Wall clock time and date at job start Tue Mar 31 2020 14:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42895 * 109.47136 * 2 1 4 4 C 1.53005 * 109.46658 * 119.99499 * 2 1 3 5 5 N 1.46502 * 109.47078 * 305.00126 * 4 2 1 6 6 C 1.34781 * 119.99905 * 180.02562 * 5 4 2 7 7 O 1.21606 * 119.99855 * 359.97438 * 6 5 4 8 8 C 1.47428 * 119.99850 * 179.97438 * 6 5 4 9 9 C 1.39678 * 120.21400 * 0.02562 * 8 6 5 10 10 C 1.37804 * 119.93306 * 179.97438 * 9 8 6 11 11 C 1.38656 * 120.38754 * 0.02562 * 10 9 8 12 12 C 1.37915 * 120.43686 * 359.97438 * 11 10 9 13 13 C 1.39113 * 120.04584 * 359.97438 * 12 11 10 14 14 S 1.76204 * 120.18761 * 179.97438 * 13 12 11 15 15 C 1.76204 * 99.99719 * 6.86464 * 14 13 12 16 16 H 1.07991 * 120.00493 * 5.66058 * 15 14 13 17 17 C 1.38807 * 119.99763 * 185.65520 * 15 14 13 18 18 N 1.31561 * 120.00281 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00053 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47010 * 60.00402 * 19 17 15 21 21 H 1.48498 * 109.47273 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47303 * 300.00734 * 19 17 15 23 23 C 1.52999 * 109.47424 * 239.99285 * 2 1 3 24 24 C 1.53001 * 117.49501 * 128.75025 * 23 2 1 25 25 C 1.53001 * 117.49486 * 60.09035 * 23 2 1 26 26 H 1.08992 * 109.47349 * 300.00651 * 1 2 3 27 27 H 1.09004 * 109.46580 * 60.00560 * 1 2 3 28 28 H 1.09000 * 109.47125 * 180.02562 * 1 2 3 29 29 H 0.96703 * 113.99768 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46833 * 185.00209 * 4 2 1 31 31 H 1.08997 * 109.46883 * 65.00021 * 4 2 1 32 32 H 0.96997 * 120.00061 * 359.97438 * 5 4 2 33 33 H 1.07997 * 120.03544 * 0.25294 * 9 8 6 34 34 H 1.08007 * 119.80795 * 179.97438 * 10 9 8 35 35 H 1.07996 * 119.78651 * 179.97438 * 11 10 9 36 36 H 1.07995 * 119.97769 * 179.97438 * 12 11 10 37 37 H 0.96998 * 120.00032 * 179.97438 * 18 17 15 38 38 H 1.08994 * 115.55173 * 274.42100 * 23 2 1 39 39 H 1.08996 * 117.50131 * 0.02562 * 24 23 2 40 40 H 1.09001 * 117.49424 * 145.02138 * 24 23 2 41 41 H 1.09001 * 117.49743 * 214.97644 * 25 23 2 42 42 H 1.08998 * 117.50010 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.4557 -0.1035 2.4424 6 6 1.7645 -0.5765 3.6661 7 8 2.5277 -1.5164 3.7798 8 6 1.1770 0.0455 4.8667 9 6 0.2994 1.1249 4.7412 10 6 -0.2468 1.7016 5.8673 11 6 0.0698 1.2170 7.1273 12 6 0.9345 0.1520 7.2694 13 6 1.4955 -0.4445 6.1448 14 16 2.6012 -1.8049 6.3220 15 6 2.4581 -2.0917 8.0546 16 1 1.7384 -1.5353 8.6365 17 6 3.2705 -3.0330 8.6716 18 7 4.1476 -3.7107 7.9629 19 14 3.1194 -3.3366 10.5086 20 1 1.7411 -3.7908 10.8235 21 1 4.0914 -4.3815 10.9192 22 1 3.4060 -2.0784 11.2435 23 6 2.0401 -0.7214 -1.2491 24 6 3.0765 0.0038 -2.1099 25 6 1.6376 -0.1485 -2.6095 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 2.9704 1.4235 0.0004 30 1 3.1262 -0.6442 1.2953 31 1 1.7515 -1.7714 1.2058 32 1 0.8472 0.6465 2.3517 33 1 0.0457 1.5043 3.7624 34 1 -0.9248 2.5364 5.7679 35 1 -0.3636 1.6766 8.0033 36 1 1.1762 -0.2191 8.2543 37 1 4.7156 -4.3682 8.3942 38 1 2.1254 -1.8047 -1.1645 39 1 3.3952 0.9945 -1.7861 40 1 3.8434 -0.6026 -2.5919 41 1 1.4584 -0.8550 -3.4200 42 1 1.0097 0.7425 -2.6146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312594215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:25 Heat of formation + Delta-G solvation = -33.914188 kcal Electronic energy + Delta-G solvation = -24244.757950 eV Core-core repulsion = 20702.831325 eV Total energy + Delta-G solvation = -3541.926625 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.119 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03553 -39.01731 -37.38086 -35.51939 -34.15851 -32.74293 -31.45125 -30.26472 -30.20180 -26.91508 -25.81395 -23.87933 -22.58712 -22.39294 -21.80913 -20.37851 -19.87411 -18.33759 -17.36645 -17.15589 -16.14612 -15.77973 -15.43305 -15.23751 -14.97030 -14.51571 -14.22588 -14.06504 -13.77799 -13.68204 -13.06643 -12.95465 -12.72783 -12.65246 -12.57509 -12.18472 -11.76908 -11.65799 -11.56227 -11.27713 -11.17876 -11.17119 -10.94463 -10.81114 -10.40483 -10.32927 -10.13079 -9.80385 -9.61795 -9.47880 -8.76707 -8.70979 -8.31237 -8.05655 -6.52213 -6.45083 -4.15622 1.55207 2.03749 3.11336 3.14517 3.18596 3.35552 3.43806 3.51766 3.55090 4.01183 4.07920 4.34403 4.49584 4.50797 4.60075 4.80041 4.95727 4.98293 5.06607 5.14530 5.32217 5.36166 5.41264 5.50939 5.54765 5.61497 5.61985 5.76925 5.78466 5.84036 5.88814 5.98117 6.03100 6.13554 6.40514 6.61241 6.75764 6.87374 7.04572 7.14865 7.38768 7.45707 7.60657 7.93512 8.16856 8.81232 9.00950 10.58149 Molecular weight = 321.12amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.003151 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.485175 B = 8882.796712 C =10119.275097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.151 3.849 3 O -0.555 6.555 4 C 0.103 3.897 5 N -0.732 5.732 6 C 0.551 3.449 7 O -0.511 6.511 8 C -0.177 4.177 9 C -0.060 4.060 10 C -0.187 4.187 11 C -0.077 4.077 12 C -0.154 4.154 13 C -0.056 4.056 14 S 0.184 5.816 15 C -0.596 4.596 16 H 0.090 0.910 17 C 0.084 3.916 18 N -0.859 5.859 19 Si 0.919 3.081 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.270 1.270 23 C -0.183 4.183 24 C -0.177 4.177 25 C -0.167 4.167 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.378 0.622 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.398 0.602 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.275 0.725 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 8.967 -16.313 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.110 3.890 3 O -0.362 6.362 4 C -0.022 4.022 5 N -0.388 5.388 6 C 0.340 3.660 7 O -0.388 6.388 8 C -0.192 4.192 9 C -0.080 4.080 10 C -0.211 4.211 11 C -0.099 4.099 12 C -0.179 4.179 13 C -0.176 4.176 14 S 0.448 5.552 15 C -0.743 4.743 16 H 0.108 0.892 17 C -0.127 4.127 18 N -0.491 5.491 19 Si 0.744 3.256 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.195 1.195 23 C -0.202 4.202 24 C -0.214 4.214 25 C -0.204 4.204 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.227 0.773 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.234 0.766 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.261 7.317 -16.935 19.184 hybrid contribution -0.535 0.726 1.997 2.192 sum -5.797 8.043 -14.938 17.929 Atomic orbital electron populations 1.21722 0.91906 1.02886 1.02803 1.20898 0.95098 0.81759 0.91237 1.86541 1.27120 1.25759 1.96791 1.21835 0.98613 0.97669 0.84035 1.45778 1.50731 1.37246 1.05042 1.18329 0.81471 0.83282 0.82873 1.90781 1.35078 1.27549 1.85436 1.19103 1.06340 1.02120 0.91661 1.20901 0.95101 0.94303 0.97740 1.20636 1.04937 1.02944 0.92613 1.21086 0.96352 0.95632 0.96818 1.21434 0.99738 0.97633 0.99076 1.23085 1.00005 1.00658 0.93871 1.84750 1.41047 1.23436 1.05960 1.24022 1.25654 1.27348 0.97260 0.89208 1.25094 0.93541 0.94284 0.99808 1.69969 1.19917 1.22409 1.36829 0.86207 0.78548 0.78441 0.82412 1.19479 1.20562 1.19495 1.22976 1.05056 1.00056 0.92080 1.22991 0.92658 1.02193 1.03571 1.22897 0.98061 1.03148 0.96260 0.91722 0.91612 0.90703 0.77329 0.91331 0.90761 0.76579 0.87204 0.87070 0.87018 0.84388 0.91492 0.86866 0.88222 0.88712 0.88899 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.46 37.16 0.31 -0.89 16 2 C 0.15 1.41 0.88 -90.62 -0.08 1.33 16 3 O -0.55 -5.27 12.08 -35.23 -0.43 -5.69 16 4 C 0.10 1.27 4.80 -4.04 -0.02 1.25 16 5 N -0.73 -10.54 5.14 -61.38 -0.32 -10.86 16 6 C 0.55 10.77 7.75 -12.52 -0.10 10.67 16 7 O -0.51 -11.99 13.77 5.27 0.07 -11.91 16 8 C -0.18 -3.55 5.89 -104.75 -0.62 -4.16 16 9 C -0.06 -0.98 9.53 -39.20 -0.37 -1.35 16 10 C -0.19 -2.92 10.02 -39.59 -0.40 -3.32 16 11 C -0.08 -1.32 10.03 -39.55 -0.40 -1.72 16 12 C -0.15 -3.24 9.22 -39.38 -0.36 -3.60 16 13 C -0.06 -1.30 6.14 -38.39 -0.24 -1.53 16 14 S 0.18 4.96 18.56 -107.50 -2.00 2.96 16 15 C -0.60 -16.52 9.00 30.94 0.28 -16.24 16 16 H 0.09 2.35 4.98 -52.49 -0.26 2.09 16 17 C 0.08 2.30 5.49 -17.46 -0.10 2.21 16 18 N -0.86 -24.83 13.22 55.49 0.73 -24.10 16 19 Si 0.92 20.73 29.55 -169.99 -5.02 15.71 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 C -0.18 -1.49 5.15 -90.62 -0.47 -1.95 16 24 C -0.18 -1.28 9.74 -26.69 -0.26 -1.54 16 25 C -0.17 -1.21 9.68 -26.69 -0.26 -1.47 16 26 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 27 H 0.06 0.53 7.29 -51.93 -0.38 0.16 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.38 2.79 7.56 45.56 0.34 3.14 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.40 4.91 5.02 -40.82 -0.20 4.71 16 33 H 0.11 1.39 6.40 -52.49 -0.34 1.05 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.14 3.02 5.03 -52.49 -0.26 2.76 16 37 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.11 0.92 8.11 -51.93 -0.42 0.50 16 39 H 0.10 0.67 6.37 -51.93 -0.33 0.34 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.10 0.74 7.61 -51.93 -0.40 0.35 16 LS Contribution 355.52 15.07 5.36 5.36 Total: -1.00 -32.31 355.52 -9.35 -41.66 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.68 Total: 9.20 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: -3.07 Total: -22.32 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.42 Total: -34.96 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.35 Total: -17.61 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.00 Total: 2.96 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.31 -9.35 -41.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312594215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.744 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds