Wall clock time and date at job start Tue Mar 31 2020 12:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.51290 * 2 1 4 4 C 1.38240 * 119.99799 * 269.61935 * 3 2 1 5 5 C 1.38235 * 119.99583 * 179.78883 * 4 3 2 6 6 C 1.38233 * 120.00422 * 0.46496 * 5 4 3 7 7 C 1.38237 * 119.99958 * 359.77397 * 6 5 4 8 8 C 1.38234 * 119.99678 * 0.02562 * 7 6 5 9 9 C 1.53292 * 109.51458 * 239.89460 * 2 1 3 10 10 N 1.47156 * 108.38560 * 292.38472 * 9 2 1 11 11 C 1.34769 * 120.98633 * 129.44278 * 10 9 2 12 12 O 1.21282 * 119.99850 * 359.97438 * 11 10 9 13 13 C 1.50702 * 120.00466 * 179.97438 * 11 10 9 14 14 S 1.81000 * 109.47238 * 179.97438 * 13 11 10 15 15 C 1.76205 * 99.99610 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00040 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99527 * 179.97438 * 15 14 13 18 18 N 1.31625 * 120.00398 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99780 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47101 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47171 * 120.00313 * 19 17 15 22 22 H 1.48508 * 109.47025 * 240.00117 * 19 17 15 23 23 C 1.47150 * 118.03165 * 309.71226 * 10 9 2 24 24 C 1.52873 * 108.61066 * 50.22943 * 23 10 9 25 25 O 1.42962 * 109.29961 * 307.93528 * 24 23 10 26 26 H 1.09002 * 109.47513 * 180.10304 * 1 2 3 27 27 H 1.09006 * 109.47219 * 300.10712 * 1 2 3 28 28 H 1.09004 * 109.47040 * 60.10328 * 1 2 3 29 29 H 1.07997 * 119.99897 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.99870 * 180.25243 * 5 4 3 31 31 H 1.07997 * 120.00255 * 179.78756 * 6 5 4 32 32 H 1.07998 * 120.00419 * 180.02562 * 7 6 5 33 33 H 1.08006 * 119.99530 * 179.97438 * 8 7 6 34 34 H 1.09000 * 109.68514 * 172.65456 * 9 2 1 35 35 H 1.09007 * 109.71201 * 52.12181 * 9 2 1 36 36 H 1.09004 * 109.46923 * 59.99646 * 13 11 10 37 37 H 1.09004 * 109.46818 * 300.00196 * 13 11 10 38 38 H 0.97006 * 120.00587 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.68168 * 170.01090 * 23 10 9 40 40 H 1.08998 * 109.68389 * 290.56144 * 23 10 9 41 41 H 1.08998 * 109.58738 * 187.92518 * 24 23 10 42 42 H 1.09000 * 109.36752 * 67.81179 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0333 1.4204 0.0000 4 6 2.2717 2.0692 -1.1972 5 6 2.7292 3.3736 -1.1972 6 6 2.9576 4.0260 -0.0001 7 6 2.7240 3.3756 1.1971 8 6 2.2625 2.0726 1.1971 9 6 2.0420 -0.7247 -1.2500 10 7 1.6958 -2.1503 -1.1344 11 6 1.0708 -2.7961 -2.1387 12 8 0.7848 -2.2019 -3.1566 13 6 0.7271 -4.2566 -1.9970 14 16 -0.1004 -4.8304 -3.5010 15 6 -0.3788 -6.5167 -3.0725 16 1 -0.0563 -6.8901 -2.1118 17 6 -1.0134 -7.3648 -3.9694 18 7 -1.4069 -6.9097 -5.1400 19 14 -1.3092 -9.1525 -3.5149 20 1 -0.7758 -9.4119 -2.1536 21 1 -2.7670 -9.4344 -3.5380 22 1 -0.6193 -10.0323 -4.4923 23 6 2.0469 -2.8484 0.1124 24 6 1.5395 -2.0216 1.2940 25 8 2.0074 -0.6769 1.1653 26 1 -0.3634 -1.0277 0.0018 27 1 -0.3634 0.5155 0.8891 28 1 -0.3633 0.5122 -0.8909 29 1 2.0967 1.5582 -2.1324 30 1 2.9116 3.8819 -2.1325 31 1 3.3184 5.0440 -0.0001 32 1 2.9020 3.8854 2.1324 33 1 2.0803 1.5643 2.1325 34 1 3.1241 -0.6143 -1.3210 35 1 1.5710 -0.3034 -2.1381 36 1 0.0634 -4.3924 -1.1431 37 1 1.6403 -4.8313 -1.8424 38 1 -1.8502 -7.5025 -5.7670 39 1 1.5787 -3.8326 0.1265 40 1 3.1295 -2.9554 0.1810 41 1 1.9112 -2.4488 2.2253 42 1 0.4495 -2.0289 1.2986 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156962898.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:32 Heat of formation + Delta-G solvation = -64.993435 kcal Electronic energy + Delta-G solvation = -24632.807369 eV Core-core repulsion = 21089.533047 eV Total energy + Delta-G solvation = -3543.274322 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90823 -40.26854 -39.14459 -35.93673 -34.72033 -34.59464 -31.85582 -31.34486 -30.51932 -29.98591 -27.80314 -27.13659 -25.26373 -23.45960 -23.20485 -21.36153 -20.26120 -19.64527 -18.55670 -17.87757 -17.59334 -17.00527 -16.90059 -16.86152 -16.26368 -15.88179 -15.85533 -15.42746 -15.34178 -14.92486 -14.69320 -14.53064 -14.32125 -14.15277 -13.66638 -13.48578 -13.24932 -13.18759 -13.14322 -12.97180 -12.92286 -12.60236 -12.48684 -12.14612 -11.90757 -11.72147 -11.51215 -11.21480 -11.16705 -10.92361 -10.28199 -9.81678 -9.80346 -9.55938 -8.69155 -8.35782 -6.14336 0.37907 0.50974 1.20922 1.41141 1.43214 1.48493 1.55803 1.94299 2.25710 2.54666 2.88974 2.98744 3.19597 3.47961 3.62646 3.65406 3.79677 3.98506 4.04885 4.13732 4.17877 4.22214 4.24994 4.30650 4.38927 4.45277 4.50644 4.54718 4.65212 4.68135 4.70824 4.84268 4.84956 5.04433 5.09417 5.17167 5.30332 5.41297 5.57757 5.61566 5.63786 6.07760 6.11798 6.14931 6.19372 7.02628 7.05753 8.73686 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.031244 B = 0.002685 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.948509 B =10424.941965 C =11009.127139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.156 3.844 3 C -0.086 4.086 4 C -0.127 4.127 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.125 4.125 8 C -0.102 4.102 9 C 0.095 3.905 10 N -0.610 5.610 11 C 0.536 3.464 12 O -0.561 6.561 13 C -0.124 4.124 14 S -0.151 6.151 15 C -0.543 4.543 16 H 0.084 0.916 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.255 1.255 21 H -0.274 1.274 22 H -0.275 1.275 23 C 0.064 3.936 24 C 0.044 3.956 25 O -0.370 6.370 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.271 0.729 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.142 0.858 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 17.631 18.260 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.116 3.884 3 C -0.087 4.087 4 C -0.146 4.146 5 C -0.143 4.143 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.120 4.120 9 C -0.028 4.028 10 N -0.345 5.345 11 C 0.324 3.676 12 O -0.439 6.439 13 C -0.274 4.274 14 S 0.076 5.924 15 C -0.691 4.691 16 H 0.102 0.898 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.179 1.179 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.058 4.058 24 C -0.033 4.033 25 O -0.289 6.289 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.111 0.889 41 H 0.159 0.841 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.195 18.555 16.741 26.629 hybrid contribution -0.219 -1.918 0.493 1.993 sum 8.976 16.637 17.234 25.580 Atomic orbital electron populations 1.22302 0.94281 1.02518 1.03296 1.20328 0.93400 0.89483 0.85210 1.19416 1.01477 0.93208 0.94590 1.21171 1.00024 0.96078 0.97283 1.21384 0.99184 0.94221 0.99557 1.21534 0.99119 1.01005 0.92167 1.21481 0.99010 0.94457 0.99347 1.21107 0.98264 0.94971 0.97621 1.22323 1.00874 0.80393 0.99233 1.48090 1.58910 1.10712 1.16742 1.20170 0.76400 0.88415 0.82587 1.90678 1.54195 1.68750 1.30287 1.23363 1.05047 0.94871 1.04165 1.85629 1.75342 1.11155 1.20255 1.23215 1.45023 0.95077 1.05771 0.89759 1.26138 0.94231 1.04637 0.94208 1.70188 1.38395 1.38028 1.08225 0.84898 0.78128 0.75937 0.78940 1.17856 1.19968 1.20027 1.22691 1.02812 0.97613 0.82688 1.23151 0.99783 0.81396 0.98971 1.87979 1.72287 1.26151 1.42474 0.92412 0.90341 0.91998 0.86243 0.84228 0.83606 0.83676 0.85067 0.90262 0.89608 0.87129 0.87281 0.91998 0.87371 0.88910 0.84060 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 8.08 71.98 0.58 -3.24 16 2 C 0.16 3.48 0.94 -11.45 -0.01 3.47 16 3 C -0.09 -1.82 4.84 -19.87 -0.10 -1.91 16 4 C -0.13 -2.61 9.15 22.27 0.20 -2.40 16 5 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 6 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 7 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 8 C -0.10 -1.86 9.35 22.27 0.21 -1.65 16 9 C 0.09 2.49 4.32 86.35 0.37 2.86 16 10 N -0.61 -17.18 2.54 -818.17 -2.08 -19.26 16 11 C 0.54 20.39 7.73 87.66 0.68 21.07 16 12 O -0.56 -26.35 15.33 -3.04 -0.05 -26.40 16 13 C -0.12 -4.88 4.53 71.24 0.32 -4.56 16 14 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 15 C -0.54 -30.64 9.50 67.95 0.65 -29.99 16 16 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 17 C 0.01 0.71 5.49 84.86 0.47 1.17 16 18 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 19 Si 1.00 43.17 29.55 68.60 2.03 45.19 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 C 0.06 1.26 6.51 86.21 0.56 1.82 16 24 C 0.04 0.72 6.58 71.94 0.47 1.19 16 25 O -0.37 -7.53 9.22 -148.98 -1.37 -8.91 16 26 H 0.06 1.43 6.11 -2.39 -0.01 1.42 16 27 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.12 2.52 6.37 -2.91 -0.02 2.50 16 30 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 31 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.13 2.23 7.49 -2.91 -0.02 2.21 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 2.58 5.95 -2.38 -0.01 2.57 16 36 H 0.11 3.88 7.65 -2.39 -0.02 3.86 16 37 H 0.11 3.89 8.03 -2.39 -0.02 3.87 16 38 H 0.27 15.36 8.31 -92.70 -0.77 14.59 16 39 H 0.11 1.96 6.05 -2.39 -0.01 1.95 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 41 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.05 6.25 -2.39 -0.01 1.03 16 Total: -1.00 -75.79 353.82 3.75 -72.04 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 1.02 Total: 19.58 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 5.08 Total: -17.18 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.80 Total: -74.80 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.42 Total: -35.30 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -75.79 3.75 -72.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156962898.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.043 kcal (2) G-P(sol) polarization free energy of solvation -75.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds