15.44 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.39 Total: -40.83 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -3.17 Total: -63.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 49.83 SS G_CDS: -0.51 Total: 49.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.71 -8.01 -45.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610240340.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.071 kcal (2) G-P(sol) polarization free energy of solvation -37.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds