Wall clock time and date at job start Tue Mar 31 2020 14:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47132 * 2 1 4 4 N 1.46901 * 109.47064 * 186.53174 * 3 2 1 5 5 C 1.46896 * 110.99931 * 299.48593 * 4 3 2 6 6 C 1.52998 * 109.46997 * 86.51839 * 5 4 3 7 7 C 1.53001 * 109.47259 * 176.22303 * 6 5 4 8 8 S 1.81002 * 109.47399 * 180.02562 * 7 6 5 9 9 C 1.76201 * 99.99901 * 180.02562 * 8 7 6 10 10 H 1.07993 * 119.99914 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99581 * 180.02562 * 9 8 7 12 12 N 1.31635 * 119.99429 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00126 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47185 * 90.00281 * 13 11 9 15 15 H 1.48496 * 109.47240 * 210.00120 * 13 11 9 16 16 H 1.48502 * 109.47313 * 330.00232 * 13 11 9 17 17 C 1.46901 * 110.99883 * 175.53632 * 4 3 2 18 18 H 1.09001 * 110.05065 * 174.19699 * 17 4 3 19 19 C 1.53881 * 110.02364 * 295.59662 * 17 4 3 20 20 C 1.54169 * 108.59353 * 166.40836 * 19 17 4 21 21 S 1.82919 * 105.08616 * 332.15658 * 20 19 17 22 22 O 1.42098 * 109.35327 * 115.52268 * 21 20 19 23 23 O 1.42101 * 109.35494 * 248.72600 * 21 20 19 24 24 C 1.54739 * 109.87485 * 52.88153 * 17 4 3 25 25 H 1.09000 * 109.47258 * 299.99987 * 1 2 3 26 26 H 1.08995 * 109.46978 * 59.99875 * 1 2 3 27 27 H 1.08998 * 109.47100 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47258 * 240.00013 * 2 1 3 29 29 H 1.09003 * 109.47127 * 119.99499 * 2 1 3 30 30 H 1.08999 * 109.47031 * 66.52701 * 3 2 1 31 31 H 1.09004 * 109.47090 * 306.53028 * 3 2 1 32 32 H 1.09004 * 109.47330 * 206.52084 * 5 4 3 33 33 H 1.09000 * 109.47435 * 326.51940 * 5 4 3 34 34 H 1.08994 * 109.47555 * 296.22309 * 6 5 4 35 35 H 1.08998 * 109.47328 * 56.22585 * 6 5 4 36 36 H 1.09004 * 109.46957 * 300.00492 * 7 6 5 37 37 H 1.08998 * 109.47456 * 59.99803 * 7 6 5 38 38 H 0.97005 * 119.99438 * 180.02562 * 12 11 9 39 39 H 1.08994 * 109.64912 * 46.62215 * 19 17 4 40 40 H 1.09001 * 109.64633 * 286.19158 * 19 17 4 41 41 H 1.08998 * 110.32041 * 91.05588 * 20 19 17 42 42 H 1.08995 * 110.31744 * 213.25371 * 20 19 17 43 43 H 1.09000 * 110.80739 * 79.97381 * 24 17 4 44 44 H 1.08999 * 110.81829 * 316.47236 * 24 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5006 1.4455 -0.1575 5 6 4.1506 0.7268 0.9464 6 6 4.2192 -0.7649 0.6134 7 6 4.9794 -1.4999 1.7192 8 16 5.0614 -3.2646 1.3249 9 6 5.9612 -3.8489 2.7225 10 1 6.2786 -3.1568 3.4883 11 6 6.2631 -5.1988 2.8386 12 7 6.9358 -5.6352 3.8825 13 14 5.7147 -6.3958 1.5136 14 1 6.7713 -6.5034 0.4757 15 1 5.4785 -7.7308 2.1196 16 1 4.4585 -5.9050 0.8922 17 6 4.0153 2.8169 -0.2682 18 1 5.1052 2.8071 -0.2811 19 6 3.4791 3.4792 -1.5496 20 6 3.7456 4.9955 -1.4677 21 16 3.7602 5.3805 0.3204 22 8 5.0569 5.8240 0.6960 23 8 2.6204 6.1656 0.6424 24 6 3.5068 3.6672 0.9204 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.7752 1.9215 0.9426 31 1 1.5844 1.9890 -0.8258 32 1 5.1595 1.1143 1.0882 33 1 3.5751 0.8687 1.8612 34 1 3.2091 -1.1673 0.5378 35 1 4.7369 -0.9018 -0.3360 36 1 5.9897 -1.0976 1.7948 37 1 4.4619 -1.3631 2.6687 38 1 7.1471 -6.5785 3.9635 39 1 2.4074 3.2995 -1.6341 40 1 3.9900 3.0637 -2.4182 41 1 4.7107 5.2348 -1.9143 42 1 2.9493 5.5472 -1.9672 43 1 4.1016 3.4783 1.8141 44 1 2.4505 3.4758 1.1097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080722620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:06 Heat of formation + Delta-G solvation = -73.131717 kcal Electronic energy + Delta-G solvation = -23214.938015 eV Core-core repulsion = 19806.754742 eV Total energy + Delta-G solvation = -3408.183273 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -39.65477 -37.41762 -36.41136 -35.66602 -33.51191 -32.45374 -32.16734 -29.55530 -26.81837 -26.20200 -25.64243 -24.02408 -21.99072 -20.95330 -20.24780 -19.22147 -17.48831 -17.19768 -17.19060 -16.45299 -15.91126 -15.54778 -15.17485 -15.00601 -14.92471 -14.50120 -14.26082 -13.82220 -13.49692 -13.25615 -13.07134 -12.91160 -12.84086 -12.54056 -12.41323 -12.27014 -12.19563 -12.04024 -11.84916 -11.53725 -11.34429 -11.20095 -11.16804 -11.05021 -10.94135 -10.84351 -10.67449 -10.18933 -9.99856 -9.80646 -9.01971 -8.65479 -8.57267 -6.95625 -6.29839 -4.02048 -0.38086 2.11332 2.96451 3.13372 3.28689 3.38329 3.43748 3.56060 3.63454 4.03899 4.15112 4.19680 4.30103 4.30906 4.46382 4.68441 4.78443 4.84839 4.91606 5.04748 5.08965 5.11620 5.16123 5.21801 5.28016 5.32228 5.42379 5.49156 5.56972 5.60765 5.62139 5.75275 5.87997 5.94314 6.02040 6.13353 6.28076 6.43551 6.62788 6.76399 6.82345 7.93986 8.42907 9.16118 10.79745 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.002669 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.380563 B =10489.246807 C =11257.151952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C 0.044 3.956 4 N -0.516 5.516 5 C 0.056 3.944 6 C -0.111 4.111 7 C -0.084 4.084 8 S -0.214 6.214 9 C -0.502 4.502 10 H 0.087 0.913 11 C 0.091 3.909 12 N -0.882 5.882 13 Si 0.862 3.138 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.238 1.238 17 C 0.088 3.912 18 H 0.110 0.890 19 C -0.110 4.110 20 C -0.591 4.591 21 S 2.390 3.610 22 O -0.936 6.936 23 O -0.941 6.941 24 C -0.635 4.635 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.270 0.730 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.051 20.269 -11.967 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.171 4.171 3 C -0.084 4.084 4 N -0.238 5.238 5 C -0.072 4.072 6 C -0.149 4.149 7 C -0.233 4.233 8 S 0.014 5.986 9 C -0.650 4.650 10 H 0.105 0.895 11 C -0.117 4.117 12 N -0.519 5.519 13 Si 0.687 3.313 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.162 1.162 17 C -0.023 4.023 18 H 0.128 0.872 19 C -0.149 4.149 20 C -0.721 4.721 21 S 2.573 3.427 22 O -0.933 6.933 23 O -0.938 6.938 24 C -0.766 4.766 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.148 20.148 -12.699 26.296 hybrid contribution 0.218 -0.337 1.104 1.174 sum -10.930 19.810 -11.595 25.424 Atomic orbital electron populations 1.21760 0.95747 1.02091 1.01374 1.21913 0.95339 0.95913 1.03907 1.22441 0.87263 0.98240 1.00425 1.62060 1.05229 1.11503 1.45007 1.22262 0.98818 0.95008 0.91159 1.21762 1.02238 0.92138 0.98789 1.23034 1.02069 0.97771 1.00406 1.84140 1.75305 1.02959 1.36191 1.22128 1.39611 0.96959 1.06298 0.89493 1.24807 0.93733 0.97542 0.95631 1.69944 1.37882 1.15800 1.28296 0.86662 0.81521 0.80936 0.82167 1.19372 1.20152 1.16157 1.22529 1.01107 0.88704 0.89957 0.87247 1.21996 1.03975 0.89483 0.99410 1.30486 1.11864 1.05335 1.24389 1.09021 0.75377 0.78419 0.79929 1.93636 1.39164 1.79318 1.81183 1.93615 1.51391 1.66413 1.82391 1.31345 1.12159 1.23414 1.09680 0.92995 0.92933 0.92231 0.90496 0.90254 0.94137 0.90427 0.90912 0.93690 0.89738 0.90754 0.91623 0.91714 0.91980 0.89306 0.87980 0.84301 0.84295 0.84087 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.13 -1.24 4.38 -26.73 -0.12 -1.35 16 3 C 0.04 0.35 4.04 -3.82 -0.02 0.33 16 4 N -0.52 -4.53 4.47 -225.00 -1.01 -5.54 16 5 C 0.06 0.61 4.28 -3.83 -0.02 0.60 16 6 C -0.11 -1.55 4.96 -26.73 -0.13 -1.68 16 7 C -0.08 -1.54 5.67 37.16 0.21 -1.33 16 8 S -0.21 -5.08 19.41 -107.50 -2.09 -7.16 16 9 C -0.50 -14.42 10.04 30.94 0.31 -14.11 16 10 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 11 C 0.09 2.64 5.50 -17.43 -0.10 2.55 16 12 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 13 Si 0.86 21.35 27.74 -169.99 -4.71 16.63 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 17 C 0.09 0.59 2.54 -66.34 -0.17 0.43 16 18 H 0.11 0.69 7.82 -51.93 -0.41 0.29 16 19 C -0.11 -0.54 5.86 -25.66 -0.15 -0.69 16 20 C -0.59 -2.46 7.26 37.77 0.27 -2.19 16 21 S 2.39 17.14 6.10 -107.50 -0.66 16.49 16 22 O -0.94 -10.34 18.15 -57.71 -1.05 -11.38 16 23 O -0.94 -10.10 18.15 -57.71 -1.05 -11.15 16 24 C -0.63 -4.00 6.05 38.07 0.23 -3.77 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 29 H 0.08 0.86 5.60 -51.93 -0.29 0.57 16 30 H 0.04 0.31 6.07 -51.93 -0.32 -0.01 16 31 H 0.08 0.50 6.05 -51.93 -0.31 0.18 16 32 H 0.07 0.77 7.57 -51.93 -0.39 0.37 16 33 H 0.04 0.48 7.77 -51.93 -0.40 0.08 16 34 H 0.08 1.17 4.30 -51.93 -0.22 0.94 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.22 8.14 -51.91 -0.42 0.80 16 37 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.09 0.37 6.00 -51.93 -0.31 0.06 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.14 0.80 5.75 -51.93 -0.30 0.51 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -36.05 362.02 -10.80 -46.85 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.17 Total: -2.23 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 0.70 Total: -22.06 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: -0.23 Total: -31.44 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -2.09 Total: -22.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.63 kcal Atomic # 16 Polarization: 12.06 SS G_CDS: -2.74 Total: 9.32 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.05 -10.80 -46.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080722620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.278 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds