Wall clock time and date at job start Tue Mar 31 2020 13:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39587 * 120.10594 * 255.42201 * 3 2 1 5 5 C 1.38001 * 119.99687 * 180.02562 * 4 3 2 6 6 C 1.38241 * 120.21568 * 359.97438 * 5 4 3 7 7 C 1.38945 * 120.21727 * 359.97438 * 6 5 4 8 8 N 1.39943 * 119.99941 * 179.97438 * 7 6 5 9 9 C 1.34782 * 119.99966 * 144.90265 * 8 7 6 10 10 O 1.21283 * 119.99995 * 4.50883 * 9 8 7 11 11 C 1.50702 * 119.99762 * 184.51261 * 9 8 7 12 12 C 1.50702 * 109.46697 * 179.97438 * 11 9 8 13 13 C 1.38320 * 119.96383 * 269.71956 * 12 11 9 14 14 C 1.38279 * 120.13580 * 179.76920 * 13 12 11 15 15 C 1.38120 * 120.07182 * 0.51027 * 14 13 12 16 16 C 1.38854 * 119.92690 * 359.75116 * 15 14 13 17 17 O 1.35758 * 120.06690 * 179.97438 * 16 15 14 18 18 C 1.34828 * 116.99967 * 5.34978 * 17 16 15 19 19 H 1.07995 * 119.99756 * 354.96875 * 18 17 16 20 20 C 1.38653 * 119.99830 * 174.96889 * 18 17 16 21 21 N 1.31552 * 119.99916 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99892 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47095 * 90.00188 * 22 20 18 24 24 H 1.48505 * 109.46882 * 210.00094 * 22 20 18 25 25 H 1.48491 * 109.47507 * 330.00114 * 22 20 18 26 26 C 1.38072 * 119.96529 * 90.00184 * 12 11 9 27 27 C 1.38647 * 119.99848 * 0.02562 * 7 6 5 28 28 H 4.52048 * 14.03046 * 359.97438 * 4 2 1 29 29 H 1.07997 * 120.00283 * 0.04187 * 4 3 2 30 30 H 1.07995 * 119.88974 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.89194 * 179.97438 * 6 5 4 32 32 H 0.96998 * 119.99911 * 324.89634 * 8 7 6 33 33 H 1.09002 * 109.46932 * 299.99232 * 11 9 8 34 34 H 1.08996 * 109.47414 * 59.99923 * 11 9 8 35 35 H 1.07996 * 119.93148 * 0.02562 * 13 12 11 36 36 H 1.08007 * 119.96556 * 180.25574 * 14 13 12 37 37 H 1.07999 * 120.03628 * 179.76647 * 15 14 13 38 38 H 0.97006 * 120.00000 * 180.02562 * 21 20 18 39 39 H 1.07999 * 120.04099 * 359.95028 * 26 12 11 40 40 H 1.08000 * 120.10304 * 179.73188 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3060 0.3049 1.1687 5 6 4.6861 0.3054 1.1660 6 6 5.3796 0.0047 0.0086 7 6 4.6918 -0.3005 -1.1595 8 7 5.3985 -0.6037 -2.3287 9 6 4.9156 -1.5220 -3.1890 10 8 3.8301 -2.0258 -2.9921 11 6 5.7246 -1.9227 -4.3957 12 6 4.9663 -2.9564 -5.1880 13 6 5.1434 -4.3012 -4.9171 14 6 4.4459 -5.2524 -5.6387 15 6 3.5778 -4.8626 -6.6397 16 6 3.4019 -3.5136 -6.9177 17 8 2.5497 -3.1273 -7.9013 18 6 1.8221 -4.0944 -8.4956 19 1 1.9903 -5.1303 -8.2407 20 6 0.8580 -3.7589 -9.4338 21 7 0.1477 -4.7025 -10.0133 22 14 0.5666 -1.9670 -9.8740 23 1 1.4466 -1.5865 -11.0080 24 1 -0.8537 -1.7779 -10.2644 25 1 0.8752 -1.1123 -8.6996 26 6 4.1000 -2.5602 -6.1875 27 6 3.3054 -0.3036 -1.1669 28 1 -1.0500 0.0004 -0.0004 29 1 2.7677 0.5397 2.0750 30 1 5.2259 0.5414 2.0711 31 1 6.4596 0.0070 0.0123 32 1 6.2359 -0.1530 -2.5199 33 1 5.9052 -1.0471 -5.0192 34 1 6.6776 -2.3410 -4.0717 35 1 5.8247 -4.6087 -4.1376 36 1 4.5832 -6.3016 -5.4220 37 1 3.0361 -5.6062 -7.2054 38 1 -0.5266 -4.4678 -10.6700 39 1 3.9649 -1.5102 -6.4011 40 1 2.7691 -0.5364 -2.0750 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089658466.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:01 Heat of formation + Delta-G solvation = 26.310069 kcal Electronic energy + Delta-G solvation = -24645.959996 eV Core-core repulsion = 20971.200940 eV Total energy + Delta-G solvation = -3674.759056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.115 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.69698 -40.84432 -39.66660 -38.31077 -36.12216 -34.50953 -34.41958 -33.61734 -31.39703 -31.14515 -30.62932 -28.34088 -27.19086 -24.57010 -24.12001 -23.30978 -22.48709 -21.34700 -20.25230 -19.66699 -18.90234 -18.16496 -17.71224 -17.22217 -16.89372 -16.85639 -16.32184 -15.91082 -15.73811 -15.63226 -15.48919 -15.07064 -14.80052 -14.50566 -14.41114 -14.23823 -14.13081 -13.94846 -13.07170 -12.93474 -12.89171 -12.64254 -12.58619 -12.42576 -12.38908 -12.28764 -11.95624 -11.61057 -11.33871 -11.24258 -10.95644 -10.86990 -9.70406 -9.64882 -9.15105 -9.08263 -8.52566 -6.25401 -0.08776 0.30106 0.45811 0.67888 1.27229 1.32509 1.48258 1.54503 1.68858 1.99902 2.11471 2.25405 2.75560 2.98960 2.99887 3.14831 3.32231 3.69555 3.96587 4.02849 4.05933 4.18958 4.22628 4.27898 4.41020 4.50423 4.52679 4.59031 4.63199 4.68514 4.72695 4.94976 5.14630 5.22179 5.28913 5.32854 5.37035 5.48115 5.51721 5.62288 5.70079 5.74421 5.89473 5.99638 6.22555 6.44483 6.51304 6.81729 7.17584 7.56554 8.59418 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.002974 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.003506 B = 9411.934689 C =10652.612299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.200 4.200 3 C -0.001 4.001 4 C -0.117 4.117 5 C -0.092 4.092 6 C -0.124 4.124 7 C 0.137 3.863 8 N -0.659 5.659 9 C 0.511 3.489 10 O -0.558 6.558 11 C -0.085 4.085 12 C -0.031 4.031 13 C -0.169 4.169 14 C -0.079 4.079 15 C -0.240 4.240 16 C 0.118 3.882 17 O -0.247 6.247 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.009 3.991 21 N -0.924 5.924 22 Si 0.971 3.029 23 H -0.260 1.260 24 H -0.266 1.266 25 H -0.268 1.268 26 C -0.181 4.181 27 C -0.130 4.130 28 H 0.258 0.742 29 H 0.142 0.858 30 H 0.171 0.829 31 H 0.169 0.831 32 H 0.434 0.566 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.285 0.715 39 H 0.122 0.878 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.086 13.177 23.222 31.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.200 4.200 3 C -0.002 4.002 4 C -0.136 4.136 5 C -0.110 4.110 6 C -0.144 4.144 7 C 0.042 3.958 8 N -0.307 5.307 9 C 0.300 3.700 10 O -0.434 6.434 11 C -0.124 4.124 12 C -0.031 4.031 13 C -0.188 4.188 14 C -0.097 4.097 15 C -0.260 4.260 16 C 0.069 3.931 17 O -0.155 6.155 18 C -0.476 4.476 19 H 0.097 0.903 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.793 3.207 23 H -0.185 1.185 24 H -0.191 1.191 25 H -0.193 1.193 26 C -0.200 4.200 27 C -0.150 4.150 28 H 0.274 0.726 29 H 0.160 0.840 30 H 0.188 0.812 31 H 0.187 0.813 32 H 0.274 0.726 33 H 0.152 0.848 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.158 0.842 37 H 0.124 0.876 38 H 0.095 0.905 39 H 0.140 0.860 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.166 12.945 23.050 30.477 hybrid contribution -1.005 -0.028 -1.037 1.445 sum 14.161 12.918 22.012 29.188 Atomic orbital electron populations 1.25817 0.96724 0.97707 0.97600 1.20699 0.93234 1.03018 1.03017 1.16104 0.86948 1.02305 0.94843 1.21455 0.95391 1.00115 0.96609 1.21333 0.92885 0.97699 0.99105 1.21429 1.01889 1.01179 0.89900 1.17774 0.90172 0.99883 0.87949 1.43376 1.26702 1.40843 1.19770 1.21321 0.86374 0.77923 0.84398 1.90797 1.23018 1.54892 1.74697 1.20714 0.99101 0.99869 0.92677 1.19211 0.95364 0.94739 0.93802 1.21032 1.03575 0.91893 1.02262 1.21122 0.94241 1.00656 0.93672 1.21330 1.05406 0.95331 1.03909 1.19606 0.90958 0.93918 0.88620 1.83503 1.49869 1.36589 1.45544 1.20715 1.16838 0.88266 1.21824 0.90303 1.25283 0.94157 1.04038 0.95388 1.69730 1.23662 1.34792 1.28326 0.85218 0.78158 0.78183 0.79147 1.18460 1.19106 1.19270 1.20294 1.01915 0.97989 0.99788 1.21253 0.94304 1.01362 0.98091 0.72604 0.84030 0.81173 0.81337 0.72553 0.84762 0.82990 0.83225 0.84240 0.87590 0.90538 0.85998 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 19.25 74.32 1.43 -2.25 16 2 C -0.20 -5.51 13.24 30.02 0.40 -5.11 16 3 C 0.00 -0.04 5.72 -21.43 -0.12 -0.16 16 4 C -0.12 -2.12 9.75 22.54 0.22 -1.90 16 5 C -0.09 -1.12 10.02 22.21 0.22 -0.90 16 6 C -0.12 -1.57 9.96 22.44 0.22 -1.35 16 7 C 0.14 2.78 6.29 38.11 0.24 3.02 16 8 N -0.66 -10.67 5.34 -303.60 -1.62 -12.29 16 9 C 0.51 12.29 7.66 87.66 0.67 12.96 16 10 O -0.56 -20.46 13.48 -3.04 -0.04 -20.50 16 11 C -0.08 -1.57 5.83 29.10 0.17 -1.40 16 12 C -0.03 -0.96 4.37 -19.88 -0.09 -1.05 16 13 C -0.17 -5.26 9.70 22.30 0.22 -5.05 16 14 C -0.08 -2.90 10.04 22.25 0.22 -2.68 16 15 C -0.24 -11.32 9.17 22.39 0.21 -11.11 16 16 C 0.12 5.88 6.65 22.58 0.15 6.03 16 17 O -0.25 -14.21 8.59 -22.81 -0.20 -14.40 16 18 C -0.40 -24.75 9.95 67.92 0.68 -24.08 16 19 H 0.08 5.11 5.43 -2.91 -0.02 5.10 16 20 C 0.01 0.57 5.49 84.83 0.47 1.04 16 21 N -0.92 -57.09 13.96 21.61 0.30 -56.79 16 22 Si 0.97 47.33 28.62 68.60 1.96 49.29 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 26 C -0.18 -7.34 9.65 22.39 0.22 -7.12 16 27 C -0.13 -3.70 8.39 22.65 0.19 -3.51 16 28 H 0.26 3.44 7.80 -4.42 -0.03 3.41 16 29 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 30 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 31 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 32 H 0.43 2.71 8.82 -92.71 -0.82 1.89 16 33 H 0.13 1.77 8.08 -2.39 -0.02 1.75 16 34 H 0.15 1.45 8.08 -2.39 -0.02 1.43 16 35 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.11 5.45 5.64 -2.91 -0.02 5.44 16 38 H 0.28 16.09 8.31 -92.70 -0.77 15.32 16 39 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.10 3.79 6.24 -2.91 -0.02 3.77 16 Total: -1.00 -87.16 359.18 6.38 -80.78 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.27 Total: 18.52 kcal Atomic # 6 Polarization: -50.32 SS G_CDS: 5.71 Total: -44.61 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.32 Total: -69.07 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.24 Total: -34.90 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.96 Total: 49.29 kcal Total: -87.16 6.38 -80.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089658466.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.088 kcal (2) G-P(sol) polarization free energy of solvation -87.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds