Wall clock time and date at job start Tue Mar 31 2020 13:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46994 * 2 1 4 4 H 1.08997 * 109.47182 * 304.99911 * 3 2 1 5 5 C 1.50704 * 109.47084 * 184.99957 * 3 2 1 6 6 H 1.07996 * 120.00055 * 240.00139 * 5 3 2 7 7 C 1.37874 * 119.99930 * 59.99715 * 5 3 2 8 8 N 1.31513 * 119.99955 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99959 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46860 * 90.00651 * 9 7 5 11 11 H 1.48497 * 109.46851 * 210.00462 * 9 7 5 12 12 H 1.48497 * 109.47176 * 330.00161 * 9 7 5 13 13 O 1.45204 * 109.47042 * 64.99993 * 3 2 1 14 14 C 1.34228 * 117.00084 * 269.99835 * 13 3 2 15 15 O 1.20825 * 119.99667 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00097 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.39426 * 59.87596 * 16 14 13 18 18 C 1.52892 * 109.42828 * 299.99755 * 16 14 13 19 19 C 1.50605 * 109.74856 * 288.21603 * 18 16 14 20 20 O 1.21285 * 119.72345 * 142.12024 * 19 18 16 21 21 N 1.34421 * 120.55948 * 322.09817 * 19 18 16 22 22 C 1.39762 * 120.74034 * 5.57732 * 21 19 18 23 23 C 1.38829 * 120.07613 * 194.10338 * 22 21 19 24 24 C 1.38292 * 119.97476 * 179.77511 * 23 22 21 25 25 F 1.35104 * 120.00138 * 180.22346 * 24 23 22 26 26 C 1.38542 * 120.00066 * 0.49100 * 24 23 22 27 27 C 1.38218 * 120.08357 * 359.73632 * 26 24 23 28 28 C 1.38171 * 120.11832 * 0.44336 * 27 26 24 29 29 H 1.09004 * 109.46699 * 59.99717 * 1 2 3 30 30 H 1.08996 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47147 * 299.99926 * 1 2 3 32 32 H 1.09003 * 109.47147 * 240.00074 * 2 1 3 33 33 H 1.08999 * 109.47044 * 119.99947 * 2 1 3 34 34 H 0.97001 * 119.99688 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.42225 * 168.12732 * 18 16 14 36 36 H 1.09003 * 109.42585 * 48.30371 * 18 16 14 37 37 H 0.96994 * 119.62769 * 185.60576 * 21 19 18 38 38 H 1.07998 * 120.00902 * 359.75180 * 23 22 21 39 39 H 1.07993 * 119.96013 * 179.97438 * 26 24 23 40 40 H 1.07994 * 119.93993 * 180.14088 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0050 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7602 11 1 6.3829 0.9225 -2.8172 12 1 6.5570 2.0739 -0.6902 13 8 1.6558 2.0917 1.2407 14 6 0.4727 2.7255 1.2560 15 8 -0.2192 2.7370 0.2656 16 6 0.0074 3.4226 2.5084 17 1 0.7264 4.1952 2.7810 18 6 -0.1026 2.4062 3.6453 19 6 -1.2853 1.5042 3.4088 20 8 -1.2090 0.3266 3.6889 21 7 -2.4249 1.9934 2.8903 22 6 -2.4998 3.3187 2.4529 23 6 -3.7350 3.8980 2.1963 24 6 -3.8069 5.2109 1.7680 25 9 -5.0089 5.7766 1.5225 26 6 -2.6459 5.9445 1.5854 27 6 -1.4151 5.3675 1.8360 28 6 -1.3383 4.0549 2.2605 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0604 -2.9502 35 1 -0.2315 2.9327 4.5910 36 1 0.8075 1.8076 3.6857 37 1 -3.2042 1.4202 2.8193 38 1 -4.6395 3.3233 2.3308 39 1 -2.7027 6.9696 1.2505 40 1 -0.5117 5.9422 1.6950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187966240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:31 Heat of formation + Delta-G solvation = -149.303270 kcal Electronic energy + Delta-G solvation = -27766.600548 eV Core-core repulsion = 23653.457101 eV Total energy + Delta-G solvation = -4113.143447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.11255 -41.46284 -39.43508 -38.71361 -35.95705 -35.27892 -34.22783 -33.44244 -31.35711 -30.33562 -29.51319 -27.38867 -25.65615 -23.50147 -23.30196 -23.00581 -21.34424 -19.92055 -19.12398 -18.47964 -17.65183 -17.14500 -16.79047 -16.28437 -16.04690 -15.85239 -15.78130 -15.56805 -15.14346 -14.89479 -14.48182 -14.01142 -13.85874 -13.58124 -13.14926 -13.05298 -12.84817 -12.65602 -12.37589 -11.83189 -11.66538 -11.52516 -11.45488 -11.32077 -11.18731 -10.99092 -10.81973 -10.66366 -10.31145 -10.18693 -9.81955 -9.66803 -9.39439 -9.02386 -8.84482 -8.47988 -8.28842 -6.20820 -4.28423 0.79662 0.92576 2.36332 2.75923 2.84082 3.19427 3.23152 3.29390 3.33266 3.71759 3.94603 4.24182 4.29724 4.32216 4.38608 4.57974 4.80197 4.95248 5.09011 5.12158 5.19659 5.43501 5.55174 5.61330 5.62444 5.84999 5.89409 6.07339 6.22922 6.29597 6.43325 6.45838 6.59673 6.85244 6.91894 6.94978 7.14427 7.21462 7.58752 7.71127 7.81105 7.90122 8.12453 8.55455 8.83488 9.36904 10.85848 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.003790 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.562995 B = 7385.914648 C = 7943.185151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.224 3.776 4 H 0.047 0.953 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.352 6.352 14 C 0.450 3.550 15 O -0.500 6.500 16 C -0.041 4.041 17 H 0.132 0.868 18 C -0.134 4.134 19 C 0.522 3.478 20 O -0.509 6.509 21 N -0.661 5.661 22 C 0.212 3.788 23 C -0.195 4.195 24 C 0.135 3.865 25 F -0.137 7.137 26 C -0.177 4.177 27 C -0.037 4.037 28 C -0.116 4.116 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.266 0.734 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.412 0.588 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.609 9.936 11.002 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.172 3.828 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.268 6.268 14 C 0.291 3.709 15 O -0.389 6.389 16 C -0.060 4.060 17 H 0.150 0.850 18 C -0.173 4.173 19 C 0.311 3.689 20 O -0.383 6.383 21 N -0.305 5.305 22 C 0.115 3.885 23 C -0.216 4.216 24 C 0.115 3.885 25 F -0.115 7.115 26 C -0.197 4.197 27 C -0.055 4.055 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.250 0.750 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.547 9.185 10.693 18.222 hybrid contribution 0.182 -0.229 -0.500 0.580 sum -11.365 8.956 10.192 17.699 Atomic orbital electron populations 1.21824 0.98436 0.99024 1.00353 1.22020 0.92554 0.99330 1.03425 1.20711 0.95039 0.88730 0.78357 0.93521 1.21028 0.89557 1.39171 1.06293 0.91258 1.24884 0.99246 0.94713 0.95048 1.69892 1.35415 1.37695 1.09461 0.86283 0.83859 0.78708 0.77352 1.20329 1.20984 1.19602 1.86452 1.33672 1.62244 1.44418 1.22907 0.81409 0.77604 0.88952 1.90642 1.55255 1.57620 1.35368 1.19852 0.95297 0.98184 0.92696 0.85039 1.21801 0.98478 0.97591 0.99459 1.20694 0.83768 0.88730 0.75736 1.90808 1.82008 1.16253 1.49212 1.43570 1.15499 1.10858 1.60591 1.17156 0.92959 0.83782 0.94616 1.20514 0.97180 0.95026 1.08930 1.17297 0.80641 0.91271 0.99315 1.91512 1.43300 1.84892 1.91801 1.21025 0.90993 1.01531 1.06132 1.20699 0.97776 0.93091 0.93944 1.19005 0.92017 0.95017 1.05884 0.93034 0.94877 0.95222 0.87319 0.93885 0.92357 0.86475 0.85347 0.74968 0.84158 0.84250 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.57 37.16 0.32 -2.85 16 2 C -0.14 -3.41 5.49 -26.73 -0.15 -3.55 16 3 C 0.22 5.82 2.25 -27.88 -0.06 5.76 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.29 8.90 -34.44 -0.31 -14.60 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.83 11.29 55.43 0.63 -24.21 16 9 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 13 O -0.35 -7.89 9.49 -39.25 -0.37 -8.26 16 14 C 0.45 8.64 5.36 36.01 0.19 8.83 16 15 O -0.50 -10.92 13.17 -18.75 -0.25 -11.17 16 16 C -0.04 -0.54 2.84 -92.96 -0.26 -0.80 16 17 H 0.13 1.30 8.06 -51.93 -0.42 0.88 16 18 C -0.13 -1.62 5.52 -27.98 -0.15 -1.78 16 19 C 0.52 7.62 7.19 -11.19 -0.08 7.53 16 20 O -0.51 -9.17 17.92 5.55 0.10 -9.07 16 21 N -0.66 -8.22 5.35 -10.03 -0.05 -8.28 16 22 C 0.21 2.55 6.53 -83.80 -0.55 2.00 16 23 C -0.19 -2.05 9.88 -39.34 -0.39 -2.44 16 24 C 0.13 1.44 7.30 -39.45 -0.29 1.15 16 25 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 26 C -0.18 -1.74 10.02 -39.48 -0.40 -2.14 16 27 C -0.04 -0.38 9.67 -39.61 -0.38 -0.76 16 28 C -0.12 -1.42 4.17 -104.40 -0.43 -1.85 16 29 H 0.05 1.22 7.80 -51.93 -0.40 0.81 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.65 5.88 -51.93 -0.31 0.35 16 32 H 0.11 2.96 5.95 -51.93 -0.31 2.65 16 33 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.13 1.70 7.82 -51.93 -0.41 1.29 16 37 H 0.41 4.38 8.81 -40.82 -0.36 4.02 16 38 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 40 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -32.75 340.52 -7.49 -40.24 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.66 Total: 5.24 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -3.04 Total: -3.88 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.57 Total: -32.48 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.52 Total: -28.49 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.75 -7.49 -40.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187966240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.061 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds