Wall clock time and date at job start Tue Mar 31 2020 13:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00548 * 2 1 4 4 C 1.50705 * 119.99417 * 179.97438 * 2 1 3 5 5 O 1.42898 * 109.47092 * 0.02562 * 4 2 1 6 6 C 1.42898 * 113.99686 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47171 * 179.97438 * 6 5 4 8 8 N 1.46492 * 109.47018 * 64.99880 * 7 6 5 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 6 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47865 * 120.00304 * 179.97438 * 9 8 7 12 12 C 1.39665 * 120.09843 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.03832 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67600 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47076 * 59.99906 * 21 19 17 23 23 H 1.48496 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46962 * 299.99839 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 H 1.08007 * 119.99255 * 0.02562 * 1 2 3 27 27 H 1.07991 * 120.00671 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47182 * 239.99204 * 3 2 1 29 29 H 1.08996 * 109.47087 * 359.97438 * 3 2 1 30 30 H 1.09007 * 109.47104 * 119.99817 * 3 2 1 31 31 H 1.09005 * 109.47251 * 240.00160 * 4 2 1 32 32 H 1.09003 * 109.46783 * 120.00423 * 4 2 1 33 33 H 1.09005 * 109.47443 * 59.99954 * 6 5 4 34 34 H 1.09004 * 109.47804 * 299.99585 * 6 5 4 35 35 H 1.09005 * 109.46655 * 304.99889 * 7 6 5 36 36 H 1.09002 * 109.47164 * 184.99820 * 7 6 5 37 37 H 0.96996 * 120.00373 * 359.97438 * 8 7 6 38 38 H 1.08002 * 119.98607 * 0.02562 * 12 11 9 39 39 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 40 40 H 1.08004 * 119.89897 * 180.29644 * 14 13 12 41 41 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 42 42 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 8 1.1346 -2.3913 0.0005 6 6 1.7491 -3.6814 0.0016 7 6 0.6661 -4.7621 0.0020 8 7 -0.0915 -4.6947 -1.2500 9 6 -1.1033 -5.5569 -1.4728 10 8 -1.3868 -6.3906 -0.6350 11 6 -1.8683 -5.4885 -2.7363 12 6 -1.5446 -4.5310 -3.7002 13 6 -2.2600 -4.4679 -4.8791 14 6 -3.2936 -5.3543 -5.1141 15 6 -3.6285 -6.3088 -4.1582 16 16 -4.9526 -7.4314 -4.4595 17 6 -6.2684 -6.5742 -3.6606 18 1 -6.1010 -5.5891 -3.2508 19 6 -7.5196 -7.1647 -3.5579 20 7 -7.7239 -8.3650 -4.0578 21 14 -8.9148 -6.2555 -2.7115 22 1 -9.1777 -4.9791 -3.4234 23 1 -10.1386 -7.0962 -2.7333 24 1 -8.5369 -5.9686 -1.3043 25 6 -2.9147 -6.3794 -2.9690 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5401 -0.9352 -0.0004 28 1 2.6904 1.3626 -0.8899 29 1 1.3554 2.1335 -0.0005 30 1 2.6902 1.3627 0.8901 31 1 2.6900 -1.3627 0.8906 32 1 2.6901 -1.3633 -0.8894 33 1 2.3687 -3.7881 0.8921 34 1 2.3699 -3.7891 -0.8879 35 1 -0.0077 -4.6009 0.8435 36 1 1.1320 -5.7434 0.0924 37 1 0.1345 -4.0292 -1.9185 38 1 -0.7341 -3.8395 -3.5231 39 1 -2.0077 -3.7262 -5.6225 40 1 -3.8466 -5.3031 -6.0405 41 1 -8.5986 -8.7780 -3.9856 42 1 -3.1696 -7.1216 -2.2271 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136192671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:41 Heat of formation + Delta-G solvation = -69.237930 kcal Electronic energy + Delta-G solvation = -23210.030063 eV Core-core repulsion = 19666.571686 eV Total energy + Delta-G solvation = -3543.458377 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.23806 -39.51973 -39.02466 -36.51184 -35.33480 -34.65986 -32.57438 -31.93176 -30.26719 -28.00661 -27.74791 -27.13664 -25.15792 -23.84505 -23.07637 -21.70975 -20.04202 -19.53172 -19.00821 -17.78232 -17.56724 -17.06009 -16.93806 -16.68110 -16.56095 -16.17300 -16.12225 -15.63367 -15.18830 -14.74634 -14.65630 -14.57597 -14.17051 -13.93551 -13.75558 -13.62880 -13.23563 -13.11799 -13.01464 -12.96906 -12.66475 -12.58680 -12.39232 -12.07390 -11.94414 -11.76429 -11.26618 -11.16462 -10.79600 -10.72194 -10.29367 -9.90191 -9.86743 -9.70345 -8.81000 -8.39693 -6.19735 -0.18759 0.24905 1.28720 1.33755 1.38207 1.44077 1.64156 1.78492 2.08166 2.24189 2.58308 2.80101 2.93127 3.41131 3.66175 3.82281 3.93900 4.00433 4.05944 4.17596 4.26979 4.35652 4.43709 4.46563 4.49262 4.55271 4.60291 4.66397 4.73054 4.84688 4.88549 4.92062 5.13194 5.17123 5.21792 5.30419 5.33890 5.37635 5.49942 5.70903 5.85477 5.86039 6.14936 6.31297 6.44652 7.00393 7.12206 8.67140 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.015111 B = 0.002534 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.525786 B =11045.297215 C =11506.605299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.146 4.146 3 C -0.113 4.113 4 C 0.093 3.907 5 O -0.405 6.405 6 C 0.058 3.942 7 C 0.118 3.882 8 N -0.703 5.703 9 C 0.560 3.440 10 O -0.584 6.584 11 C -0.157 4.157 12 C -0.063 4.063 13 C -0.120 4.120 14 C -0.062 4.062 15 C -0.129 4.129 16 S -0.093 6.093 17 C -0.537 4.537 18 H 0.066 0.934 19 C 0.020 3.980 20 N -0.905 5.905 21 Si 0.991 3.009 22 H -0.260 1.260 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.046 4.046 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.416 0.584 38 H 0.170 0.830 39 H 0.176 0.824 40 H 0.136 0.864 41 H 0.274 0.726 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.962 19.265 4.851 31.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.146 4.146 3 C -0.170 4.170 4 C 0.018 3.982 5 O -0.326 6.326 6 C -0.018 4.018 7 C -0.005 4.005 8 N -0.356 5.356 9 C 0.348 3.652 10 O -0.465 6.465 11 C -0.162 4.162 12 C -0.081 4.081 13 C -0.140 4.140 14 C -0.083 4.083 15 C -0.240 4.240 16 S 0.141 5.859 17 C -0.684 4.684 18 H 0.084 0.916 19 C -0.186 4.186 20 N -0.542 5.542 21 Si 0.813 3.187 22 H -0.185 1.185 23 H -0.194 1.194 24 H -0.197 1.197 25 C -0.067 4.067 26 H 0.119 0.881 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.254 0.746 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 24.423 17.522 4.864 30.449 hybrid contribution -1.026 1.068 0.998 1.786 sum 23.396 18.590 5.862 30.452 Atomic orbital electron populations 1.23749 0.96119 1.01782 1.01123 1.21911 0.95746 0.95590 1.01324 1.20813 1.00383 0.92615 1.03157 1.21387 0.90869 0.83979 1.01999 1.87904 1.34508 1.14369 1.95778 1.22790 0.94095 0.81351 1.03602 1.21529 0.93791 0.99216 0.85990 1.45656 1.33138 1.35396 1.21425 1.18403 0.80083 0.80675 0.86007 1.90753 1.68983 1.38994 1.47808 1.19966 0.99291 1.00658 0.96295 1.21682 0.98964 0.95478 0.91995 1.21548 0.94801 0.99310 0.98310 1.22075 0.96175 0.91920 0.98147 1.22504 1.01394 1.02655 0.97494 1.83449 0.99468 1.29912 1.73029 1.23028 0.96688 1.04799 1.43927 0.91563 1.26007 1.00901 0.95916 0.95745 1.70098 1.24646 1.15330 1.44078 0.85110 0.76596 0.78468 0.78546 1.18477 1.19431 1.19665 1.21630 0.93022 0.96658 0.95437 0.88146 0.89154 0.90371 0.91514 0.90593 0.90905 0.90372 0.89305 0.90063 0.92449 0.89238 0.74593 0.81283 0.80686 0.84602 0.91667 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 13.68 67.78 0.93 -2.23 16 2 C -0.15 -1.86 6.05 -16.48 -0.10 -1.96 16 3 C -0.11 -0.90 10.12 71.24 0.72 -0.18 16 4 C 0.09 0.97 6.35 71.24 0.45 1.42 16 5 O -0.41 -6.01 8.68 -148.98 -1.29 -7.30 16 6 C 0.06 0.61 6.07 71.98 0.44 1.05 16 7 C 0.12 2.15 6.06 86.38 0.52 2.67 16 8 N -0.70 -15.32 5.45 -465.94 -2.54 -17.86 16 9 C 0.56 18.44 7.77 86.79 0.67 19.12 16 10 O -0.58 -24.67 16.34 -3.88 -0.06 -24.74 16 11 C -0.16 -5.34 5.87 -20.11 -0.12 -5.46 16 12 C -0.06 -1.52 9.54 22.57 0.22 -1.30 16 13 C -0.12 -3.02 10.02 22.21 0.22 -2.80 16 14 C -0.06 -2.21 9.79 22.48 0.22 -1.99 16 15 C -0.13 -5.85 5.45 22.65 0.12 -5.73 16 16 S -0.09 -5.20 21.40 -56.49 -1.21 -6.40 16 17 C -0.54 -32.17 9.46 67.94 0.64 -31.53 16 18 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 19 C 0.02 1.15 5.49 84.84 0.47 1.61 16 20 N -0.91 -55.37 13.22 21.64 0.29 -55.09 16 21 Si 0.99 45.47 29.55 68.60 2.03 47.50 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 C -0.05 -2.00 9.34 22.70 0.21 -1.79 16 26 H 0.10 1.47 7.83 -2.91 -0.02 1.45 16 27 H 0.09 1.86 6.84 -2.92 -0.02 1.84 16 28 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.07 0.54 7.78 -2.39 -0.02 0.52 16 30 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.42 6.46 6.50 -92.71 -0.60 5.86 16 38 H 0.17 2.36 6.40 -2.91 -0.02 2.34 16 39 H 0.18 2.72 8.06 -2.91 -0.02 2.69 16 40 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 41 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.10 5.11 7.65 -2.91 -0.02 5.09 16 Total: -1.00 -80.55 377.42 3.25 -77.30 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.42 Total: 15.67 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 5.62 Total: -29.08 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -2.25 Total: -72.94 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.36 Total: -32.04 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.21 Total: -6.40 kcal Total: -80.55 3.25 -77.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136192671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.063 kcal (2) G-P(sol) polarization free energy of solvation -80.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds