Wall clock time and date at job start Tue Mar 31 2020 12:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.22442 * 2 1 4 4 C 1.52163 * 109.35199 * 119.62728 * 2 1 3 5 5 N 1.46386 * 111.23053 * 58.82762 * 4 2 1 6 6 C 1.34784 * 119.81389 * 243.54036 * 5 4 2 7 7 O 1.21284 * 119.99852 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00069 * 179.97438 * 6 5 4 9 9 S 1.80993 * 109.47167 * 180.02562 * 8 6 5 10 10 C 1.76202 * 100.00112 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99992 * 359.97438 * 10 9 8 12 12 C 1.38800 * 120.00183 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99734 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00163 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.46968 * 89.99986 * 14 12 10 16 16 H 1.48497 * 109.47145 * 210.00032 * 14 12 10 17 17 H 1.48500 * 109.47023 * 329.99990 * 14 12 10 18 18 C 1.46670 * 120.37358 * 63.51429 * 5 4 2 19 19 C 1.51531 * 108.76691 * 279.86584 * 18 5 4 20 20 C 1.37714 * 120.73657 * 244.73422 * 19 18 5 21 21 C 1.38426 * 119.71171 * 182.25696 * 20 19 18 22 22 C 1.38287 * 120.00427 * 0.55664 * 21 20 19 23 23 C 1.38146 * 120.30435 * 359.05573 * 22 21 20 24 24 C 1.38683 * 118.62201 * 66.21836 * 19 18 5 25 25 O 1.35720 * 120.15144 * 353.24240 * 24 19 18 26 26 H 1.08998 * 109.47276 * 300.37123 * 1 2 3 27 27 H 1.08995 * 109.47485 * 60.37261 * 1 2 3 28 28 H 1.09009 * 109.46964 * 180.37190 * 1 2 3 29 29 H 1.09003 * 109.47021 * 179.62462 * 3 2 1 30 30 H 1.08995 * 109.47374 * 299.62930 * 3 2 1 31 31 H 1.09006 * 109.47104 * 59.62958 * 3 2 1 32 32 H 1.09008 * 109.12786 * 298.37789 * 4 2 1 33 33 H 1.09000 * 109.13402 * 179.28047 * 4 2 1 34 34 H 1.09003 * 109.46732 * 299.99773 * 8 6 5 35 35 H 1.09001 * 109.47343 * 59.99498 * 8 6 5 36 36 H 0.97005 * 120.00107 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.58661 * 160.07868 * 18 5 4 38 38 H 1.08998 * 109.58753 * 39.65573 * 18 5 4 39 39 H 1.08001 * 120.14504 * 2.22769 * 20 19 18 40 40 H 1.08004 * 119.99645 * 180.53561 * 21 20 19 41 41 H 1.08002 * 119.85139 * 179.04056 * 22 21 20 42 42 H 1.08002 * 120.08196 * 179.74895 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0337 1.4447 0.0000 4 6 2.0342 -0.7097 1.2480 5 7 1.5435 -2.0875 1.3090 6 6 0.7267 -2.4641 2.3129 7 8 0.4008 -1.6625 3.1626 8 6 0.2186 -3.8813 2.3795 9 16 -0.8472 -4.0726 3.8298 10 6 -1.2873 -5.7707 3.6643 11 1 -0.9045 -6.3496 2.8369 12 6 -2.1261 -6.3644 4.5974 13 7 -2.5922 -5.6589 5.6062 14 14 -2.5932 -8.1644 4.4216 15 1 -1.6047 -9.0051 5.1434 16 1 -3.9441 -8.3838 4.9978 17 1 -2.6022 -8.5353 2.9837 18 6 1.9350 -3.0604 0.2836 19 6 1.0757 -2.8453 -0.9459 20 6 0.1958 -3.8169 -1.3683 21 6 -0.5448 -3.6176 -2.5206 22 6 -0.3910 -2.4519 -3.2486 23 6 0.4857 -1.4736 -2.8210 24 6 1.2159 -1.6622 -1.6557 25 8 2.0045 -0.6679 -1.1746 26 1 -0.3634 0.5196 0.8866 27 1 -0.3634 0.5080 -0.8932 28 1 -0.3633 -1.0277 0.0067 29 1 3.1237 1.4494 0.0067 30 1 1.6737 1.9551 -0.8932 31 1 1.6628 1.9589 0.8867 32 1 1.6907 -0.1688 2.1299 33 1 3.1241 -0.7189 1.2380 34 1 -0.3516 -4.1056 1.4780 35 1 1.0627 -4.5668 2.4555 36 1 -3.1787 -6.0737 6.2581 37 1 1.7845 -4.0712 0.6625 38 1 2.9843 -2.9171 0.0257 39 1 0.0844 -4.7305 -0.8032 40 1 -1.2425 -4.3727 -2.8514 41 1 -0.9587 -2.3057 -4.1557 42 1 0.6060 -0.5663 -3.3945 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290246607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:47 Heat of formation + Delta-G solvation = -39.548112 kcal Electronic energy + Delta-G solvation = -25560.296301 eV Core-core repulsion = 22018.125371 eV Total energy + Delta-G solvation = -3542.170930 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.22514 -39.02402 -37.93678 -35.45105 -33.89891 -32.44771 -31.39128 -29.96848 -29.65201 -27.53932 -26.63624 -25.71349 -25.27787 -22.81949 -21.94390 -20.29105 -19.45125 -17.76735 -17.47807 -16.89495 -16.31460 -15.97799 -15.60422 -15.53583 -15.14227 -14.82205 -14.33578 -14.16713 -14.00728 -13.48219 -13.27456 -13.11887 -12.82538 -12.64652 -12.46985 -12.20870 -12.17190 -12.10562 -12.01460 -11.82283 -11.60105 -11.39405 -11.08064 -11.04336 -10.94478 -10.77250 -10.14582 -9.81152 -9.45945 -9.08729 -9.01271 -8.64647 -8.54701 -8.24965 -6.52268 -6.23488 -3.94210 1.01839 1.19766 2.86373 2.98141 3.18190 3.20812 3.26174 3.29178 3.55584 3.89918 4.18251 4.48925 4.65498 4.69582 4.72435 4.74807 4.91200 4.91624 5.07965 5.11935 5.18885 5.28554 5.35090 5.43737 5.45232 5.51544 5.53579 5.62753 5.70170 5.71659 5.83214 5.85543 5.86368 5.93586 6.07767 6.10346 6.22787 6.35283 6.39034 6.57118 6.62303 7.39059 7.48395 7.57512 8.33051 8.48589 9.21864 10.83937 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.004015 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.743759 B = 6972.778858 C = 8140.234667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 C -0.139 4.139 4 C 0.095 3.905 5 N -0.614 5.614 6 C 0.536 3.464 7 O -0.513 6.513 8 C -0.151 4.151 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.152 3.848 19 C -0.138 4.138 20 C -0.088 4.088 21 C -0.127 4.127 22 C -0.104 4.104 23 C -0.138 4.138 24 C 0.119 3.881 25 O -0.325 6.325 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.967 9.155 -17.610 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.067 3.933 3 C -0.197 4.197 4 C -0.029 4.029 5 N -0.348 5.348 6 C 0.324 3.676 7 O -0.387 6.387 8 C -0.302 4.302 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C 0.029 3.971 19 C -0.140 4.140 20 C -0.106 4.106 21 C -0.145 4.145 22 C -0.122 4.122 23 C -0.156 4.156 24 C 0.075 3.925 25 O -0.243 6.243 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.107 0.893 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.550 10.428 -16.203 21.081 hybrid contribution -0.116 -2.242 -1.163 2.528 sum 8.434 8.186 -17.366 20.969 Atomic orbital electron populations 1.22463 0.94187 1.03794 1.02970 1.22075 0.94649 0.92459 0.84133 1.21811 1.02201 0.92511 1.03140 1.21805 0.99173 0.83193 0.98726 1.47861 1.50115 1.10431 1.26439 1.20404 0.76937 0.90120 0.80111 1.90683 1.56043 1.53726 1.38247 1.23579 1.04352 0.94858 1.07375 1.85402 1.57190 1.14311 1.26389 1.22842 1.35093 0.95737 1.14616 0.90966 1.24980 0.95085 0.98949 0.94473 1.70016 1.31411 1.36368 1.12461 0.86183 0.77970 0.82960 0.78490 1.20252 1.20749 1.19680 1.20677 0.97733 0.93743 0.84933 1.20793 0.99615 0.95420 0.98159 1.20980 0.94715 0.98720 0.96226 1.21224 0.99973 0.97895 0.95455 1.21031 0.97934 0.93535 0.99742 1.21250 0.95829 1.00281 0.98268 1.18398 0.92448 0.87935 0.93689 1.86109 1.46254 1.47591 1.44349 0.90722 0.91909 0.91297 0.91426 0.91433 0.90346 0.87520 0.90807 0.89283 0.89236 0.92177 0.88451 0.89296 0.85126 0.85576 0.85734 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 7.43 37.16 0.28 -1.97 16 2 C 0.10 1.21 1.09 -91.05 -0.10 1.11 16 3 C -0.14 -1.22 8.81 37.16 0.33 -0.89 16 4 C 0.09 1.21 4.94 -4.53 -0.02 1.19 16 5 N -0.61 -9.04 2.00 -175.03 -0.35 -9.39 16 6 C 0.54 10.16 7.69 -10.98 -0.08 10.08 16 7 O -0.51 -11.48 15.16 5.55 0.08 -11.40 16 8 C -0.15 -3.05 4.55 36.01 0.16 -2.89 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.53 -15.01 9.50 30.94 0.29 -14.72 16 11 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 14 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 C 0.15 1.89 5.52 -4.69 -0.03 1.87 16 19 C -0.14 -1.73 4.52 -104.24 -0.47 -2.20 16 20 C -0.09 -1.04 9.71 -39.70 -0.39 -1.43 16 21 C -0.13 -1.35 10.06 -39.49 -0.40 -1.75 16 22 C -0.10 -1.04 10.03 -39.60 -0.40 -1.43 16 23 C -0.14 -1.50 9.86 -39.40 -0.39 -1.89 16 24 C 0.12 1.47 4.14 -39.21 -0.16 1.31 16 25 O -0.33 -4.02 9.51 -18.87 -0.18 -4.20 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.72 8.12 -51.93 -0.42 0.29 16 28 H 0.07 1.04 5.91 -51.92 -0.31 0.74 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 1.49 6.86 -51.92 -0.36 1.14 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.69 8.10 -51.91 -0.42 1.27 16 35 H 0.09 1.66 7.45 -51.92 -0.39 1.28 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.10 1.16 5.92 -51.93 -0.31 0.85 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.13 1.47 8.00 -52.49 -0.42 1.05 16 40 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -33.50 354.18 -9.05 -42.55 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.97 Total: 1.59 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -1.47 Total: -11.61 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.38 Total: -34.60 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.10 Total: -15.60 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.50 -9.05 -42.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290246607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.001 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds