Wall clock time and date at job start Tue Mar 31 2020 12:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.49684 * 2 1 4 4 C 1.53039 * 109.52442 * 239.91499 * 2 1 3 5 5 C 1.53039 * 109.53525 * 178.66793 * 4 2 1 6 6 C 1.53193 * 109.31561 * 61.36513 * 5 4 2 7 7 N 1.46930 * 108.77264 * 305.36627 * 6 5 4 8 8 C 1.34784 * 120.62677 * 233.58381 * 7 6 5 9 9 O 1.21542 * 119.99446 * 173.65101 * 8 7 6 10 10 C 1.47855 * 119.99967 * 353.64866 * 8 7 6 11 11 C 1.39680 * 120.10215 * 140.77644 * 10 8 7 12 12 C 1.38036 * 120.03935 * 179.74598 * 11 10 8 13 13 C 1.38182 * 120.24628 * 0.55252 * 12 11 10 14 14 C 1.39177 * 120.19875 * 359.70565 * 13 12 11 15 15 S 1.76196 * 120.02122 * 180.02562 * 14 13 12 16 16 C 1.76201 * 100.00224 * 95.55222 * 15 14 13 17 17 H 1.07994 * 119.99882 * 355.58397 * 16 15 14 18 18 C 1.38732 * 119.99749 * 175.58478 * 16 15 14 19 19 N 1.31625 * 120.00240 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99831 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.46853 * 89.99871 * 20 18 16 22 22 H 1.48496 * 109.47292 * 209.99799 * 20 18 16 23 23 H 1.48495 * 109.47004 * 330.00536 * 20 18 16 24 24 C 1.38876 * 119.96345 * 0.02562 * 14 13 12 25 25 C 1.46922 * 118.74133 * 53.60669 * 7 6 5 26 26 H 1.09002 * 109.47124 * 299.94216 * 1 2 3 27 27 H 1.08999 * 109.47042 * 59.93806 * 1 2 3 28 28 H 1.09002 * 109.46963 * 179.97438 * 1 2 3 29 29 H 0.96697 * 114.00387 * 60.06089 * 3 2 1 30 30 H 1.09000 * 109.46092 * 298.68796 * 4 2 1 31 31 H 1.08999 * 109.45831 * 58.66225 * 4 2 1 32 32 H 1.09007 * 109.49986 * 301.41432 * 5 4 2 33 33 H 1.08999 * 109.49479 * 181.31704 * 5 4 2 34 34 H 1.08999 * 109.59211 * 185.57372 * 6 5 4 35 35 H 1.09003 * 109.58388 * 65.14769 * 6 5 4 36 36 H 1.08002 * 119.97520 * 0.02562 * 11 10 8 37 37 H 1.08006 * 119.87591 * 180.30413 * 12 11 10 38 38 H 1.07996 * 119.89559 * 179.72307 * 13 12 11 39 39 H 0.97004 * 119.99759 * 179.97438 * 19 18 16 40 40 H 1.07997 * 120.12842 * 180.02562 * 24 14 13 41 41 H 1.09002 * 109.58694 * 66.18004 * 25 7 6 42 42 H 1.09003 * 109.58618 * 186.60305 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0070 1.3471 0.0000 4 6 2.0415 -0.7230 -1.2481 5 6 3.5715 -0.6942 -1.2652 6 6 4.1060 -1.4255 -0.0297 7 7 3.5046 -0.8280 1.1703 8 6 4.2807 -0.3847 2.1792 9 8 3.7811 0.2109 3.1136 10 6 5.7396 -0.6230 2.1494 11 6 6.6206 0.3686 2.5870 12 6 7.9821 0.1427 2.5635 13 6 8.4804 -1.0588 2.0971 14 6 7.6120 -2.0518 1.6536 15 16 8.2524 -3.5824 1.0604 16 6 8.1343 -4.5523 2.5267 17 1 7.8093 -4.0971 3.4505 18 6 8.4588 -5.9008 2.4944 19 7 8.8553 -6.4555 1.3685 20 14 8.3342 -6.9289 4.0490 21 1 6.9726 -7.5135 4.1481 22 1 9.3395 -8.0209 4.0022 23 1 8.5912 -6.0697 5.2326 24 6 6.2404 -1.8358 1.6787 25 6 2.0413 -0.7233 1.2499 26 1 -0.3633 0.5129 0.8905 27 1 -0.3633 0.5148 -0.8894 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7227 1.8650 0.7655 30 1 1.6979 -1.7574 -1.2350 31 1 1.6591 -0.2246 -2.1388 32 1 3.9162 0.3398 -1.2534 33 1 3.9346 -1.1889 -2.1661 34 1 5.1902 -1.3229 0.0151 35 1 3.8387 -2.4807 -0.0856 36 1 6.2359 1.3109 2.9483 37 1 8.6607 0.9095 2.9071 38 1 9.5468 -1.2278 2.0770 39 1 9.0826 -7.3983 1.3461 40 1 5.5641 -2.6047 1.3355 41 1 1.6057 -1.7213 1.2984 42 1 1.7632 -0.1574 2.1391 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152344706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:37 Heat of formation + Delta-G solvation = -84.076848 kcal Electronic energy + Delta-G solvation = -24939.465045 eV Core-core repulsion = 21395.363204 eV Total energy + Delta-G solvation = -3544.101841 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.78205 -39.93368 -38.86198 -36.70537 -34.63624 -33.76513 -32.69833 -31.97599 -31.90292 -27.94473 -27.71203 -26.97959 -24.27072 -23.84841 -23.24968 -21.51968 -20.70958 -19.70380 -18.44713 -17.88747 -17.73549 -16.92344 -16.90697 -16.34280 -16.29377 -16.01345 -15.74109 -15.31401 -15.20312 -14.77661 -14.61408 -14.44793 -14.03306 -13.89692 -13.72148 -13.27032 -13.16863 -13.11567 -12.98198 -12.97127 -12.65651 -12.60404 -12.43659 -12.04566 -11.96798 -11.72309 -11.42573 -11.30611 -11.20097 -10.97256 -10.69017 -9.94218 -9.71365 -9.59720 -8.77177 -8.38166 -6.16739 -0.10907 0.22418 1.31792 1.37022 1.46156 1.58828 1.68095 1.87128 2.24812 2.69677 2.95105 3.28679 3.33382 3.43230 3.65200 3.80066 3.82574 3.91130 4.02125 4.06122 4.21565 4.32609 4.40077 4.44214 4.51200 4.61941 4.65847 4.69980 4.76502 4.83253 4.85786 4.93484 5.06001 5.14986 5.20393 5.23374 5.33738 5.37914 5.40475 5.45863 5.46769 5.82671 6.17526 6.19906 6.78203 6.96840 7.03423 8.68285 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.015408 B = 0.003646 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.857551 B = 7678.418250 C = 8249.070066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 O -0.569 6.569 4 C -0.106 4.106 5 C -0.125 4.125 6 C 0.091 3.909 7 N -0.593 5.593 8 C 0.567 3.433 9 O -0.575 6.575 10 C -0.153 4.153 11 C -0.064 4.064 12 C -0.122 4.122 13 C -0.066 4.066 14 C -0.127 4.127 15 S -0.073 6.073 16 C -0.540 4.540 17 H 0.064 0.936 18 C 0.027 3.973 19 N -0.902 5.902 20 Si 0.984 3.016 21 H -0.269 1.269 22 H -0.271 1.271 23 H -0.269 1.269 24 C -0.051 4.051 25 C 0.081 3.919 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.383 0.617 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.166 0.834 38 H 0.136 0.864 39 H 0.274 0.726 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.045 12.813 -4.165 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.077 3.923 3 O -0.376 6.376 4 C -0.143 4.143 5 C -0.163 4.163 6 C -0.031 4.031 7 N -0.324 5.324 8 C 0.356 3.644 9 O -0.457 6.457 10 C -0.158 4.158 11 C -0.083 4.083 12 C -0.141 4.141 13 C -0.087 4.087 14 C -0.238 4.238 15 S 0.161 5.839 16 C -0.687 4.687 17 H 0.082 0.918 18 C -0.179 4.179 19 N -0.539 5.539 20 Si 0.807 3.193 21 H -0.194 1.194 22 H -0.195 1.195 23 H -0.193 1.193 24 C -0.073 4.073 25 C -0.041 4.041 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.232 0.768 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.154 0.846 39 H 0.083 0.917 40 H 0.145 0.855 41 H 0.109 0.891 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.578 12.396 -5.421 19.168 hybrid contribution -0.535 -0.354 2.523 2.604 sum -14.113 12.041 -2.898 18.777 Atomic orbital electron populations 1.22368 0.92962 1.04013 1.03378 1.21625 0.93931 0.82330 0.94376 1.86522 1.77940 1.23351 1.49812 1.21599 0.95064 1.00970 0.96683 1.21796 0.96475 1.00873 0.97172 1.22285 0.99254 0.97610 0.83944 1.47871 1.06972 1.59725 1.17822 1.18426 0.86574 0.77515 0.81864 1.90686 1.75499 1.43286 1.36193 1.19955 0.93026 0.96695 1.06136 1.21418 0.93096 0.98383 0.95365 1.21437 0.95167 0.97476 1.00059 1.22038 1.00342 0.92650 0.93635 1.22532 0.95935 1.00705 1.04634 1.83416 1.81518 1.00252 1.18687 1.23070 1.52859 0.97026 0.95731 0.91815 1.25859 0.93803 0.97736 1.00506 1.70081 1.42901 1.13410 1.27478 0.85155 0.78606 0.77735 0.77818 1.19377 1.19538 1.19337 1.21843 0.94719 0.95626 0.95089 1.22553 0.78901 1.02591 1.00098 0.91483 0.90927 0.90077 0.76829 0.88807 0.90066 0.92319 0.88956 0.89739 0.90032 0.83953 0.81667 0.84605 0.91677 0.85471 0.89141 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 8.82 71.98 0.64 -1.34 16 2 C 0.12 2.03 1.01 -10.72 -0.01 2.02 16 3 O -0.57 -11.74 12.17 -148.98 -1.81 -13.55 16 4 C -0.11 -1.72 4.92 30.62 0.15 -1.57 16 5 C -0.13 -2.54 5.94 30.67 0.18 -2.36 16 6 C 0.09 2.26 4.85 86.36 0.42 2.68 16 7 N -0.59 -16.15 2.91 -822.29 -2.40 -18.55 16 8 C 0.57 19.04 7.33 86.79 0.64 19.68 16 9 O -0.58 -21.80 16.33 -3.85 -0.06 -21.86 16 10 C -0.15 -5.29 5.16 -20.11 -0.10 -5.39 16 11 C -0.06 -1.95 9.63 22.57 0.22 -1.73 16 12 C -0.12 -3.51 10.02 22.21 0.22 -3.28 16 13 C -0.07 -2.34 9.79 22.48 0.22 -2.12 16 14 C -0.13 -5.30 5.45 22.65 0.12 -5.18 16 15 S -0.07 -3.73 21.40 -56.49 -1.21 -4.94 16 16 C -0.54 -30.36 9.46 67.94 0.64 -29.71 16 17 H 0.06 3.61 7.79 -2.91 -0.02 3.59 16 18 C 0.03 1.48 5.49 84.84 0.47 1.94 16 19 N -0.90 -52.03 13.22 21.64 0.29 -51.74 16 20 Si 0.98 43.29 29.55 68.60 2.03 45.31 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 24 C -0.05 -1.96 7.12 22.70 0.16 -1.79 16 25 C 0.08 1.73 5.37 86.36 0.46 2.19 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.38 6.19 9.05 -74.06 -0.67 5.52 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.41 7.61 -2.38 -0.02 1.39 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 2.43 4.72 -2.39 -0.01 2.42 16 35 H 0.08 1.89 8.09 -2.39 -0.02 1.87 16 36 H 0.14 3.84 8.05 -2.91 -0.02 3.82 16 37 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 39 H 0.27 14.68 8.31 -92.70 -0.77 13.90 16 40 H 0.13 4.85 6.47 -2.91 -0.02 4.83 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 2.00 7.00 -2.39 -0.02 1.98 16 Total: -1.00 -70.04 357.48 1.62 -68.42 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.37 Total: 22.88 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 4.43 Total: -25.97 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -2.11 Total: -70.29 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -1.88 Total: -35.41 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.21 Total: -4.94 kcal Total: -70.04 1.62 -68.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152344706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.660 kcal (2) G-P(sol) polarization free energy of solvation -70.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds