Wall clock time and date at job start Tue Mar 31 2020 13:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46994 * 2 1 4 4 H 1.08997 * 109.47182 * 304.99911 * 3 2 1 5 5 C 1.50704 * 109.47084 * 184.99957 * 3 2 1 6 6 H 1.07996 * 120.00055 * 240.00139 * 5 3 2 7 7 C 1.37874 * 119.99930 * 59.99715 * 5 3 2 8 8 N 1.31513 * 119.99955 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99959 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46860 * 90.00651 * 9 7 5 11 11 H 1.48497 * 109.46851 * 210.00462 * 9 7 5 12 12 H 1.48497 * 109.47176 * 330.00161 * 9 7 5 13 13 O 1.45204 * 109.47042 * 64.99993 * 3 2 1 14 14 C 1.34228 * 117.00084 * 269.99835 * 13 3 2 15 15 O 1.20825 * 119.99667 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00097 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.39426 * 59.87596 * 16 14 13 18 18 C 1.52892 * 109.42828 * 299.99755 * 16 14 13 19 19 C 1.50605 * 109.74856 * 288.21603 * 18 16 14 20 20 O 1.21285 * 119.72345 * 142.12024 * 19 18 16 21 21 N 1.34421 * 120.55948 * 322.09817 * 19 18 16 22 22 C 1.39762 * 120.74034 * 5.57732 * 21 19 18 23 23 C 1.38829 * 120.07613 * 194.10338 * 22 21 19 24 24 C 1.38292 * 119.97476 * 179.77511 * 23 22 21 25 25 F 1.35104 * 120.00138 * 180.22346 * 24 23 22 26 26 C 1.38542 * 120.00066 * 0.49100 * 24 23 22 27 27 C 1.38218 * 120.08357 * 359.73632 * 26 24 23 28 28 C 1.38171 * 120.11832 * 0.44336 * 27 26 24 29 29 H 1.09004 * 109.46699 * 59.99717 * 1 2 3 30 30 H 1.08996 * 109.46909 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47147 * 299.99926 * 1 2 3 32 32 H 1.09003 * 109.47147 * 240.00074 * 2 1 3 33 33 H 1.08999 * 109.47044 * 119.99947 * 2 1 3 34 34 H 0.97001 * 119.99688 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.42225 * 168.12732 * 18 16 14 36 36 H 1.09003 * 109.42585 * 48.30371 * 18 16 14 37 37 H 0.96994 * 119.62769 * 185.60576 * 21 19 18 38 38 H 1.07998 * 120.00902 * 359.75180 * 23 22 21 39 39 H 1.07993 * 119.96013 * 179.97438 * 26 24 23 40 40 H 1.07994 * 119.93993 * 180.14088 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3375 -2.1732 9 14 6.0050 0.8813 -1.3817 10 1 6.5549 -0.3501 -0.7602 11 1 6.3829 0.9225 -2.8172 12 1 6.5570 2.0739 -0.6902 13 8 1.6558 2.0917 1.2407 14 6 0.4727 2.7255 1.2560 15 8 -0.2192 2.7370 0.2656 16 6 0.0074 3.4226 2.5084 17 1 0.7264 4.1952 2.7810 18 6 -0.1026 2.4062 3.6453 19 6 -1.2853 1.5042 3.4088 20 8 -1.2090 0.3266 3.6889 21 7 -2.4249 1.9934 2.8903 22 6 -2.4998 3.3187 2.4529 23 6 -3.7350 3.8980 2.1963 24 6 -3.8069 5.2109 1.7680 25 9 -5.0089 5.7766 1.5225 26 6 -2.6459 5.9445 1.5854 27 6 -1.4151 5.3675 1.8360 28 6 -1.3383 4.0549 2.2605 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0604 -2.9502 35 1 -0.2315 2.9327 4.5910 36 1 0.8075 1.8076 3.6857 37 1 -3.2042 1.4202 2.8193 38 1 -4.6395 3.3233 2.3308 39 1 -2.7027 6.9696 1.2505 40 1 -0.5117 5.9422 1.6950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187966240.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:30 Heat of formation + Delta-G solvation = -169.039595 kcal Electronic energy + Delta-G solvation = -27767.456379 eV Core-core repulsion = 23653.457101 eV Total energy + Delta-G solvation = -4113.999278 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.121 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.95121 -42.56040 -40.97443 -39.73821 -37.66439 -36.29650 -35.62212 -35.10146 -33.35247 -31.20564 -30.43154 -29.36490 -26.87980 -25.22409 -24.29485 -24.04849 -22.86867 -21.62722 -20.37272 -19.41292 -18.95317 -18.64511 -18.31757 -17.69367 -17.23040 -16.88880 -16.75809 -16.70349 -16.62686 -16.18447 -16.08767 -15.01615 -14.99280 -14.79409 -14.65617 -14.41847 -14.07164 -13.89585 -13.67818 -13.38565 -13.29648 -13.10445 -13.03072 -12.81913 -12.60640 -12.54906 -12.31858 -12.13320 -11.81122 -11.75924 -11.44313 -11.35714 -11.15244 -10.84019 -10.52641 -9.88071 -9.20767 -8.26499 -6.43330 -0.11039 0.09257 1.32522 1.33080 1.43333 1.45146 1.56024 1.81544 1.96388 2.39610 2.66702 3.02994 3.03702 3.30562 3.37562 3.47252 3.68765 3.94028 4.03313 4.12193 4.29920 4.30780 4.31932 4.39053 4.50648 4.55285 4.75399 4.77778 4.80766 4.89647 5.01364 5.10792 5.14931 5.23797 5.32909 5.52062 5.54312 5.64341 5.72065 5.95459 5.97133 6.13745 6.62088 6.77165 6.98716 7.28470 8.80232 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.003790 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.562995 B = 7385.914648 C = 7943.185151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.129 4.129 3 C 0.230 3.770 4 H 0.009 0.991 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.980 3.020 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.261 1.261 13 O -0.359 6.359 14 C 0.442 3.558 15 O -0.530 6.530 16 C -0.028 4.028 17 H 0.172 0.828 18 C -0.131 4.131 19 C 0.515 3.485 20 O -0.555 6.555 21 N -0.656 5.656 22 C 0.196 3.804 23 C -0.193 4.193 24 C 0.126 3.874 25 F -0.138 7.138 26 C -0.171 4.171 27 C -0.036 4.036 28 C -0.131 4.131 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.032 0.968 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.269 0.731 35 H 0.165 0.835 36 H 0.117 0.883 37 H 0.417 0.583 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.343 11.732 12.118 20.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.167 4.167 3 C 0.177 3.823 4 H 0.027 0.973 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.803 3.197 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.185 1.185 13 O -0.275 6.275 14 C 0.285 3.715 15 O -0.420 6.420 16 C -0.047 4.047 17 H 0.189 0.811 18 C -0.171 4.171 19 C 0.305 3.695 20 O -0.433 6.433 21 N -0.300 5.300 22 C 0.100 3.900 23 C -0.214 4.214 24 C 0.107 3.893 25 F -0.117 7.117 26 C -0.190 4.190 27 C -0.054 4.054 28 C -0.134 4.134 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.183 0.817 36 H 0.135 0.865 37 H 0.256 0.744 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.319 11.024 11.816 19.730 hybrid contribution -0.044 -0.693 -0.882 1.122 sum -11.363 10.331 10.935 18.852 Atomic orbital electron populations 1.21649 0.96797 0.99918 0.99700 1.21868 0.93921 0.98848 1.02069 1.20293 0.94555 0.88706 0.78718 0.97335 1.21346 0.90419 1.39868 1.06858 0.91138 1.25804 1.04163 0.93893 0.94417 1.70020 1.37452 1.38029 1.09912 0.85223 0.77801 0.79159 0.77499 1.19576 1.20510 1.18545 1.86439 1.35806 1.62887 1.42404 1.24201 0.79811 0.76653 0.90821 1.90623 1.55597 1.58562 1.37240 1.19983 0.96737 0.98581 0.89385 0.81100 1.21893 0.96850 0.97137 1.01171 1.21173 0.84734 0.88487 0.75114 1.90784 1.82918 1.18056 1.51528 1.43513 1.15262 1.11342 1.59855 1.17301 0.93637 0.83452 0.95636 1.20688 0.97411 0.95254 1.08041 1.17478 0.80934 0.91465 0.99473 1.91512 1.43482 1.84878 1.91825 1.21335 0.90388 1.02541 1.04774 1.21003 0.98976 0.92546 0.92899 1.19092 0.91349 0.95867 1.07116 0.94456 0.93141 0.94932 0.89584 0.94104 0.92142 0.81714 0.86516 0.74366 0.82488 0.81865 0.81680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.57 71.98 0.62 -5.14 16 2 C -0.13 -6.69 5.49 30.60 0.17 -6.52 16 3 C 0.23 12.35 2.25 29.85 0.07 12.41 16 4 H 0.01 0.53 7.16 -2.39 -0.02 0.52 16 5 C -0.55 -30.41 8.90 25.60 0.23 -30.18 16 6 H 0.07 3.79 7.81 -2.91 -0.02 3.77 16 7 C 0.02 0.92 5.29 84.65 0.45 1.37 16 8 N -0.92 -52.35 11.29 21.45 0.24 -52.10 16 9 Si 0.98 42.30 29.54 68.60 2.03 44.32 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 11 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 O -0.36 -16.27 9.49 -51.40 -0.49 -16.76 16 14 C 0.44 16.82 5.36 71.24 0.38 17.20 16 15 O -0.53 -23.41 13.17 21.97 0.29 -23.12 16 16 C -0.03 -0.68 2.84 -12.31 -0.03 -0.71 16 17 H 0.17 2.74 8.06 -2.39 -0.02 2.72 16 18 C -0.13 -2.94 5.52 29.78 0.16 -2.78 16 19 C 0.52 14.71 7.19 87.68 0.63 15.34 16 20 O -0.56 -20.24 17.92 -3.05 -0.05 -20.29 16 21 N -0.66 -15.79 5.35 -304.22 -1.63 -17.42 16 22 C 0.20 4.39 6.53 38.17 0.25 4.64 16 23 C -0.19 -3.71 9.88 22.42 0.22 -3.49 16 24 C 0.13 2.41 7.30 22.36 0.16 2.58 16 25 F -0.14 -2.74 17.27 44.97 0.78 -1.96 16 26 C -0.17 -2.85 10.02 22.34 0.22 -2.63 16 27 C -0.04 -0.64 9.67 22.25 0.22 -0.42 16 28 C -0.13 -2.90 4.17 -19.72 -0.08 -2.99 16 29 H 0.04 1.81 7.80 -2.39 -0.02 1.79 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.03 1.46 5.88 -2.39 -0.01 1.45 16 32 H 0.09 4.86 5.95 -2.39 -0.01 4.85 16 33 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.17 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.12 2.96 7.82 -2.39 -0.02 2.94 16 37 H 0.42 8.74 8.81 -92.71 -0.82 7.92 16 38 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -73.35 340.52 5.10 -68.25 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.28 Total: 20.39 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 3.66 Total: -1.32 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -1.39 Total: -69.52 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -0.25 Total: -60.16 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -73.35 5.10 -68.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187966240.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.789 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds