Wall clock time and date at job start Tue Mar 31 2020 13:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47084 * 2 1 4 4 H 1.08998 * 109.47418 * 304.99695 * 3 2 1 5 5 C 1.50701 * 109.47192 * 185.00268 * 3 2 1 6 6 H 1.07997 * 120.00047 * 240.00153 * 5 3 2 7 7 C 1.37880 * 120.00165 * 59.99360 * 5 3 2 8 8 N 1.31515 * 119.99620 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00027 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47180 * 60.00846 * 9 7 5 11 11 H 1.48503 * 109.46858 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47576 * 300.00572 * 9 7 5 13 13 N 1.46495 * 109.47111 * 65.00325 * 3 2 1 14 14 C 1.34780 * 119.99812 * 274.99809 * 13 3 2 15 15 O 1.21277 * 120.00027 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99748 * 180.02562 * 14 13 3 17 17 S 1.81402 * 109.47003 * 179.97438 * 16 14 13 18 18 C 1.81398 * 103.00251 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47400 * 180.02562 * 18 17 16 20 20 O 1.21250 * 119.99733 * 0.02562 * 19 18 17 21 21 C 1.47164 * 119.99851 * 180.02562 * 19 18 17 22 22 C 1.39855 * 120.16680 * 180.02562 * 21 19 18 23 23 C 1.37890 * 119.82316 * 179.97438 * 22 21 19 24 24 C 1.38404 * 120.17220 * 359.97438 * 23 22 21 25 25 C 1.38409 * 120.34828 * 0.04376 * 24 23 22 26 26 C 1.37888 * 120.17293 * 359.95823 * 25 24 23 27 27 H 1.09006 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47186 * 299.99683 * 1 2 3 29 29 H 1.08997 * 109.47468 * 60.00163 * 1 2 3 30 30 H 1.08999 * 109.46973 * 239.99807 * 2 1 3 31 31 H 1.09003 * 109.47155 * 120.00163 * 2 1 3 32 32 H 0.97004 * 119.99375 * 179.97438 * 8 7 5 33 33 H 0.97003 * 120.00303 * 94.99794 * 13 3 2 34 34 H 1.09006 * 109.47331 * 60.00310 * 16 14 13 35 35 H 1.08998 * 109.47657 * 299.99684 * 16 14 13 36 36 H 1.09001 * 109.46695 * 60.00241 * 18 17 16 37 37 H 1.08995 * 109.47502 * 300.00492 * 18 17 16 38 38 H 1.07999 * 120.09085 * 359.69867 * 22 21 19 39 39 H 1.08000 * 119.91186 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.82754 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.91489 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.08508 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 3.4061 0.3373 -2.1733 9 14 6.0049 0.8799 -1.3812 10 1 6.5967 0.1451 -0.2344 11 1 6.3977 0.2165 -2.6504 12 1 6.5005 2.2798 -1.3809 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3392 2.6326 0.4341 16 6 0.0368 3.3385 2.6545 17 16 -1.6454 3.9986 2.4960 18 6 -1.9403 4.7578 4.1169 19 6 -3.3211 5.3609 4.1455 20 8 -4.0359 5.2855 3.1690 21 6 -3.8019 6.0412 5.3586 22 6 -5.0829 6.6016 5.3892 23 6 -5.5264 7.2370 6.5298 24 6 -4.7077 7.3205 7.6426 25 6 -3.4386 6.7687 7.6200 26 6 -2.9806 6.1301 6.4870 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0606 -2.9502 33 1 2.2720 2.1230 1.9978 34 1 0.7282 4.1541 2.8667 35 1 0.0681 2.6145 3.4687 36 1 -1.1992 5.5375 4.2931 37 1 -1.8600 3.9979 4.8941 38 1 -5.7214 6.5408 4.5203 39 1 -6.5155 7.6699 6.5551 40 1 -5.0609 7.8191 8.5331 41 1 -2.8054 6.8383 8.4921 42 1 -1.9899 5.7004 6.4708 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183907694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:56 Heat of formation + Delta-G solvation = -48.364857 kcal Electronic energy + Delta-G solvation = -23126.041289 eV Core-core repulsion = 19583.488037 eV Total energy + Delta-G solvation = -3542.553253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31299 -38.97611 -38.45008 -35.08023 -32.51967 -32.40844 -31.42716 -31.23244 -29.88178 -29.18205 -26.70309 -24.23738 -23.03024 -22.87036 -20.72407 -20.17797 -19.36061 -17.81545 -17.32267 -16.38182 -16.19132 -15.90502 -15.71838 -15.49433 -15.18581 -15.02374 -14.80737 -14.16825 -14.14763 -13.94371 -13.45837 -13.15535 -12.98972 -12.78416 -12.61683 -12.44396 -12.12532 -11.74722 -11.56699 -11.40523 -11.24118 -10.99754 -10.82497 -10.33906 -10.18679 -10.12742 -9.84176 -9.62624 -9.47716 -9.43548 -9.13254 -9.04702 -8.50933 -7.88032 -7.53336 -6.13049 -4.22986 0.24568 0.90044 1.37814 2.04707 2.51763 3.24356 3.29323 3.30437 3.31894 3.35896 3.58946 4.04076 4.32261 4.36200 4.46285 4.55898 4.75885 4.77784 4.91309 4.99175 5.06043 5.15802 5.18768 5.24325 5.36493 5.50942 5.51488 5.83844 5.93348 5.97156 6.39943 6.41184 6.47839 6.67713 7.04714 7.16712 7.20536 7.36139 7.42509 7.60480 7.70830 7.88711 8.17182 8.60562 8.74992 9.07324 9.44028 10.92165 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.031432 B = 0.002081 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.591935 B =13450.471047 C =13982.888025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.704 5.704 14 C 0.517 3.483 15 O -0.526 6.526 16 C -0.142 4.142 17 S -0.121 6.121 18 C -0.177 4.177 19 C 0.412 3.588 20 O -0.423 6.423 21 C -0.160 4.160 22 C -0.060 4.060 23 C -0.132 4.132 24 C -0.090 4.090 25 C -0.133 4.133 26 C -0.074 4.074 27 H 0.023 0.977 28 H 0.038 0.962 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 11.876 22.015 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.299 3.701 15 O -0.404 6.404 16 C -0.294 4.294 17 S 0.105 5.895 18 C -0.326 4.326 19 C 0.287 3.713 20 O -0.296 6.296 21 C -0.162 4.162 22 C -0.078 4.078 23 C -0.150 4.150 24 C -0.108 4.108 25 C -0.151 4.151 26 C -0.092 4.092 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.440 11.633 19.705 26.537 hybrid contribution 2.365 0.032 1.629 2.872 sum -11.075 11.664 21.334 26.718 Atomic orbital electron populations 1.21843 0.98209 0.98132 1.01334 1.21940 0.92689 0.99718 1.02286 1.18819 0.94218 0.89206 0.80767 0.93183 1.21174 0.90619 1.39262 1.06360 0.92154 1.24892 0.98624 0.94801 0.95384 1.69889 1.35228 1.37392 1.09285 0.86506 0.84816 0.78293 0.77454 1.20192 1.21115 1.20199 1.46424 1.14116 1.55987 1.18734 1.19373 0.83326 0.79746 0.87605 1.90732 1.50950 1.59019 1.39675 1.23729 0.99218 1.04080 1.02337 1.88207 1.15855 1.71904 1.13550 1.24077 1.00303 1.04735 1.03475 1.21684 0.86959 0.76355 0.86343 1.90598 1.56155 1.47801 1.35039 1.20395 0.96301 1.03854 0.95675 1.21475 0.94400 0.93555 0.98410 1.21193 1.00441 1.00185 0.93189 1.21464 0.93932 0.97151 0.98276 1.21173 0.96478 0.99014 0.98419 1.21494 0.99231 0.96426 0.92049 0.95800 0.94273 0.93081 0.88239 0.95062 0.92459 0.77947 0.87780 0.87865 0.86784 0.86809 0.84664 0.85251 0.85508 0.85255 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.81 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.76 2.24 -69.09 -0.15 6.61 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.94 8.73 -34.44 -0.30 -14.25 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.60 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.70 -14.15 5.02 -54.94 -0.28 -14.42 16 14 C 0.52 10.07 6.42 -10.98 -0.07 10.00 16 15 O -0.53 -12.47 13.00 5.56 0.07 -12.40 16 16 C -0.14 -1.97 6.42 36.01 0.23 -1.73 16 17 S -0.12 -1.85 20.01 -107.50 -2.15 -4.00 16 18 C -0.18 -1.72 5.04 36.01 0.18 -1.54 16 19 C 0.41 4.64 7.14 -30.69 -0.22 4.43 16 20 O -0.42 -6.40 15.86 5.58 0.09 -6.31 16 21 C -0.16 -1.43 5.87 -105.07 -0.62 -2.05 16 22 C -0.06 -0.51 9.60 -39.10 -0.38 -0.89 16 23 C -0.13 -0.85 10.03 -39.65 -0.40 -1.25 16 24 C -0.09 -0.49 10.04 -39.46 -0.40 -0.89 16 25 C -0.13 -0.74 10.03 -39.65 -0.40 -1.13 16 26 C -0.07 -0.48 9.47 -39.11 -0.37 -0.85 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 29 H 0.05 1.24 7.85 -51.93 -0.41 0.84 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.37 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.39 6.59 8.54 -40.82 -0.35 6.24 16 34 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.11 0.83 8.09 -51.92 -0.42 0.41 16 37 H 0.11 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.14 1.18 7.65 -52.49 -0.40 0.78 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 42 H 0.13 0.57 7.05 -52.49 -0.37 0.20 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -33.29 365.55 -9.83 -43.12 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.86 Total: 5.00 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.81 Total: -7.92 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.35 Total: -38.40 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.16 Total: -18.71 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.15 Total: -4.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.29 -9.83 -43.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183907694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.244 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds