Wall clock time and date at job start Tue Mar 31 2020 14:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47132 * 2 1 4 4 N 1.46901 * 109.47064 * 186.53174 * 3 2 1 5 5 C 1.46896 * 110.99931 * 299.48593 * 4 3 2 6 6 C 1.52998 * 109.46997 * 86.51839 * 5 4 3 7 7 C 1.53001 * 109.47259 * 176.22303 * 6 5 4 8 8 S 1.81002 * 109.47399 * 180.02562 * 7 6 5 9 9 C 1.76201 * 99.99901 * 180.02562 * 8 7 6 10 10 H 1.07993 * 119.99914 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99581 * 180.02562 * 9 8 7 12 12 N 1.31635 * 119.99429 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00126 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47185 * 90.00281 * 13 11 9 15 15 H 1.48496 * 109.47240 * 210.00120 * 13 11 9 16 16 H 1.48502 * 109.47313 * 330.00232 * 13 11 9 17 17 C 1.46901 * 110.99883 * 175.53632 * 4 3 2 18 18 H 1.09001 * 110.05065 * 174.19699 * 17 4 3 19 19 C 1.53881 * 110.02364 * 295.59662 * 17 4 3 20 20 C 1.54169 * 108.59353 * 166.40836 * 19 17 4 21 21 S 1.82919 * 105.08616 * 332.15658 * 20 19 17 22 22 O 1.42098 * 109.35327 * 115.52268 * 21 20 19 23 23 O 1.42101 * 109.35494 * 248.72600 * 21 20 19 24 24 C 1.54739 * 109.87485 * 52.88153 * 17 4 3 25 25 H 1.09000 * 109.47258 * 299.99987 * 1 2 3 26 26 H 1.08995 * 109.46978 * 59.99875 * 1 2 3 27 27 H 1.08998 * 109.47100 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47258 * 240.00013 * 2 1 3 29 29 H 1.09003 * 109.47127 * 119.99499 * 2 1 3 30 30 H 1.08999 * 109.47031 * 66.52701 * 3 2 1 31 31 H 1.09004 * 109.47090 * 306.53028 * 3 2 1 32 32 H 1.09004 * 109.47330 * 206.52084 * 5 4 3 33 33 H 1.09000 * 109.47435 * 326.51940 * 5 4 3 34 34 H 1.08994 * 109.47555 * 296.22309 * 6 5 4 35 35 H 1.08998 * 109.47328 * 56.22585 * 6 5 4 36 36 H 1.09004 * 109.46957 * 300.00492 * 7 6 5 37 37 H 1.08998 * 109.47456 * 59.99803 * 7 6 5 38 38 H 0.97005 * 119.99438 * 180.02562 * 12 11 9 39 39 H 1.08994 * 109.64912 * 46.62215 * 19 17 4 40 40 H 1.09001 * 109.64633 * 286.19158 * 19 17 4 41 41 H 1.08998 * 110.32041 * 91.05588 * 20 19 17 42 42 H 1.08995 * 110.31744 * 213.25371 * 20 19 17 43 43 H 1.09000 * 110.80739 * 79.97381 * 24 17 4 44 44 H 1.08999 * 110.81829 * 316.47236 * 24 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5006 1.4455 -0.1575 5 6 4.1506 0.7268 0.9464 6 6 4.2192 -0.7649 0.6134 7 6 4.9794 -1.4999 1.7192 8 16 5.0614 -3.2646 1.3249 9 6 5.9612 -3.8489 2.7225 10 1 6.2786 -3.1568 3.4883 11 6 6.2631 -5.1988 2.8386 12 7 6.9358 -5.6352 3.8825 13 14 5.7147 -6.3958 1.5136 14 1 6.7713 -6.5034 0.4757 15 1 5.4785 -7.7308 2.1196 16 1 4.4585 -5.9050 0.8922 17 6 4.0153 2.8169 -0.2682 18 1 5.1052 2.8071 -0.2811 19 6 3.4791 3.4792 -1.5496 20 6 3.7456 4.9955 -1.4677 21 16 3.7602 5.3805 0.3204 22 8 5.0569 5.8240 0.6960 23 8 2.6204 6.1656 0.6424 24 6 3.5068 3.6672 0.9204 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 1.7752 1.9215 0.9426 31 1 1.5844 1.9890 -0.8258 32 1 5.1595 1.1143 1.0882 33 1 3.5751 0.8687 1.8612 34 1 3.2091 -1.1673 0.5378 35 1 4.7369 -0.9018 -0.3360 36 1 5.9897 -1.0976 1.7948 37 1 4.4619 -1.3631 2.6687 38 1 7.1471 -6.5785 3.9635 39 1 2.4074 3.2995 -1.6341 40 1 3.9900 3.0637 -2.4182 41 1 4.7107 5.2348 -1.9143 42 1 2.9493 5.5472 -1.9672 43 1 4.1016 3.4783 1.8141 44 1 2.4505 3.4758 1.1097 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080722620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:05 Heat of formation + Delta-G solvation = -99.963340 kcal Electronic energy + Delta-G solvation = -23216.101522 eV Core-core repulsion = 19806.754742 eV Total energy + Delta-G solvation = -3409.346780 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 321.122 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.30478 -38.10928 -37.10335 -36.34145 -34.68528 -34.41894 -32.92908 -30.12301 -28.07496 -27.54001 -26.77360 -24.80933 -22.61033 -22.04168 -20.87238 -19.81280 -19.55786 -17.80796 -17.75861 -17.20858 -17.09941 -16.61013 -16.45361 -15.86846 -15.76473 -15.40785 -15.24340 -14.93852 -14.66087 -14.39874 -14.04888 -13.70435 -13.46819 -13.36104 -13.30194 -13.21324 -13.12825 -13.08684 -12.94582 -12.88920 -12.55286 -12.32351 -12.06968 -11.98948 -11.76689 -11.73163 -11.61200 -11.41478 -11.23945 -11.16209 -10.94559 -10.53942 -9.34279 -8.97239 -8.51862 -6.22385 -0.91817 1.13863 1.32570 1.48181 1.61118 1.76793 2.25145 2.57672 2.69944 2.82085 2.86425 3.03243 3.50059 3.66340 3.75696 3.89402 4.00628 4.03263 4.11002 4.18273 4.28584 4.39784 4.45354 4.51373 4.58148 4.60632 4.75072 4.77477 4.82028 4.87668 4.88541 4.92108 5.08987 5.16722 5.23867 5.26383 5.34096 5.44908 5.53892 5.69670 6.01782 6.10085 6.10318 6.92446 8.61447 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.002669 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.380563 B =10489.246807 C =11257.151952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.040 3.960 4 N -0.517 5.517 5 C 0.063 3.937 6 C -0.099 4.099 7 C -0.071 4.071 8 S -0.217 6.217 9 C -0.522 4.522 10 H 0.048 0.952 11 C 0.036 3.964 12 N -0.925 5.925 13 Si 0.927 3.073 14 H -0.261 1.261 15 H -0.264 1.264 16 H -0.227 1.227 17 C 0.081 3.919 18 H 0.114 0.886 19 C -0.109 4.109 20 C -0.561 4.561 21 S 2.390 3.610 22 O -0.983 6.983 23 O -0.983 6.983 24 C -0.628 4.628 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.276 0.724 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.140 0.860 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 20.891 -14.753 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C -0.087 4.087 4 N -0.240 5.240 5 C -0.067 4.067 6 C -0.137 4.137 7 C -0.220 4.220 8 S 0.011 5.989 9 C -0.670 4.670 10 H 0.066 0.934 11 C -0.169 4.169 12 N -0.563 5.563 13 Si 0.748 3.252 14 H -0.186 1.186 15 H -0.189 1.189 16 H -0.150 1.150 17 C -0.030 4.030 18 H 0.131 0.869 19 C -0.147 4.147 20 C -0.695 4.695 21 S 2.579 3.421 22 O -0.980 6.980 23 O -0.980 6.980 24 C -0.760 4.760 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.174 0.826 42 H 0.180 0.820 43 H 0.158 0.842 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.643 20.807 -15.452 28.836 hybrid contribution 0.685 -0.455 1.986 2.149 sum -11.958 20.352 -13.466 27.176 Atomic orbital electron populations 1.21737 0.94801 1.01927 1.02282 1.21857 0.96224 0.96584 1.02393 1.22533 0.86741 0.97604 1.01779 1.61975 1.05659 1.12595 1.43734 1.22076 0.99548 0.93018 0.92060 1.21687 1.01494 0.93929 0.96638 1.23120 1.02661 0.94182 1.02087 1.83805 1.74144 1.07246 1.33704 1.22367 1.40275 0.96906 1.07457 0.93408 1.25818 0.93646 0.99432 0.97972 1.70051 1.39194 1.16663 1.30386 0.85690 0.81587 0.78680 0.79236 1.18602 1.18897 1.15007 1.22691 1.01588 0.87634 0.91039 0.86853 1.22048 1.04893 0.89295 0.98484 1.30306 1.13848 1.05180 1.20130 1.08751 0.73537 0.78304 0.81546 1.93573 1.40882 1.80589 1.82952 1.93557 1.52291 1.68108 1.83997 1.31273 1.12786 1.22159 1.09767 0.92637 0.91455 0.92994 0.91387 0.92308 0.93559 0.88076 0.90553 0.93512 0.89313 0.91027 0.92030 0.92061 0.91443 0.88008 0.86801 0.82586 0.82038 0.84151 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.13 -2.20 4.38 30.60 0.13 -2.07 16 3 C 0.04 0.52 4.04 86.30 0.35 0.87 16 4 N -0.52 -7.68 4.47 -865.77 -3.87 -11.55 16 5 C 0.06 1.25 4.28 86.30 0.37 1.62 16 6 C -0.10 -2.63 4.96 30.59 0.15 -2.48 16 7 C -0.07 -2.62 5.67 71.98 0.41 -2.21 16 8 S -0.22 -10.25 19.41 -56.49 -1.10 -11.34 16 9 C -0.52 -30.77 10.04 67.96 0.68 -30.09 16 10 H 0.05 3.07 8.03 -2.91 -0.02 3.05 16 11 C 0.04 2.10 5.50 84.86 0.47 2.57 16 12 N -0.92 -57.16 13.97 21.65 0.30 -56.85 16 13 Si 0.93 43.91 27.74 68.60 1.90 45.81 16 14 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 15 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.23 -10.26 6.74 99.48 0.67 -9.59 16 17 C 0.08 0.86 2.54 45.81 0.12 0.98 16 18 H 0.11 1.14 7.82 -2.39 -0.02 1.13 16 19 C -0.11 -0.61 5.86 31.29 0.18 -0.43 16 20 C -0.56 -2.67 7.26 72.38 0.53 -2.14 16 21 S 2.39 31.48 6.10 -56.49 -0.34 31.13 16 22 O -0.98 -21.61 18.15 -127.49 -2.31 -23.93 16 23 O -0.98 -20.51 18.15 -127.49 -2.31 -22.82 16 24 C -0.63 -6.73 6.05 72.58 0.44 -6.29 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 1.24 7.90 -2.39 -0.02 1.22 16 29 H 0.06 1.21 5.60 -2.39 -0.01 1.19 16 30 H 0.05 0.57 6.07 -2.39 -0.01 0.55 16 31 H 0.10 0.87 6.05 -2.38 -0.01 0.85 16 32 H 0.08 1.48 7.57 -2.39 -0.02 1.46 16 33 H 0.05 0.93 7.77 -2.39 -0.02 0.91 16 34 H 0.09 2.34 4.30 -2.39 -0.01 2.33 16 35 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 2.28 8.14 -2.40 -0.02 2.26 16 38 H 0.28 15.72 8.31 -92.70 -0.77 14.95 16 39 H 0.10 0.36 6.00 -2.39 -0.01 0.35 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.16 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.15 1.36 5.75 -2.39 -0.01 1.34 16 Total: -1.00 -79.83 362.02 -2.26 -82.08 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.94 Total: 8.51 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 4.54 Total: -41.04 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: -3.57 Total: -68.40 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -4.63 Total: -46.75 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.90 Total: 45.81 kcal Atomic # 16 Polarization: 21.23 SS G_CDS: -1.44 Total: 19.79 kcal Total: -79.83 -2.26 -82.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080722620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.882 kcal (2) G-P(sol) polarization free energy of solvation -79.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds